Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1575

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1574 and Psyr_1575 are separated by 132 nucleotidesPsyr_1575 and Psyr_1576 are separated by 76 nucleotidesPsyr_1576 and Psyr_1577 are separated by 46 nucleotides Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643 _1574 Psyr_1575: Psyr_1575 - conserved hypothetical protein, at 1,770,776 to 1,771,252 _1575 Psyr_1576: Psyr_1576 - Glutamine amidotransferase, class-II, at 1,771,329 to 1,772,129 _1576 Psyr_1577: Psyr_1577 - conserved hypothetical protein, at 1,772,176 to 1,772,700 _1577 Position (kb) 1770 1771 1772Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1769.833 kb on - strand, within Psyr_1574at 1770.031 kb on + strand, within Psyr_1574at 1770.174 kb on + strand, within Psyr_1574at 1770.174 kb on + strand, within Psyr_1574at 1770.174 kb on + strand, within Psyr_1574at 1770.175 kb on - strand, within Psyr_1574at 1770.183 kb on + strand, within Psyr_1574at 1770.184 kb on - strand, within Psyr_1574at 1770.369 kb on + strand, within Psyr_1574at 1770.370 kb on - strand, within Psyr_1574at 1770.370 kb on - strand, within Psyr_1574at 1770.396 kb on + strand, within Psyr_1574at 1770.397 kb on - strand, within Psyr_1574at 1770.397 kb on - strand, within Psyr_1574at 1770.399 kb on + strand, within Psyr_1574at 1770.405 kb on + strand, within Psyr_1574at 1770.406 kb on - strand, within Psyr_1574at 1770.406 kb on - strand, within Psyr_1574at 1770.580 kb on - strandat 1770.659 kb on - strandat 1770.678 kb on + strandat 1770.743 kb on - strandat 1770.763 kb on + strandat 1770.791 kb on + strandat 1770.920 kb on - strand, within Psyr_1575at 1770.920 kb on - strand, within Psyr_1575at 1770.920 kb on - strand, within Psyr_1575at 1771.009 kb on + strand, within Psyr_1575at 1771.010 kb on - strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.187 kb on + strand, within Psyr_1575at 1771.251 kb on - strandat 1771.339 kb on + strandat 1771.449 kb on + strand, within Psyr_1576at 1771.450 kb on - strand, within Psyr_1576at 1771.450 kb on - strand, within Psyr_1576at 1771.559 kb on + strand, within Psyr_1576at 1771.632 kb on - strand, within Psyr_1576at 1771.827 kb on - strand, within Psyr_1576at 1771.827 kb on - strand, within Psyr_1576at 1771.883 kb on + strand, within Psyr_1576at 1772.130 kb on + strandat 1772.131 kb on - strandat 1772.131 kb on - strandat 1772.149 kb on - strandat 1772.188 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,769,833 - Psyr_1574 0.61 +1.0
1,770,031 + Psyr_1574 0.70 -0.2
1,770,174 + Psyr_1574 0.77 -3.2
1,770,174 + Psyr_1574 0.77 +3.2
1,770,174 + Psyr_1574 0.77 +3.2
1,770,175 - Psyr_1574 0.77 +4.3
1,770,183 + Psyr_1574 0.78 -1.1
1,770,184 - Psyr_1574 0.78 +1.6
1,770,369 + Psyr_1574 0.87 -1.4
1,770,370 - Psyr_1574 0.87 +0.8
1,770,370 - Psyr_1574 0.87 +0.0
1,770,396 + Psyr_1574 0.88 +3.0
1,770,397 - Psyr_1574 0.88 +3.9
1,770,397 - Psyr_1574 0.88 +3.3
