Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1549 and Psyr_1550 are separated by 0 nucleotides Psyr_1550 and Psyr_1551 are separated by 28 nucleotides Psyr_1551 and Psyr_RNA25 are separated by 92 nucleotides Psyr_RNA25 and Psyr_1552 are separated by 58 nucleotides
Psyr_1549: Psyr_1549 - lipoprotein, putative, at 1,742,241 to 1,743,359
_1549
Psyr_1550: Psyr_1550 - Beta-lactamase-like protein, at 1,743,360 to 1,744,118
_1550
Psyr_1551: Psyr_1551 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,744,147 to 1,744,857
_1551
Psyr_RNA25: Psyr_RNA25 - tRNA-Ser, at 1,744,950 to 1,745,039
_RNA25
Psyr_1552: Psyr_1552 - CDS, at 1,745,098 to 1,745,496
_1552
Position (kb) 1744
1745 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1743.234 kb on + strand, within Psyr_1549 at 1743.357 kb on + strand at 1743.357 kb on + strand at 1743.422 kb on + strand at 1743.423 kb on - strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.427 kb on - strand at 1743.430 kb on + strand at 1743.430 kb on + strand at 1743.430 kb on + strand at 1743.431 kb on - strand at 1743.431 kb on - strand at 1743.431 kb on - strand at 1743.514 kb on + strand, within Psyr_1550 at 1743.514 kb on + strand, within Psyr_1550 at 1743.514 kb on + strand, within Psyr_1550 at 1743.573 kb on + strand, within Psyr_1550 at 1743.574 kb on - strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.783 kb on + strand, within Psyr_1550 at 1743.783 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1744.109 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.934 kb on + strand at 1744.996 kb on + strand, within Psyr_RNA25 at 1745.012 kb on + strand, within Psyr_RNA25 at 1745.040 kb on + strand at 1745.046 kb on + strand at 1745.047 kb on - strand at 1745.069 kb on + strand at 1745.080 kb on + strand at 1745.092 kb on + strand at 1745.113 kb on + strand at 1745.114 kb on - strand at 1745.187 kb on + strand, within Psyr_1552 at 1745.187 kb on + strand, within Psyr_1552 at 1745.187 kb on + strand, within Psyr_1552 at 1745.187 kb on + strand, within Psyr_1552 at 1745.187 kb on + strand, within Psyr_1552 at 1745.187 kb on + strand, within Psyr_1552 at 1745.188 kb on - strand, within Psyr_1552 at 1745.188 kb on - strand, within Psyr_1552 at 1745.188 kb on - strand, within Psyr_1552 at 1745.188 kb on - strand, within Psyr_1552 at 1745.188 kb on - strand, within Psyr_1552 at 1745.262 kb on + strand, within Psyr_1552 at 1745.262 kb on + strand, within Psyr_1552 at 1745.263 kb on - strand, within Psyr_1552 at 1745.263 kb on - strand, within Psyr_1552 at 1745.263 kb on - strand, within Psyr_1552 at 1745.263 kb on - strand, within Psyr_1552 at 1745.263 kb on - strand, within Psyr_1552 at 1745.269 kb on + strand, within Psyr_1552 at 1745.269 kb on + strand, within Psyr_1552 at 1745.269 kb on + strand, within Psyr_1552 at 1745.269 kb on + strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.270 kb on - strand, within Psyr_1552 at 1745.278 kb on - strand, within Psyr_1552 at 1745.316 kb on + strand, within Psyr_1552 at 1745.316 kb on + strand, within Psyr_1552 at 1745.317 kb on - strand, within Psyr_1552 at 1745.317 kb on - strand, within Psyr_1552 at 1745.317 kb on - strand, within Psyr_1552 at 1745.498 kb on + strand at 1745.498 kb on + strand at 1745.499 kb on - strand at 1745.499 kb on - strand at 1745.499 kb on - strand at 1745.551 kb on - strand at 1745.551 kb on - strand at 1745.551 kb on - strand at 1745.551 kb on - strand at 1745.584 kb on + strand at 1745.613 kb on + strand at 1745.613 kb on + strand at 1745.614 kb on - strand at 1745.655 kb on + strand at 1745.655 kb on + strand at 1745.700 kb on + strand at 1745.