Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1627

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1626 and Psyr_1627 are separated by 190 nucleotidesPsyr_1627 and Psyr_1628 are separated by 76 nucleotides Psyr_1626: Psyr_1626 - Pirin, N-terminal:Pirin, C-terminal, at 1,828,914 to 1,829,768 _1626 Psyr_1627: Psyr_1627 - conserved hypothetical protein, at 1,829,959 to 1,830,369 _1627 Psyr_1628: Psyr_1628 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, N-terminal, at 1,830,446 to 1,832,893 _1628 Position (kb) 1829 1830 1831Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 1829.067 kb on + strand, within Psyr_1626at 1829.096 kb on + strand, within Psyr_1626at 1829.096 kb on + strand, within Psyr_1626at 1829.149 kb on + strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.196 kb on - strand, within Psyr_1626at 1829.214 kb on - strand, within Psyr_1626at 1829.227 kb on + strand, within Psyr_1626at 1829.227 kb on + strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.253 kb on + strand, within Psyr_1626at 1829.253 kb on + strand, within Psyr_1626at 1829.334 kb on - strand, within Psyr_1626at 1829.334 kb on - strand, within Psyr_1626at 1829.334 kb on - strand, within Psyr_1626at 1829.365 kb on + strand, within Psyr_1626at 1829.365 kb on + strand, within Psyr_1626at 1829.398 kb on - strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.753 kb on + strandat 1829.797 kb on + strandat 1829.812 kb on + strandat 1829.813 kb on - strandat 1829.813 kb on - strandat 1829.823 kb on - strandat 1830.069 kb on - strand, within Psyr_1627at 1830.069 kb on - strand, within Psyr_1627at 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.408 kb on - strandat 1830.783 kb on - strand, within Psyr_1628at 1830.849 kb on - strand, within Psyr_1628at 1830.849 kb on - strand, within Psyr_1628at 1831.017 kb on + strand, within Psyr_1628at 1831.017 kb on + strand, within Psyr_1628at 1831.017 kb on + strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.018 kb on - strand, within Psyr_1628at 1831.149 kb on + strand, within Psyr_1628at 1831.150 kb on - strand, within Psyr_1628at 1831.326 kb on - strand, within Psyr_1628

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,829,067 + Psyr_1626 0.18 -1.3
1,829,096 + Psyr_1626 0.21 -0.4
1,829,096 + Psyr_1626 0.21 +2.9
1,829,149 + Psyr_1626 0.27 +2.9
1,829,150 - Psyr_1626 0.28 +0.2
1,829,150 - Psyr_1626 0.28 +0.7
1,829,150 - Psyr_1626 0.28 -0.9
1,829,155 + Psyr_1626 0.28 +0.7
1,829,155 + Psyr_1626 0.28 -0.0
1,829,156 - Psyr_1626 0.28 -0.1
1,829,156 - Psyr_1626 0.28 -1.7
1,829,156 - Psyr_1626 0.28 +1.9
1,829,156 - Psyr_1626 0.28 -0.7
1,829,156 - Psyr_1626 0.28 +2.3
1,829,156 - Psyr_1626 0.28 -0.9
1,829,196 - Psyr_1626 0.33 -0.3
1,829,214 - Psyr_1626 0.35 -5.5
1,829,227 + Psyr_1626 0.37 -2.1
1,829,227 + Psyr_1626 0.37 -1.1
1,829,228 - Psyr_1626 0.37 +1.9
1,829,228 - Psyr_1626 0.37 -1.0
1,829,228 - Psyr_1626 0.37 -1.5
1,829,228 - Psyr_1626 0.37 -0.8
1,829,228 - Psyr_1626 0.37 +3.3
1,829,228 - Psyr_1626 0.37 -1.7
1,829,253 + Psyr_1626 0.40 -0.7
1,829,253 + Psyr_1626 0.40 +0.0
1,829,334 - Psyr_1626 0.49 +3.4
1,829,334 - Psyr_1626 0.49 -2.6
1,829,334 - Psyr_1626 0.49 -1.8
1,829,365 + Psyr_1626 0.53 -1.9
1,829,365 + Psyr_1626 0.53 +2.3
1,829,398 - Psyr_1626 0.57 -1.2
1,829,560 + Psyr_1626 0.76 +4.0
1,829,560 + Psyr_1626 0.76 +1.9
1,829,560 + Psyr_1626 0.76 +2.3
1,829,560 + Psyr_1626 0.76 +3.9
1,829,560 + Psyr_1626 0.76 +0.1
1,829,560 + Psyr_1626 0.76 +3.7
1,829,561 - Psyr_1626 0.76 +3.6
1,829,561 - Psyr_1626 0.76 +0.6
1,829,561 - Psyr_1626 0.76 -2.9
1,829,561 - Psyr_1626 0.76 -0.5
1,829,561 - Psyr_1626 0.76 -0.5
1,829,561 - Psyr_1626 0.76 +2.5
1,829,561 - Psyr_1626 0.76 -1.0
1,829,611 + Psyr_1626 0.82 -1.5
1,829,611 + Psyr_1626 0.82 +3.4
1,829,611 + Psyr_1626 0.82 +2.7
1,829,611 + Psyr_1626 0.82 +4.9
1,829,611 + Psyr_1626 0.82 -1.6
1,829,611 + Psyr_1626 0.82 -0.3
1,829,612 - Psyr_1626 0.82 +0.9
1,829,612 - Psyr_1626 0.82 +1.9
1,829,612 - Psyr_1626 0.82 +1.9
1,829,753 + -2.1
1,829,797 + +2.3
1,829,812 + +0.2
1,829,813 - -0.7
1,829,813 - -1.6
1,829,823 - +2.5
1,830,069 - Psyr_1627 0.27 +3.5
1,830,069 - Psyr_1627 0.27 -0.4
1,830,405 + -0.1
1,830,405 + +2.7
1,830,405 + -0.9
1,830,407 + -1.8
1,830,407 + -0.1
1,830,407 + -2.1
1,830,408 - -1.9
1,830,783 - Psyr_1628 0.14 -0.5
1,830,849 - Psyr_1628 0.16 -0.5
1,830,849 - Psyr_1628 0.16 -3.2
1,831,017 + Psyr_1628 0.23 +1.2
1,831,017 + Psyr_1628 0.23 +1.3
1,831,017 + Psyr_1628 0.23 +0.2
1,831,018 - Psyr_1628 0.23 -0.6
1,831,018 - Psyr_1628 0.23 -0.0
1,831,018 - Psyr_1628 0.23 +2.3
1,831,018 - Psyr_1628 0.23 +4.3
1,831,018 - Psyr_1628 0.23 +2.5
1,831,018 - Psyr_1628 0.23 +0.2
1,831,018 - Psyr_1628 0.23 +0.4
1,831,018 - Psyr_1628 0.23 +3.3
1,831,149 + Psyr_1628 0.29 -0.7
1,831,150 - Psyr_1628 0.29 +0.9
1,831,326 - Psyr_1628 0.36 -1.4

Or see this region's nucleotide sequence