Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1696

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1694 and Psyr_1695 are separated by 84 nucleotidesPsyr_1695 and Psyr_1696 are separated by 13 nucleotidesPsyr_1696 and Psyr_1697 are separated by 27 nucleotidesPsyr_1697 and Psyr_1698 are separated by 11 nucleotides Psyr_1694: Psyr_1694 - Rhomboid-like protein, at 1,902,263 to 1,902,817 _1694 Psyr_1695: Psyr_1695 - conserved hypothetical protein, at 1,902,902 to 1,903,567 _1695 Psyr_1696: Psyr_1696 - Protein of unknown function DUF350, at 1,903,581 to 1,904,006 _1696 Psyr_1697: Psyr_1697 - conserved hypothetical protein, at 1,904,034 to 1,904,780 _1697 Psyr_1698: Psyr_1698 - Glutathionylspermidine synthase, at 1,904,792 to 1,905,949 _1698 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1902.617 kb on + strand, within Psyr_1694at 1902.638 kb on + strand, within Psyr_1694at 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.867 kb on - strandat 1902.867 kb on - strandat 1902.867 kb on - strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.871 kb on - strandat 1902.871 kb on - strandat 1902.871 kb on - strandat 1902.871 kb on - strandat 1903.140 kb on - strand, within Psyr_1695at 1903.157 kb on + strand, within Psyr_1695at 1903.157 kb on + strand, within Psyr_1695at 1903.157 kb on + strand, within Psyr_1695at 1903.158 kb on - strand, within Psyr_1695at 1903.201 kb on - strand, within Psyr_1695at 1903.224 kb on - strand, within Psyr_1695at 1903.305 kb on - strand, within Psyr_1695at 1903.406 kb on + strand, within Psyr_1695at 1903.407 kb on - strand, within Psyr_1695at 1903.434 kb on - strand, within Psyr_1695at 1903.598 kb on + strandat 1903.598 kb on + strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.684 kb on - strand, within Psyr_1696at 1903.684 kb on - strand, within Psyr_1696at 1903.790 kb on + strand, within Psyr_1696at 1903.790 kb on + strand, within Psyr_1696at 1903.796 kb on + strand, within Psyr_1696at 1903.803 kb on + strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.942 kb on - strand, within Psyr_1696at 1903.942 kb on - strand, within Psyr_1696at 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.200 kb on - strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.318 kb on + strand, within Psyr_1697at 1904.490 kb on + strand, within Psyr_1697at 1904.490 kb on + strand, within Psyr_1697at 1904.490 kb on + strand, within Psyr_1697at 1904.493 kb on + strand, within Psyr_1697at 1904.494 kb on - strand, within Psyr_1697at 1904.494 kb on - strand, within Psyr_1697at 1904.508 kb on + strand, within Psyr_1697at 1904.535 kb on + strand, within Psyr_1697at 1904.538 kb on + strand, within Psyr_1697at 1904.538 kb on + strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.622 kb on + strand, within Psyr_1697at 1904.622 kb on + strand, within Psyr_1697at 1904.903 kb on + strandat 1904.903 kb on + strandat 1904.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,902,617 + Psyr_1694 0.64 -1.1
1,902,638 + Psyr_1694 0.68 +3.1
1,902,866 + +1.6
1,902,866 + -1.6
1,902,866 + +1.9
1,902,866 + -3.1
1,902,866 + +2.2
1,902,866 + -0.3
1,902,867 - +3.9
1,902,867 - +2.5
1,902,867 - +0.9
1,902,868 + -1.2
1,902,868 + +0.9
1,902,868 + +1.5
1,902,868 + +2.2
1,902,868 + -1.6
1,902,868 + -1.2
1,902,868 + +0.4
1,902,868 + +0.9
1,902,868 + +3.7
1,902,868 + -0.5
1,902,868 + +0.2
1,902,868 + -0.7
1,902,868 + -0.9
1,902,868 + +2.7
1,902,869 - -3.2
1,902,869 - -0.9
1,902,869 - -0.7
1,902,869 - +0.9
1,902,869 - -5.7
1,902,869 - -0.1
1,902,869 - +0.9
1,902,869 - +1.5
1,902,869 - -0.1
1,902,869 - +0.9
1,902,869 - +3.1
1,902,869 - -2.2
1,902,869 - +0.9
1,902,869 - -0.1
1,902,869 - +0.9
1,902,869 - +2.5
1,902,869 - -2.0
1,902,869 - -3.2
1,902,869 - -0.5
