Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1626

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1625 and Psyr_1626 are separated by 97 nucleotidesPsyr_1626 and Psyr_1627 are separated by 190 nucleotidesPsyr_1627 and Psyr_1628 are separated by 76 nucleotides Psyr_1625: Psyr_1625 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 1,826,147 to 1,828,816 _1625 Psyr_1626: Psyr_1626 - Pirin, N-terminal:Pirin, C-terminal, at 1,828,914 to 1,829,768 _1626 Psyr_1627: Psyr_1627 - conserved hypothetical protein, at 1,829,959 to 1,830,369 _1627 Psyr_1628: Psyr_1628 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, N-terminal, at 1,830,446 to 1,832,893 _1628 Position (kb) 1828 1829 1830Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 1827.932 kb on + strand, within Psyr_1625at 1827.932 kb on + strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.933 kb on - strand, within Psyr_1625at 1827.934 kb on + strand, within Psyr_1625at 1827.934 kb on + strand, within Psyr_1625at 1827.934 kb on + strand, within Psyr_1625at 1827.934 kb on + strand, within Psyr_1625at 1827.935 kb on - strand, within Psyr_1625at 1827.935 kb on - strand, within Psyr_1625at 1827.941 kb on + strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.174 kb on + strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.175 kb on - strand, within Psyr_1625at 1828.196 kb on - strand, within Psyr_1625at 1828.196 kb on - strand, within Psyr_1625at 1828.196 kb on - strand, within Psyr_1625at 1828.196 kb on - strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.199 kb on + strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.200 kb on - strand, within Psyr_1625at 1828.202 kb on + strand, within Psyr_1625at 1828.203 kb on - strand, within Psyr_1625at 1828.203 kb on - strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.205 kb on + strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.206 kb on - strand, within Psyr_1625at 1828.229 kb on + strand, within Psyr_1625at 1828.230 kb on - strand, within Psyr_1625at 1828.284 kb on - strand, within Psyr_1625at 1828.562 kb on + strandat 1828.562 kb on + strandat 1828.563 kb on - strandat 1828.563 kb on - strandat 1828.599 kb on + strandat 1828.691 kb on + strandat 1828.692 kb on - strandat 1828.767 kb on + strandat 1828.768 kb on - strandat 1828.768 kb on - strandat 1828.827 kb on + strandat 1828.827 kb on + strandat 1829.067 kb on + strand, within Psyr_1626at 1829.096 kb on + strand, within Psyr_1626at 1829.096 kb on + strand, within Psyr_1626at 1829.149 kb on + strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.150 kb on - strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.155 kb on + strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.156 kb on - strand, within Psyr_1626at 1829.196 kb on - strand, within Psyr_1626at 1829.214 kb on - strand, within Psyr_1626at 1829.227 kb on + strand, within Psyr_1626at 1829.227 kb on + strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.228 kb on - strand, within Psyr_1626at 1829.253 kb on + strand, within Psyr_1626at 1829.253 kb on + strand, within