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,743,234 + Psyr_1549 0.89 +4.0 1,743,357 + -1.3 1,743,357 + +2.0 1,743,422 + -1.0 1,743,423 - -2.1 1,743,426 + +2.4 1,743,426 + -1.7 1,743,426 + -1.0 1,743,426 + -3.0 1,743,426 + -0.3 1,743,426 + -2.0 1,743,426 + -2.0 1,743,426 + -2.4 1,743,426 + -0.8 1,743,426 + +1.0 1,743,426 + -0.2 1,743,426 + +2.0 1,743,426 + -0.7 1,743,426 + -1.9 1,743,426 + -2.0 1,743,426 + +3.5 1,743,426 + -1.7 1,743,426 + +3.9 1,743,426 + +2.4 1,743,426 + +0.0 1,743,426 + +1.0 1,743,427 - +0.0 1,743,427 - +2.0 1,743,427 - -3.6 1,743,427 - +3.2 1,743,427 - +0.0 1,743,430 + +1.6 1,743,430 + +4.3 1,743,430 + +0.4 1,743,431 - +2.0 1,743,431 - +1.0 1,743,431 - +2.9 1,743,514 + Psyr_1550 0.20 -2.3 1,743,514 + Psyr_1550 0.20 -0.4 1,743,514 + Psyr_1550 0.20 -0.4 1,743,573 + Psyr_1550 0.28 -0.2 1,743,574 - Psyr_1550 0.28 +1.6 1,743,588 + Psyr_1550 0.30 +2.4 1,743,588 + Psyr_1550 0.30 +0.0 1,743,783 + Psyr_1550 0.56 +1.0 1,743,783 + Psyr_1550 0.56 +3.6 1,743,796 + Psyr_1550 0.57 -2.1 1,743,796 + Psyr_1550 0.57 -1.9 1,743,796 + Psyr_1550 0.57 +3.0 1,743,796 + Psyr_1550 0.57 +1.6 1,743,796 + Psyr_1550 0.57 +2.9 1,743,799 + Psyr_1550 0.58 -1.0 1,743,799 + Psyr_1550 0.58 +1.2 1,743,799 + Psyr_1550 0.58 -0.1 1,743,799 + Psyr_1550 0.58 +4.6 1,744,109 + +3.4 1,744,125 + +0.4 1,744,125 + +1.0 1,744,125 + +0.0 1,744,125 + +3.7 1,744,125 + +1.6 1,744,129 + +3.4 1,744,129 + +2.0 1,744,129 + +2.4 1,744,129 + +0.0 1,744,934 + +2.0 1,744,996 + Psyr_RNA25 0.51 -0.7 1,745,012 + Psyr_RNA25 0.69 +1.0 1,745,040 + -0.3 1,745,046 + +2.9 1,745,047 - -4.0 1,745,069 + -2.3 1,745,080 + +3.2 1,745,092 + -1.0 1,745,113 + +0.2 1,745,114 - -2.8 1,745,187 + Psyr_1552 0.22 +3.2 1,745,187 + Psyr_1552 0.22 +2.6 1,745,187 + Psyr_1552 0.22 +1.0 1,745,187 + Psyr_1552 0.22 -0.7 1,745,187 + Psyr_1552 0.22 +3.9 1,745,187 + Psyr_1552 0.22 +0.6 1,745,188 - Psyr_1552 0.23 -0.1 1,745,188 - Psyr_1552 0.23 +1.6 1,745,188 - Psyr_1552 0.23 +0.0 1,745,188 - Psyr_1552 0.23 -2.0 1,745,188 - Psyr_1552 0.23 +0.6 1,745,262 + Psyr_1552 0.41 -0.3 1,745,262 + Psyr_1552 0.41 +1.0 1,745,263 - Psyr_1552 0.41 -1.0 1,745,263 - Psyr_1552 0.41 +0.5 1,745,263 - Psyr_1552 0.41 -0.5 1,745,263 - Psyr_1552 0.41 -3.8 1,745,263 - Psyr_1552 0.41 +2.0 1,745,269 + Psyr_1552 0.43 +2.4 1,745,269 + Psyr_1552 0.43 +2.0 1,745,269 + Psyr_1552 0.43 -1.4 1,745,269 + Psyr_1552 0.43 -0.3 1,745,270 - Psyr_1552 0.43 +0.3 1,745,270 - Psyr_1552 0.43 +2.6 1,745,270 - Psyr_1552 0.43 +3.2 1,745,270 - Psyr_1552 0.43 -0.2 1,745,270 - Psyr_1552 0.43 +2.0 1,745,270 - Psyr_1552 0.43 +2.9 1,745,270 - Psyr_1552 0.43 +1.0 1,745,270 - Psyr_1552 0.43 +1.9 1,745,270 - Psyr_1552 0.43 +1.6 1,745,270 - Psyr_1552 0.43 -2.4 1,745,270 - Psyr_1552 0.43 -0.5 1,745,270 - Psyr_1552 0.43 +2.6 1,745,270 - Psyr_1552 0.43 -1.6 1,745,270 - Psyr_1552 0.43 +4.9 1,745,278 - Psyr_1552 0.45 +2.9 1,745,316 + Psyr_1552 0.55 +3.6 1,745,316 + Psyr_1552 0.55 -0.2 1,745,317 - Psyr_1552 0.55 +2.4 1,745,317 - Psyr_1552 0.55 +0.9 1,745,317 - Psyr_1552 0.55 -2.7 1,745,498 + -2.4 1,745,498 + +2.4 1,745,499 - -2.7 1,745,499 - +1.0 1,745,499 - +0.0 1,745,551 - +3.2 1,745,551 - +1.6 1,745,551 - +0.9 1,745,551 - +3.9 1,745,584 + +2.6 1,745,613 + +1.6 1,745,613 + +3.9 1,745,614 - -1.7 1,745,655 + +2.4 1,745,655 + +3.0 1,745,700 + +2.0 1,745,785 - -2.0
Or see this region's nucleotide sequence