Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1682 and Psyr_1683 overlap by 35 nucleotides Psyr_1683 and Psyr_1684 are separated by 371 nucleotides
Psyr_1682: Psyr_1682 - arsenite efflux membrane protein ArsB, at 1,890,072 to 1,891,352
_1682
Psyr_1683: Psyr_1683 - conserved hypothetical protein, at 1,891,318 to 1,892,301
_1683
Psyr_1684: Psyr_1684 - GGDEF domain protein, at 1,892,673 to 1,893,737
_1684
Position (kb) 1891
1892
1893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1890.570 kb on + strand, within Psyr_1682 at 1890.570 kb on + strand, within Psyr_1682 at 1890.571 kb on - strand, within Psyr_1682 at 1890.660 kb on + strand, within Psyr_1682 at 1890.660 kb on + strand, within Psyr_1682 at 1890.661 kb on - strand, within Psyr_1682 at 1890.872 kb on + strand, within Psyr_1682 at 1890.873 kb on - strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.939 kb on + strand, within Psyr_1682 at 1890.940 kb on - strand, within Psyr_1682 at 1890.940 kb on - strand, within Psyr_1682 at 1890.940 kb on - strand, within Psyr_1682 at 1890.940 kb on - strand, within Psyr_1682 at 1890.940 kb on - strand at 1891.158 kb on + strand, within Psyr_1682 at 1891.159 kb on - strand, within Psyr_1682 at 1891.159 kb on - strand, within Psyr_1682 at 1891.159 kb on - strand, within Psyr_1682 at 1891.159 kb on - strand, within Psyr_1682 at 1891.159 kb on - strand, within Psyr_1682 at 1891.259 kb on + strand at 1891.260 kb on - strand at 1891.260 kb on - strand at 1891.273 kb on - strand at 1891.273 kb on - strand at 1891.273 kb on - strand at 1891.275 kb on + strand at 1891.275 kb on + strand at 1891.276 kb on - strand at 1891.276 kb on - strand at 1891.456 kb on + strand, within Psyr_1683 at 1891.528 kb on - strand, within Psyr_1683 at 1891.528 kb on - strand, within Psyr_1683 at 1891.529 kb on + strand, within Psyr_1683 at 1891.529 kb on + strand, within Psyr_1683 at 1891.529 kb on + strand, within Psyr_1683 at 1891.529 kb on + strand, within Psyr_1683 at 1891.529 kb on + strand, within Psyr_1683 at 1891.529 kb on + strand, within Psyr_1683 at 1891.530 kb on - strand, within Psyr_1683 at 1891.530 kb on - strand, within Psyr_1683 at 1891.530 kb on - strand, within Psyr_1683 at 1891.530 kb on - strand, within Psyr_1683 at 1891.530 kb on - strand, within Psyr_1683 at 1891.530 kb on - strand, within Psyr_1683 at 1891.530 kb on - strand, within Psyr_1683 at 1891.621 kb on + strand, within Psyr_1683 at 1891.621 kb on + strand, within Psyr_1683 at 1891.889 kb on + strand, within Psyr_1683 at 1892.000 kb on - strand, within Psyr_1683 at 1892.293 kb on + strand at 1892.356 kb on + strand at 1892.356 kb on + strand at 1892.356 kb on + strand at 1892.356 kb on + strand at 1892.357 kb on - strand at 1892.357 kb on - strand at 1892.357 kb on - strand at 1892.398 kb on + strand at 1892.399 kb on - strand at 1892.429 kb on - strand at 1892.448 kb on - strand at 1892.490 kb on + strand at 1892.491 kb on - strand at 1892.491 kb on - strand at 1892.492 kb on + strand at 1892.492 kb on + strand at 1892.493 kb on - strand at 1892.493 kb on - strand at 1892.493 kb on - strand at 1892.493 kb on - strand at 1892.493 kb on - strand at 1892.493 kb on - strand at 1892.493 kb on - strand at 1892.611 kb on + strand at 1892.611 kb on + strand at 1892.611 kb on + strand at 1892.611 kb on + strand at 1892.611 kb on + strand at 1892.611 kb on + strand at 1892.611 kb on + strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.612 kb on - strand at 1892.613 kb on + strand at 1892.613 kb on + strand at 1892.613 kb on + strand at 1892.614 kb on - strand at 1892.614 kb on - strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.615 kb on + strand at 1892.616 kb on - strand at 1892.616 kb on - strand at 1892.616 kb on - strand at 1892.616 kb on - strand at 1892.672 kb on + strand at 1892.738 kb on + strand at 1892.738 kb on + strand at 1892.738 kb on + strand at 1892.738 kb on + strand at 1892.738 kb on + strand at 1892.738 kb on + strand at 1892.738 kb on + strand at 1892.739 kb on - strand at 1892.739 kb on - strand at 1892.879 kb on + strand, within Psyr_1684 at 1892.879 kb on + strand, within Psyr_1684 at 1892.879 kb on + strand, within Psyr_1684 at 1892.879 kb on + strand, within Psyr_1684 at 1892.879 kb on + strand, within Psyr_1684 at 1892.879 kb on + strand, within Psyr_1684 at 1892.880 kb on - strand, within Psyr_1684 at 1892.880 kb on - strand, within Psyr_1684 at 1892.880 kb on - strand, within Psyr_1684 at 1892.880 kb on - strand, within Psyr_1684 at 1892.880 kb on - strand, within Psyr_1684 at 1892.935 kb on + strand, within Psyr_1684 at 1892.935 kb on + strand, within Psyr_1684 at 1892.935 kb on + strand, within Psyr_1684 at 1892.936 kb on - strand, within Psyr_1684 at 1892.936 kb on - strand, within Psyr_1684 at 1892.985 kb on - strand, within Psyr_1684 at 1893.012 kb on + strand, within Psyr_1684 at 1893.012 kb on + strand, within Psyr_1684 at 1893.012 kb on + strand, within Psyr_1684 at 1893.012 kb on + strand, within Psyr_1684 at 1893.013 kb on - strand, within Psyr_1684 at 1893.013 kb on - strand, within Psyr_1684 at 1893.013 kb on - strand, within Psyr_1684 at 1893.013 kb on - strand, within Psyr_1684 at 1893.024 kb on + strand, within Psyr_1684 at 1893.053 kb on + strand, within Psyr_1684 at 1893.053 kb on + strand, within Psyr_1684 at 1893.054 kb on - strand, within Psyr_1684 at 1893.054 kb on - strand, within Psyr_1684 at 1893.054 kb on - strand, within Psyr_1684 at 1893.155 kb on + strand, within Psyr_1684 at 1893.155 kb on + strand, within Psyr_1684 at 1893.155 kb on + strand, within Psyr_1684 at 1893.156 kb on - strand, within Psyr_1684 at 1893.156 kb on - strand, within Psyr_1684 at 1893.156 kb on - strand, within Psyr_1684 at 1893.159 kb on + strand, within Psyr_1684 at 1893.159 kb on + strand, within Psyr_1684 at 1893.159 kb on + strand, within Psyr_1684 at 1893.159 kb on + strand, within Psyr_1684 at 1893.160 kb on - strand, within Psyr_1684 at 1893.160 kb on - strand, within Psyr_1684 at 1893.160 kb on - strand, within Psyr_1684 at 1893.160 kb on - strand, within Psyr_1684 at 1893.160 kb on - strand, within Psyr_1684 at 1893.160 kb on - strand, within Psyr_1684
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,890,570 + Psyr_1682 0.39 -1.2 1,890,570 + Psyr_1682 0.39 +2.5 1,890,571 - Psyr_1682 0.39 -1.9 1,890,660 + Psyr_1682 0.46 -3.0 1,890,660 + Psyr_1682 0.46 +2.2 1,890,661 - Psyr_1682 0.46 +3.2 1,890,872 + Psyr_1682 0.62 +1.5 1,890,873 - Psyr_1682 0.63 +3.4 1,890,939 + Psyr_1682 0.68 +0.3 1,890,939 + Psyr_1682 0.68 -1.3 1,890,939 + Psyr_1682 0.68 +3.2 1,890,939 + Psyr_1682 0.68 -0.7 1,890,939 + Psyr_1682 0.68 -0.9 1,890,939 + Psyr_1682 0.68 -0.1 1,890,939 + Psyr_1682 0.68 -0.8 1,890,939 + Psyr_1682 0.68 -0.8 1,890,939 + Psyr_1682 0.68 -1.2 1,890,940 - Psyr_1682 0.68 -1.0 1,890,940 - Psyr_1682 0.68 -2.5 1,890,940 - Psyr_1682 0.68 -1.9 1,890,940 - Psyr_1682 0.68 +3.5 1,890,940 - +1.9 1,891,158 + Psyr_1682 0.85 -0.6 1,891,159 - Psyr_1682 0.85 -1.7 1,891,159 - Psyr_1682 0.85 +0.0 1,891,159 - Psyr_1682 0.85 -1.1 1,891,159 - Psyr_1682 0.85 +0.9 1,891,159 - Psyr_1682 0.85 +0.9 1,891,259 + -0.9 1,891,260 - +3.2 1,891,260 - +3.9 1,891,273 - -1.5 1,891,273 - +1.9 1,891,273 - -1.1 1,891,275 + +3.5 1,891,275 + +0.9 1,891,276 - +0.8 1,891,276 - +2.2 1,891,456 + Psyr_1683 0.14 -2.8 1,891,528 - Psyr_1683 0.21 +1.5 1,891,528 - Psyr_1683 0.21 +1.5 1,891,529 + Psyr_1683 0.21 +1.5 1,891,529 + Psyr_1683 0.21 -0.8 1,891,529 + Psyr_1683 0.21 -3.4 1,891,529 + Psyr_1683 0.21 -0.1 1,891,529 + Psyr_1683 0.21 +2.7 1,891,529 + Psyr_1683 0.21 -1.5 1,891,530 - Psyr_1683 0.22 -0.1 1,891,530 - Psyr_1683 0.22 +3.5 1,891,530 - Psyr_1683 0.22 -1.4 1,891,530 - Psyr_1683 0.22 -2.4 1,891,530 - Psyr_1683 0.22 +2.7 1,891,530 - Psyr_1683 0.22 -0.3 1,891,530 - Psyr_1683 0.22 -0.9 1,891,621 + Psyr_1683 0.31 -2.1 1,891,621 + Psyr_1683 0.31 -0.8 1,891,889 + Psyr_1683 0.58 +0.2 1,892,000 - Psyr_1683 0.69 +0.1 1,892,293 + +1.7 1,892,356 + -0.6 1,892,356 + -1.9 1,892,356 + +1.5 1,892,356 + +1.9 