Psyr_1626at 1829.334 kb on - strand, within Psyr_1626at 1829.334 kb on - strand, within Psyr_1626at 1829.334 kb on - strand, within Psyr_1626at 1829.365 kb on + strand, within Psyr_1626at 1829.365 kb on + strand, within Psyr_1626at 1829.398 kb on - strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.560 kb on + strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.561 kb on - strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.611 kb on + strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.612 kb on - strand, within Psyr_1626at 1829.753 kb on + strandat 1829.797 kb on + strandat 1829.812 kb on + strandat 1829.813 kb on - strandat 1829.813 kb on - strandat 1829.823 kb on - strandat 1830.069 kb on - strand, within Psyr_1627at 1830.069 kb on - strand, within Psyr_1627at 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.405 kb on + strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.407 kb on + strandat 1830.408 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
remove
1,827,932 + Psyr_1625 0.67 +0.7
1,827,932 + Psyr_1625 0.67 +1.2
1,827,933 - Psyr_1625 0.67 +2.9
1,827,933 - Psyr_1625 0.67 -2.5
1,827,933 - Psyr_1625 0.67 +2.7
1,827,933 - Psyr_1625 0.67 +0.9
1,827,934 + Psyr_1625 0.67 +3.1
1,827,934 + Psyr_1625 0.67 +3.1
1,827,934 + Psyr_1625 0.67 +0.4
1,827,934 + Psyr_1625 0.67 +0.2
1,827,935 - Psyr_1625 0.67 +0.5
1,827,935 - Psyr_1625 0.67 +3.4
1,827,941 + Psyr_1625 0.67 -2.3
1,828,174 + Psyr_1625 0.76 -1.2
1,828,174 + Psyr_1625 0.76 -1.3
1,828,174 + Psyr_1625 0.76 +1.9
1,828,174 + Psyr_1625 0.76 +0.4
1,828,174 + Psyr_1625 0.76 -1.6
1,828,175 - Psyr_1625 0.76 -0.4
1,828,175 - Psyr_1625 0.76 -2.4
1,828,175 - Psyr_1625 0.76 +3.1
1,828,175 - Psyr_1625 0.76 +0.3
1,828,196 - Psyr_1625 0.77 -1.8
1,828,196 - Psyr_1625 0.77 -1.5
1,828,196 - Psyr_1625 0.77 -0.3
1,828,196 - Psyr_1625 0.77 -0.1
1,828,199 + Psyr_1625 0.77 +0.4
1,828,199 + Psyr_1625 0.77 +4.3
1,828,199 + Psyr_1625 0.77 -0.1
1,828,199 + Psyr_1625 0.77 +3.3
1,828,199 + Psyr_1625 0.77 -1.4
1,828,199 + Psyr_1625 0.77 +2.5
1,828,199 + Psyr_1625 0.77 -0.3
1,828,199 + Psyr_1625 0.77 +0.3
1,828,199 + Psyr_1625 0.77 +0.2
1,828,199 + Psyr_1625 0.77 +2.7
1,828,199 + Psyr_1625 0.77 +0.8
1,828,199 + Psyr_1625 0.77 -1.7
1,828,199 + Psyr_1625 0.77 +4.6
1,828,199 + Psyr_1625 0.77 +1.9
1,828,199 + Psyr_1625 0.77 -3.6
1,828,199 + Psyr_1625 0.77 +3.1
1,828,199 + Psyr_1625 0.77 +0.9
1,828,200 - Psyr_1625 0.77 -0.1
1,828,200 - Psyr_1625 0.77 -0.1
1,828,200 - Psyr_1625 0.77 -0.3
1,828,200 - Psyr_1625 0.77 -0.4
1,828,200 - Psyr_1625 0.77 +0.7
1,828,200 - Psyr_1625 0.77 +0.9
1,828,200 - Psyr_1625 0.77 +1.9
1,828,200 - Psyr_1625 0.77 -0.5
1,828,200 - Psyr_1625 0.77 +2.3
1,828,200 - Psyr_1625 0.77 -3.2
1,828,200 - Psyr_1625 0.77 -0.1
1,828,200 - Psyr_1625 0.77 -2.0
1,828,200 - Psyr_1625 0.77 +0.7
1,828,200 - Psyr_1625 0.77 +2.5
1,828,200 - Psyr_1625 0.77 +3.4
1,828,200 - Psyr_1625 0.77 -1.0
1,828,202 + Psyr_1625 0.77 +0.9
1,828,203 - Psyr_1625 0.77 +1.4
1,828,203 - Psyr_1625 0.77 -1.5
1,828,205 + Psyr_1625 0.77 +0.9
1,828,205 + Psyr_1625 0.77 -0.4
1,828,205 + Psyr_1625 0.77 +3.1
