Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1971 and Psyr_1972 are separated by 52 nucleotides Psyr_1972 and Psyr_1973 are separated by 271 nucleotides
Psyr_1971: Psyr_1971 - Peptidase S45, penicillin amidase, at 2,285,834 to 2,288,173
_1971
Psyr_1972: Psyr_1972 - conserved hypothetical protein, at 2,288,226 to 2,288,537
_1972
Psyr_1973: Psyr_1973 - Aspartate transaminase, at 2,288,809 to 2,290,005
_1973
Position (kb)
2288
2289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2287.250 kb on + strand, within Psyr_1971 at 2287.250 kb on + strand, within Psyr_1971 at 2287.487 kb on + strand, within Psyr_1971 at 2287.632 kb on - strand, within Psyr_1971 at 2287.819 kb on + strand, within Psyr_1971 at 2287.898 kb on + strand, within Psyr_1971 at 2287.898 kb on + strand, within Psyr_1971 at 2287.898 kb on + strand, within Psyr_1971 at 2288.136 kb on - strand at 2288.283 kb on + strand, within Psyr_1972 at 2288.284 kb on - strand, within Psyr_1972 at 2288.284 kb on - strand, within Psyr_1972 at 2288.284 kb on - strand, within Psyr_1972 at 2288.323 kb on + strand, within Psyr_1972 at 2288.324 kb on - strand, within Psyr_1972 at 2288.532 kb on - strand at 2288.541 kb on + strand at 2288.542 kb on - strand at 2288.542 kb on - strand at 2288.542 kb on - strand at 2288.542 kb on - strand at 2288.657 kb on - strand at 2288.664 kb on - strand at 2288.664 kb on - strand at 2288.664 kb on - strand at 2288.671 kb on - strand at 2288.671 kb on - strand at 2288.671 kb on - strand at 2288.677 kb on + strand at 2288.677 kb on + strand at 2288.677 kb on + strand at 2288.678 kb on - strand at 2288.678 kb on - strand at 2288.684 kb on + strand at 2288.684 kb on + strand at 2288.691 kb on + strand at 2288.691 kb on + strand at 2288.692 kb on - strand at 2288.692 kb on - strand at 2288.705 kb on + strand at 2288.705 kb on + strand at 2288.705 kb on + strand at 2288.705 kb on + strand at 2288.839 kb on + strand at 2288.839 kb on + strand at 2288.840 kb on - strand at 2288.840 kb on - strand at 2288.840 kb on - strand at 2288.840 kb on - strand at 2288.840 kb on - strand at 2288.878 kb on - strand at 2288.897 kb on + strand at 2288.897 kb on + strand at 2288.898 kb on - strand at 2289.152 kb on + strand, within Psyr_1973 at 2289.152 kb on + strand, within Psyr_1973 at 2289.152 kb on + strand, within Psyr_1973 at 2289.249 kb on - strand, within Psyr_1973
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 2,287,250 + Psyr_1971 0.61 +1.8 2,287,250 + Psyr_1971 0.61 +4.6 2,287,487 + Psyr_1971 0.71 +3.5 2,287,632 - Psyr_1971 0.77 -1.0 2,287,819 + Psyr_1971 0.85 +0.8 2,287,898 + Psyr_1971 0.88 +0.5 2,287,898 + Psyr_1971 0.88 -1.5 2,287,898 + Psyr_1971 0.88 +0.3 2,288,136 - -1.6 2,288,283 + Psyr_1972 0.18 +4.5 2,288,284 - Psyr_1972 0.19 +0.7 2,288,284 - Psyr_1972 0.19 +3.4 2,288,284 - Psyr_1972 0.19 -1.3 2,288,323 + Psyr_1972 0.31 -0.6 2,288,324 - Psyr_1972 0.31 +0.8 2,288,532 - -2.1 2,288,541 + -0.3 2,288,542 - +0.8 2,288,542 - -3.6 2,288,542 - -1.5 2,288,542 - +3.7 2,288,657 - +0.8 2,288,664 - +0.8 2,288,664 - -3.7 2,288,664 - -3.2 2,288,671 - +2.4 2,288,671 - -2.6 2,288,671 - -0.2 2,288,677 + -3.6 2,288,677 + +5.2 2,288,677 + +2.4 2,288,678 - +2.8 2,288,678 - -3.7 2,288,684 + -2.2 2,288,684 + -0.4 2,288,691 + +2.2 2,288,691 + +3.8 2,288,692 - +1.4 2,288,692 - +1.4 2,288,705 + -1.5 2,288,705 + +3.2 2,288,705 + +2.4 2,288,705 + -0.9 2,288,839 + -1.0 2,288,839 + +1.8 2,288,840 - +0.8 2,288,840 - +2.2 2,288,840 - +3.5 2,288,840 - +2.2 2,288,840 - -0.4 2,288,878 - +3.4 2,288,897 + -0.0 2,288,897 + -2.5 2,288,898 - -2.0 2,289,152 + Psyr_1973 0.29 +3.4 2,289,152 + Psyr_1973 0.29 -1.2 2,289,152 + Psyr_1973 0.29 +2.4 2,289,249 - Psyr_1973 0.37 +4.6
Or see this region's nucleotide sequence