1,892,357 - +0.9 1,892,357 - +3.6 1,892,357 - +3.9 1,892,398 + +0.4 1,892,399 - -0.9 1,892,429 - -1.1 1,892,448 - -2.6 1,892,490 + +4.9 1,892,491 - -1.3 1,892,491 - +0.5 1,892,492 + -0.5 1,892,492 + +0.4 1,892,493 - -1.6 1,892,493 - +1.9 1,892,493 - +1.5 1,892,493 - -0.9 1,892,493 - +2.9 1,892,493 - -3.2 1,892,493 - +0.9 1,892,611 + -1.1 1,892,611 + -1.9 1,892,611 + +3.8 1,892,611 + -2.3 1,892,611 + -2.6 1,892,611 + +3.2 1,892,611 + -1.2 1,892,612 - -1.1 1,892,612 - +0.9 1,892,612 - -1.0 1,892,612 - -1.1 1,892,612 - -0.1 1,892,612 - +2.7 1,892,612 - +2.9 1,892,612 - +2.2 1,892,612 - -3.6 1,892,612 - +2.7 1,892,613 + +1.5 1,892,613 + +3.1 1,892,613 + +1.5 1,892,614 - +3.7 1,892,614 - -1.0 1,892,615 + -1.9 1,892,615 + -0.9 1,892,615 + +0.4 1,892,615 + -1.0 1,892,615 + +2.7 1,892,615 + +2.7 1,892,615 + -0.8 1,892,615 + +2.2 1,892,615 + -1.0 1,892,615 + -2.8 1,892,615 + -2.3 1,892,616 - -2.2 1,892,616 - +0.2 1,892,616 - -3.2 1,892,616 - -0.1 1,892,672 + +1.9 1,892,738 + +2.2 1,892,738 + -2.0 1,892,738 + +1.9 1,892,738 + +2.5 1,892,738 + +2.9 1,892,738 + +3.8 1,892,738 + -0.0 1,892,739 - +1.6 1,892,739 - -1.3 1,892,879 + Psyr_1684 0.19 +0.1 1,892,879 + Psyr_1684 0.19 +2.7 1,892,879 + Psyr_1684 0.19 -2.2 1,892,879 + Psyr_1684 0.19 +2.7 1,892,879 + Psyr_1684 0.19 -1.1 1,892,879 + Psyr_1684 0.19 +2.9 1,892,880 - Psyr_1684 0.19 +1.5 1,892,880 - Psyr_1684 0.19 +0.9 1,892,880 - Psyr_1684 0.19 -0.9 1,892,880 - Psyr_1684 0.19 -0.1 1,892,880 - Psyr_1684 0.19 +2.2 1,892,935 + Psyr_1684 0.25 -0.1 1,892,935 + Psyr_1684 0.25 -0.8 1,892,935 + Psyr_1684 0.25 +0.9 1,892,936 - Psyr_1684 0.25 +2.9 1,892,936 - Psyr_1684 0.25 +1.7 1,892,985 - Psyr_1684 0.29 -0.3 1,893,012 + Psyr_1684 0.32 +4.1 1,893,012 + Psyr_1684 0.32 +1.9 1,893,012 + Psyr_1684 0.32 +2.9 1,893,012 + Psyr_1684 0.32 +2.9 1,893,013 - Psyr_1684 0.32 -2.0 1,893,013 - Psyr_1684 0.32 +2.7 1,893,013 - Psyr_1684 0.32 +1.5 1,893,013 - Psyr_1684 0.32 -1.6 1,893,024 + Psyr_1684 0.33 -0.4 1,893,053 + Psyr_1684 0.36 +4.0 1,893,053 + Psyr_1684 0.36 -1.4 1,893,054 - Psyr_1684 0.36 -2.8 1,893,054 - Psyr_1684 0.36 -1.9 1,893,054 - Psyr_1684 0.36 -0.9 1,893,155 + Psyr_1684 0.45 +3.6 1,893,155 + Psyr_1684 0.45 -1.1 1,893,155 + Psyr_1684 0.45 -2.2 1,893,156 - Psyr_1684 0.45 +0.9 1,893,156 - Psyr_1684 0.45 -1.5 1,893,156 - Psyr_1684 0.45 -3.6 1,893,159 + Psyr_1684 0.46 -0.3 1,893,159 + Psyr_1684 0.46 -1.6 1,893,159 + Psyr_1684 0.46 -1.1 1,893,159 + Psyr_1684 0.46 -0.1 1,893,160 - Psyr_1684 0.46 +0.8 1,893,160 - Psyr_1684 0.46 +0.9 1,893,160 - Psyr_1684 0.46 -3.6 1,893,160 - Psyr_1684 0.46 -0.1 1,893,160 - Psyr_1684 0.46 -0.3 1,893,160 - Psyr_1684 0.46 +3.1
Or see this region's nucleotide sequence