1,828,205 + Psyr_1625 0.77 +3.3
1,828,205 + Psyr_1625 0.77 +0.2
1,828,205 + Psyr_1625 0.77 +0.9
1,828,205 + Psyr_1625 0.77 +2.7
1,828,205 + Psyr_1625 0.77 -1.0
1,828,205 + Psyr_1625 0.77 +0.9
1,828,205 + Psyr_1625 0.77 +1.9
1,828,205 + Psyr_1625 0.77 -0.1
1,828,206 - Psyr_1625 0.77 +2.3
1,828,206 - Psyr_1625 0.77 +3.1
1,828,206 - Psyr_1625 0.77 -1.6
1,828,206 - Psyr_1625 0.77 -1.2
1,828,206 - Psyr_1625 0.77 -0.3
1,828,206 - Psyr_1625 0.77 -1.1
1,828,206 - Psyr_1625 0.77 +0.9
1,828,206 - Psyr_1625 0.77 +2.3
1,828,206 - Psyr_1625 0.77 -0.8
1,828,206 - Psyr_1625 0.77 +0.9
1,828,206 - Psyr_1625 0.77 -1.0
1,828,206 - Psyr_1625 0.77 +4.6
1,828,206 - Psyr_1625 0.77 -3.8
1,828,206 - Psyr_1625 0.77 +0.2
1,828,229 + Psyr_1625 0.78 +3.1
1,828,230 - Psyr_1625 0.78 -0.9
1,828,284 - Psyr_1625 0.80 -1.7
1,828,562 + -0.5
1,828,562 + -1.3
1,828,563 - +4.3
1,828,563 - +1.9
1,828,599 + +0.5
1,828,691 + +2.3
1,828,692 - -0.1
1,828,767 + +2.5
1,828,768 - -1.5
1,828,768 - +0.4
1,828,827 + +5.1
1,828,827 + +1.9
1,829,067 + Psyr_1626 0.18 -1.3
1,829,096 + Psyr_1626 0.21 -0.4
1,829,096 + Psyr_1626 0.21 +2.9
1,829,149 + Psyr_1626 0.27 +2.9
1,829,150 - Psyr_1626 0.28 +0.2
1,829,150 - Psyr_1626 0.28 +0.7
1,829,150 - Psyr_1626 0.28 -0.9
1,829,155 + Psyr_1626 0.28 +0.7
1,829,155 + Psyr_1626 0.28 -0.0
1,829,156 - Psyr_1626 0.28 -0.1
1,829,156 - Psyr_1626 0.28 -1.7
1,829,156 - Psyr_1626 0.28 +1.9
1,829,156 - Psyr_1626 0.28 -0.7
1,829,156 - Psyr_1626 0.28 +2.3
1,829,156 - Psyr_1626 0.28 -0.9
1,829,196 - Psyr_1626 0.33 -0.3
1,829,214 - Psyr_1626 0.35 -5.5
1,829,227 + Psyr_1626 0.37 -2.1
1,829,227 + Psyr_1626 0.37 -1.1
1,829,228 - Psyr_1626 0.37 +1.9
1,829,228 - Psyr_1626 0.37 -1.0
1,829,228 - Psyr_1626 0.37 -1.5
1,829,228 - Psyr_1626 0.37 -0.8
1,829,228 - Psyr_1626 0.37 +3.3
1,829,228 - Psyr_1626 0.37 -1.7
1,829,253 + Psyr_1626 0.40 -0.7
1,829,253 + Psyr_1626 0.40 +0.0
1,829,334 - Psyr_1626 0.49 +3.4
1,829,334 - Psyr_1626 0.49 -2.6
1,829,334 - Psyr_1626 0.49 -1.8
1,829,365 + Psyr_1626 0.53 -1.9
1,829,365 + Psyr_1626 0.53 +2.3
1,829,398 - Psyr_1626 0.57 -1.2
1,829,560 + Psyr_1626 0.76 +4.0
1,829,560 + Psyr_1626 0.76 +1.9
1,829,560 + Psyr_1626 0.76 +2.3
1,829,560 + Psyr_1626 0.76 +3.9
1,829,560 + Psyr_1626 0.76 +0.1
1,829,560 + Psyr_1626 0.76 +3.7
1,829,561 - Psyr_1626 0.76 +3.6
1,829,561 - Psyr_1626 0.76 +0.6
1,829,561 - Psyr_1626 0.76 -2.9
1,829,561 - Psyr_1626 0.76 -0.5
1,829,561 - Psyr_1626 0.76 -0.5
1,829,561 - Psyr_1626 0.76 +2.5
1,829,561 - Psyr_1626 0.76 -1.0
1,829,611 + Psyr_1626 0.82 -1.5
1,829,611 + Psyr_1626 0.82 +3.4
1,829,611 + Psyr_1626 0.82 +2.7
1,829,611 + Psyr_1626 0.82 +4.9
1,829,611 + Psyr_1626 0.82 -1.6
1,829,611 + Psyr_1626 0.82 -0.3
1,829,612 - Psyr_1626 0.82 +0.9
1,829,612 - Psyr_1626 0.82 +1.9
1,829,612 - Psyr_1626 0.82 +1.9
1,829,753 + -2.1
1,829,797 + +2.3
1,829,812 + +0.2
1,829,813 - -0.7
1,829,813 - -1.6
1,829,823 - +2.5
1,830,069 - Psyr_1627 0.27 +3.5
1,830,069 - Psyr_1627 0.27 -0.4
1,830,405 + -0.1
1,830,405 + +2.7
1,830,405 + -0.9
1,830,407 + -1.8
1,830,407 + -0.1
1,830,407 + -2.1
1,830,408 - -1.9

Or see this region's nucleotide sequence