1,902,871 - -1.7
1,902,871 - +2.9
1,902,871 - +0.9
1,902,871 - -0.5
1,903,140 - Psyr_1695 0.36 +3.5
1,903,157 + Psyr_1695 0.38 +2.2
1,903,157 + Psyr_1695 0.38 +2.9
1,903,157 + Psyr_1695 0.38 -4.4
1,903,158 - Psyr_1695 0.38 -0.8
1,903,201 - Psyr_1695 0.45 +1.5
1,903,224 - Psyr_1695 0.48 +4.6
1,903,305 - Psyr_1695 0.61 -1.6
1,903,406 + Psyr_1695 0.76 -2.4
1,903,407 - Psyr_1695 0.76 -0.9
1,903,434 - Psyr_1695 0.80 -0.9
1,903,598 + -1.6
1,903,598 + +3.1
1,903,599 - +1.5
1,903,599 - -1.2
1,903,599 - +2.9
1,903,599 - -1.5
1,903,599 - -2.5
1,903,599 - +2.2
1,903,638 + Psyr_1696 0.13 +2.7
1,903,638 + Psyr_1696 0.13 +1.9
1,903,638 + Psyr_1696 0.13 -3.4
1,903,638 + Psyr_1696 0.13 +2.5
1,903,638 + Psyr_1696 0.13 +2.7
1,903,638 + Psyr_1696 0.13 -2.2
1,903,638 + Psyr_1696 0.13 +0.4
1,903,638 + Psyr_1696 0.13 +1.5
1,903,638 + Psyr_1696 0.13 +2.5
1,903,638 + Psyr_1696 0.13 -0.1
1,903,638 + Psyr_1696 0.13 +1.9
1,903,638 + Psyr_1696 0.13 +3.2
1,903,638 + Psyr_1696 0.13 +3.1
1,903,638 + Psyr_1696 0.13 +3.1
1,903,638 + Psyr_1696 0.13 -1.8
1,903,638 + Psyr_1696 0.13 -0.9
1,903,638 + Psyr_1696 0.13 +1.9
1,903,638 + Psyr_1696 0.13 +0.9
1,903,639 - Psyr_1696 0.14 -0.1
1,903,639 - Psyr_1696 0.14 +1.9
1,903,639 - Psyr_1696 0.14 +4.3
1,903,639 - Psyr_1696 0.14 +2.7
1,903,639 - Psyr_1696 0.14 +3.6
1,903,639 - Psyr_1696 0.14 -0.7
1,903,639 - Psyr_1696 0.14 +3.6
1,903,639 - Psyr_1696 0.14 -1.8
1,903,639 - Psyr_1696 0.14 +4.0
1,903,639 - Psyr_1696 0.14 -0.1
1,903,639 - Psyr_1696 0.14 +3.5
1,903,639 - Psyr_1696 0.14 -1.6
1,903,639 - Psyr_1696 0.14 -0.7
1,903,639 - Psyr_1696 0.14 -0.4
1,903,639 - Psyr_1696 0.14 +1.5
1,903,684 - Psyr_1696 0.24 +2.9
1,903,684 - Psyr_1696 0.24 -0.6
1,903,790 + Psyr_1696 0.49 -0.2
1,903,790 + Psyr_1696 0.49 +3.7
1,903,796 + Psyr_1696 0.50 +0.9
1,903,803 + Psyr_1696 0.52 +1.0
1,903,804 - Psyr_1696 0.52 -1.1
1,903,804 - Psyr_1696 0.52 +0.5
1,903,804 - Psyr_1696 0.52 +0.9
1,903,804 - Psyr_1696 0.52 -0.5
1,903,804 - Psyr_1696 0.52 +3.2
1,903,942 - Psyr_1696 0.85 +0.1
1,903,942 - Psyr_1696 0.85 +0.2
1,904,042 + +4.2
1,904,042 + -1.4
1,904,042 + -3.6
1,904,043 - +2.5
1,904,043 - +2.7
1,904,043 - -1.7
1,904,183 + Psyr_1697 0.20 -0.5
1,904,183 + Psyr_1697 0.20 +1.1
1,904,183 + Psyr_1697 0.20 -2.1
1,904,199 + Psyr_1697 0.22 +1.9
1,904,199 + Psyr_1697 0.22 -0.7
1,904,199 + Psyr_1697 0.22 -0.4
1,904,199 + Psyr_1697 0.22 -0.4
1,904,199 + Psyr_1697 0.22 -1.6
1,904,199 + Psyr_1697 0.22 +4.0
1,904,200 - Psyr_1697 0.22 +0.3
1,904,241 + Psyr_1697 0.28 +3.2
1,904,241 + Psyr_1697 0.28 +0.8
1,904,241 + Psyr_1697 0.28 +3.2
1,904,241 + Psyr_1697 0.28 -0.4
1,904,241 + Psyr_1697 0.28 -1.6
1,904,241 + Psyr_1697 0.28 -0.6
1,904,241 + Psyr_1697 0.28 -3.4
1,904,241 + Psyr_1697 0.28 -0.6
1,904,241 + Psyr_1697 0.28 +3.8
1,904,242 - Psyr_1697 0.28 +3.7
1,904,310 + Psyr_1697 0.37 +3.6
1,904,310 + Psyr_1697 0.37 -0.6
1,904,310 + Psyr_1697 0.37 -0.8
1,904,310 + Psyr_1697 0.37 -1.4
1,904,310 + Psyr_1697 0.37 +3.0
1,904,310 + Psyr_1697 0.37 -2.5
1,904,310 + Psyr_1697 0.37 +3.6
1,904,310 + Psyr_1697 0.37 -0.1
1,904,311 - Psyr_1697 0.37 -1.6
1,904,311 - Psyr_1697 0.37 -0.9
1,904,311 - Psyr_1697 0.37 -1.5
1,904,311 - Psyr_1697 0.37 +0.9
1,904,318 + Psyr_1697 0.38 +3.2
1,904,490 + Psyr_1697 0.61 -2.1
1,904,490 + Psyr_1697 0.61 -3.4
1,904,490 + Psyr_1697 0.61 -2.3
1,904,493 + Psyr_1697 0.61 +2.7
1,904,494 - Psyr_1697 0.62 -3.2
1,904,494 - Psyr_1697 0.62 +3.8
1,904,508 + Psyr_1697 0.63 -3.3
1,904,535 + Psyr_1697 0.67 -0.9
1,904,538 + Psyr_1697 0.67 -0.8
1,904,538 + Psyr_1697 0.67 +0.7
1,904,539 - Psyr_1697 0.68 +2.2
1,904,539 - Psyr_1697 0.68 -1.1
1,904,622 + Psyr_1697 0.79 +0.0
1,904,622 + Psyr_1697 0.79 -2.0
1,904,903 + +1.5
1,904,903 + -0.1
1,904,904 - -0.3

Or see this region's nucleotide sequence