Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2017

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Benzalkonium Chloride 6.25 ug/ml
2,339,883	+				+2.3
2,339,979	+				+1.4
2,339,981	+				+2.9
2,339,995	+				-2.4
2,339,995	+				+1.4
2,339,995	+				+2.2
2,339,996	-				+1.0
2,339,996	-				+2.4
2,340,018	+				+3.3
2,340,018	+				-0.1
2,340,018	+				+0.1
2,340,019	-				-3.0
2,340,019	-				+3.4
2,340,019	-				+1.4
2,340,258	+				-1.7
2,340,258	+				+2.4
2,340,258	+				+1.9
2,340,258	+				+1.9
2,340,292	+				+3.3
2,340,311	+				+1.0
2,340,311	+				-3.0
2,340,312	-				+1.2
2,340,312	-				+4.8
2,340,333	-				+4.0
2,340,333	-				+3.7
2,340,354	+				+4.0
2,340,355	-				-1.1
2,340,563	-				+3.0
2,340,563	-				-2.5
2,340,564	+				-2.3
2,340,564	+				-0.5
2,340,564	+				+1.9
2,340,564	+				+3.6
2,340,564	+				+3.6
2,340,565	-				-1.1
2,340,565	-				+1.9
2,340,565	-				-4.3
2,340,565	-				+0.9
2,340,565	-				+4.3
2,340,590	+				+1.1
2,340,590	+				-4.2
2,340,591	-				-2.9
2,340,591	-				+1.9
2,340,591	-				-1.1
2,340,591	-				-0.9
2,340,672	+				-1.9
2,340,672	+				-4.2
2,341,198	-		Psyr_2017	0.32	+1.4
2,341,359	+		Psyr_2017	0.40	-0.5
2,341,360	-		Psyr_2017	0.40	+0.9
2,341,431	+		Psyr_2017	0.44	+2.2
2,341,432	-		Psyr_2017	0.44	-2.5
2,341,432	-		Psyr_2017	0.44	-3.3
2,341,432	-		Psyr_2017	0.44	+2.7
2,341,446	+		Psyr_2017	0.45	-1.9
2,341,446	+		Psyr_2017	0.45	+3.0
2,341,446	+		Psyr_2017	0.45	-1.0
2,341,447	-		Psyr_2017	0.45	+3.2
2,341,447	-		Psyr_2017	0.45	-1.3
2,341,447	-		Psyr_2017	0.45	+0.9
2,341,476	+		Psyr_2017	0.47	-1.1
2,341,477	-		Psyr_2017	0.47	-0.1
2,341,509	+		Psyr_2017	0.48	-0.3
2,341,510	-		Psyr_2017	0.48	+3.4
2,341,560	+		Psyr_2017	0.51	+0.8
2,341,560	+		Psyr_2017	0.51	+2.2
2,341,560	+		Psyr_2017	0.51	-2.5
2,341,560	+		Psyr_2017	0.51	-2.5
2,341,560	+		Psyr_2017	0.51	-0.1
2,341,561	-		Psyr_2017	0.51	-1.1
2,341,561	-		Psyr_2017	0.51	-3.8
2,341,561	-		Psyr_2017	0.51	-1.7
2,341,561	-		Psyr_2017	0.51	-0.7
2,341,722	+		Psyr_2017	0.59	+2.2
2,341,723	-		Psyr_2017	0.59	-2.4
2,341,723	-		Psyr_2017	0.59	+0.5
2,341,723	-		Psyr_2017	0.59	-1.4
2,341,903	-		Psyr_2017	0.69	+0.3
2,341,905	+		Psyr_2017	0.69	-2.4
2,341,906	-		Psyr_2017	0.69	-4.8
2,341,924	-		Psyr_2017	0.70	-0.8
2,342,023	-		Psyr_2017	0.75	+1.9
2,342,312	+				+3.0
2,342,313	-				-0.1
2,342,313	-				-0.1
2,342,454	+				-1.1
2,342,483	-				-0.1
2,342,483	-				-0.9
2,342,643	+				-1.1
2,342,644	-				+2.2
2,342,644	-				-0.1
2,342,644	-				-3.2
2,342,660	-				+0.1
2,342,661	+				+1.4
2,342,662	-		Psyr_2018	0.10	+1.4
2,342,662	-		Psyr_2018	0.10	-0.4
2,342,662	-		Psyr_2018	0.10	+0.9
2,342,794	-		Psyr_2018	0.28	-0.7
2,342,816	+		Psyr_2018	0.31	-0.5
2,342,935	+		Psyr_2018	0.47	+4.3
2,342,935	+		Psyr_2018	0.47	+0.3
2,342,935	+		Psyr_2018	0.47	+3.6
2,342,936	-		Psyr_2018	0.48	-2.9
2,342,936	-		Psyr_2018	0.48	-0.1
2,343,181	+		Psyr_2018	0.81	-0.3
2,343,181	+		Psyr_2018	0.81	+1.9
2,343,181	+		Psyr_2018	0.81	-0.1
2,343,181	+		Psyr_2018	0.81	-1.7
2,343,181	+		Psyr_2018	0.81	-1.2
2,343,182	-		Psyr_2018	0.81	-2.9
2,343,182	-		Psyr_2018	0.81	-1.1
2,343,182	-		Psyr_2018	0.81	-1.9
2,343,182	-		Psyr_2018	0.81	-1.0
2,343,182	-		Psyr_2018	0.81	-0.1
2,343,183	+		Psyr_2018	0.81	+1.4
2,343,183	+		Psyr_2018	0.81	+0.3
2,343,184	-		Psyr_2018	0.82	+3.3
2,343,184	-		Psyr_2018	0.82	-2.1
2,343,184	-		Psyr_2018	0.82	-0.1
2,343,189	+		Psyr_2018	0.82	+3.8
2,343,190	-		Psyr_2018	0.82	-3.5
2,343,249	+				+3.0
2,343,249	+				+0.4
2,343,249	+				+1.4
2,343,249	+				+2.4
2,343,249	+				+3.8
2,343,249	+				+2.7
2,343,249	+				+4.3
2,343,249	+				-1.4
2,343,249	+				-1.5
2,343,250	-				+2.9
2,343,250	-				-1.0
2,343,250	-				+2.4
2,343,250	-				-0.3