1,770,399 + Psyr_1574 0.88 +2.8
1,770,405 + Psyr_1574 0.88 -2.5
1,770,406 - Psyr_1574 0.88 +0.6
1,770,406 - Psyr_1574 0.88 -0.7
1,770,580 - +0.0
1,770,659 - +1.6
1,770,678 + +3.7
1,770,743 - +0.7
1,770,763 + +1.6
1,770,791 + +3.8
1,770,920 - Psyr_1575 0.30 +3.8
1,770,920 - Psyr_1575 0.30 +1.6
1,770,920 - Psyr_1575 0.30 -0.2
1,771,009 + Psyr_1575 0.49 -1.4
1,771,010 - Psyr_1575 0.49 -0.2
1,771,040 + Psyr_1575 0.55 -0.1
1,771,040 + Psyr_1575 0.55 +2.3
1,771,040 + Psyr_1575 0.55 +1.6
1,771,040 + Psyr_1575 0.55 -2.7
1,771,040 + Psyr_1575 0.55 +0.0
1,771,040 + Psyr_1575 0.55 +2.8
1,771,040 + Psyr_1575 0.55 +3.2
1,771,040 + Psyr_1575 0.55 +0.0
1,771,040 + Psyr_1575 0.55 +0.8
1,771,040 + Psyr_1575 0.55 -0.3
1,771,040 + Psyr_1575 0.55 +2.6
1,771,040 + Psyr_1575 0.55 +1.0
1,771,040 + Psyr_1575 0.55 +1.0
1,771,040 + Psyr_1575 0.55 +0.0
1,771,040 + Psyr_1575 0.55 +4.8
1,771,040 + Psyr_1575 0.55 +0.5
1,771,040 + Psyr_1575 0.55 -2.9
1,771,040 + Psyr_1575 0.55 +2.0
1,771,040 + Psyr_1575 0.55 +1.1
1,771,040 + Psyr_1575 0.55 +3.0
1,771,040 + Psyr_1575 0.55 +0.4
1,771,040 + Psyr_1575 0.55 +0.9
1,771,040 + Psyr_1575 0.55 +3.0
1,771,040 + Psyr_1575 0.55 +0.1
1,771,040 + Psyr_1575 0.55 +0.5
1,771,040 + Psyr_1575 0.55 +1.0
1,771,041 - Psyr_1575 0.56 -0.4
1,771,041 - Psyr_1575 0.56 -2.6
1,771,041 - Psyr_1575 0.56 -3.9
1,771,041 - Psyr_1575 0.56 -0.6
1,771,041 - Psyr_1575 0.56 +1.2
1,771,041 - Psyr_1575 0.56 +2.3
1,771,041 - Psyr_1575 0.56 -1.4
1,771,041 - Psyr_1575 0.56 -1.7
1,771,041 - Psyr_1575 0.56 +0.0
1,771,041 - Psyr_1575 0.56 -1.6
1,771,041 - Psyr_1575 0.56 -1.4
1,771,041 - Psyr_1575 0.56 +3.0
1,771,041 - Psyr_1575 0.56 +0.0
1,771,041 - Psyr_1575 0.56 +2.6
1,771,041 - Psyr_1575 0.56 +3.6
1,771,041 - Psyr_1575 0.56 +0.0
1,771,041 - Psyr_1575 0.56 +3.2
1,771,041 - Psyr_1575 0.56 -2.3
1,771,041 - Psyr_1575 0.56 +1.1
1,771,041 - Psyr_1575 0.56 +2.3
1,771,041 - Psyr_1575 0.56 +0.9
1,771,041 - Psyr_1575 0.56 -0.5
1,771,041 - Psyr_1575 0.56 +3.2
1,771,045 + Psyr_1575 0.56 +2.3
1,771,045 + Psyr_1575 0.56 +0.4
1,771,045 + Psyr_1575 0.56 +1.0
1,771,045 + Psyr_1575 0.56 +2.8
1,771,045 + Psyr_1575 0.56 +0.0
1,771,045 + Psyr_1575 0.56 +0.1
1,771,045 + Psyr_1575 0.56 +2.0
1,771,045 + Psyr_1575 0.56 -1.0
1,771,045 + Psyr_1575 0.56 -2.2
1,771,046 - Psyr_1575 0.57 +2.8
1,771,046 - Psyr_1575 0.57 +2.3
1,771,046 - Psyr_1575 0.57 -2.0
1,771,046 - Psyr_1575 0.57 -0.4
1,771,046 - Psyr_1575 0.57 -0.7
1,771,046 - Psyr_1575 0.57 -2.0
1,771,046 - Psyr_1575 0.57 -3.4
1,771,187 + Psyr_1575 0.86 -1.0
1,771,251 - +0.6
1,771,339 + +2.8
1,771,449 + Psyr_1576 0.15 -1.6
1,771,450 - Psyr_1576 0.15 +3.3
1,771,450 - Psyr_1576 0.15 +4.5
1,771,559 + Psyr_1576 0.29 +3.5
1,771,632 - Psyr_1576 0.38 -0.2
1,771,827 - Psyr_1576 0.62 -1.6
1,771,827 - Psyr_1576 0.62 -2.1
1,771,883 + Psyr_1576 0.69 +0.3
1,772,130 + +1.3
1,772,131 - +0.0
1,772,131 - +4.0
1,772,149 - -1.6
1,772,188 + +0.0

Or see this region's nucleotide sequence