Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1550

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1549 and Psyr_1550 are separated by 0 nucleotidesPsyr_1550 and Psyr_1551 are separated by 28 nucleotidesPsyr_1551 and Psyr_RNA25 are separated by 92 nucleotidesPsyr_RNA25 and Psyr_1552 are separated by 58 nucleotides Psyr_1549: Psyr_1549 - lipoprotein, putative, at 1,742,241 to 1,743,359 _1549 Psyr_1550: Psyr_1550 - Beta-lactamase-like protein, at 1,743,360 to 1,744,118 _1550 Psyr_1551: Psyr_1551 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,744,147 to 1,744,857 _1551 Psyr_RNA25: Psyr_RNA25 - tRNA-Ser, at 1,744,950 to 1,745,039 _RNA25 Psyr_1552: Psyr_1552 - CDS, at 1,745,098 to 1,745,496 _1552 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1742.604 kb on + strand, within Psyr_1549at 1742.604 kb on + strand, within Psyr_1549at 1742.799 kb on + strand, within Psyr_1549at 1742.799 kb on + strand, within Psyr_1549at 1742.799 kb on + strand, within Psyr_1549at 1742.800 kb on - strand, within Psyr_1549at 1742.800 kb on - strand, within Psyr_1549at 1742.939 kb on + strand, within Psyr_1549at 1742.939 kb on + strand, within Psyr_1549at 1742.939 kb on + strand, within Psyr_1549at 1742.940 kb on - strand, within Psyr_1549at 1742.964 kb on + strand, within Psyr_1549at 1742.964 kb on + strand, within Psyr_1549at 1743.120 kb on + strand, within Psyr_1549at 1743.120 kb on + strand, within Psyr_1549at 1743.120 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.123 kb on + strand, within Psyr_1549at 1743.124 kb on - strand, within Psyr_1549at 1743.124 kb on - strand, within Psyr_1549at 1743.234 kb on + strand, within Psyr_1549at 1743.357 kb on + strandat 1743.357 kb on + strandat 1743.422 kb on + strandat 1743.423 kb on - strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.426 kb on + strandat 1743.427 kb on - strandat 1743.427 kb on - strandat 1743.427 kb on - strandat 1743.427 kb on - strandat 1743.427 kb on - strandat 1743.430 kb on + strandat 1743.430 kb on + strandat 1743.430 kb on + strandat 1743.431 kb on - strandat 1743.431 kb on - strandat 1743.431 kb on - strandat 1743.514 kb on + strand, within Psyr_1550at 1743.514 kb on + strand, within Psyr_1550at 1743.514 kb on + strand, within Psyr_1550at 1743.573 kb on + strand, within Psyr_1550at 1743.574 kb on - strand, within Psyr_1550at 1743.588 kb on + strand, within Psyr_1550at 1743.588 kb on + strand, within Psyr_1550at 1743.783 kb on + strand, within Psyr_1550at 1743.783 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.796 kb on + strand, within Psyr_1550at 1743.799 kb on + strand, within Psyr_1550at 1743.799 kb on + strand, within Psyr_1550at 1743.799 kb on + strand, within Psyr_1550at 1743.799 kb on + strand, within Psyr_1550at 1744.109 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.934 kb on + strandat 1744.996 kb on + strand, within Psyr_RNA25at 1745.012 kb on + strand, within Psyr_RNA25at 1745.040 kb on + strandat 1745.046 kb on + strandat 1745.047 kb on - strandat 1745.069 kb on + strandat 1745.080 kb on + strandat 1745.092 kb on + strandat 1745.113 kb on + strandat 1745.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,742,604 + Psyr_1549 0.32 -0.6
1,742,604 + Psyr_1549 0.32 -0.2
1,742,799 + Psyr_1549 0.50 -2.0
1,742,799 + Psyr_1549 0.50 -2.1
1,742,799 + Psyr_1549 0.50 -0.1
1,742,800 - Psyr_1549 0.50 +1.6
1,742,800 - Psyr_1549 0.50 +3.7
1,742,939 + Psyr_1549 0.62 -1.1
1,742,939 + Psyr_1549 0.62 +0.3
1,742,939 + Psyr_1549 0.62 +2.0
1,742,940 - Psyr_1549 0.62 +3.5
1,742,964 + Psyr_1549 0.65 -2.5
1,742,964 + Psyr_1549 0.65 -3.0
1,743,120 + Psyr_1549 0.79 -2.4
1,743,120 + Psyr_1549 0.79 +1.6
1,743,120 + Psyr_1549 0.79 -1.1
1,743,123 + Psyr_1549 0.79 +0.3
1,743,123 + Psyr_1549 0.79 -2.2
1,743,123 + Psyr_1549 0.79 +2.0
1,743,123 + Psyr_1549 0.79 +3.5
1,743,123 + Psyr_1549 0.79 +0.3
1,743,123 + Psyr_1549 0.79 -1.4
1,743,123 + Psyr_1549 0.79 +2.9
1,743,123 + Psyr_1549 0.79 +0.0
1,743,123 + Psyr_1549 0.79 +3.6
1,743,123 + Psyr_1549 0.79 -0.2
1,743,124 - Psyr_1549 0.79 +2.0
1,743,124 - Psyr_1549 0.79 +2.0
1,743,234 + Psyr_1549 0.89 +4.0
1,743,357 + -1.3
1,743,357 + +2.0
1,743,422 + -1.0
1,743,423 - -2.1
1,743,426 + +2.4
1,743,426 + -1.7
1,743,426 + -1.0
1,743,426 + -3.0
1,743,426 + -0.3
1,743,426 + -2.0
1,743,426 + -2.0
1,743,426 + -2.4
1,743,426 + -0.8
1,743,426 + +1.0
1,743,426 + -0.2
1,743,426 + +2.0
1,743,426 + -0.7
1,743,426 + -1.9
1,743,426 + -2.0
1,743,426 + +3.5
1,743,426 + -1.7
1,743,426 + +3.9
1,743,426 + +2.4
1,743,426 + +0.0
1,743,426 + +1.0
1,743,427 - +0.0
1,743,427 - +2.0
1,743,427 - -3.6
1,743,427 - +3.2
1,743,427 - +0.0
1,743,430 + +1.6
1,743,430 + +4.3
1,743,430 + +0.4
1,743,431 - +2.0
1,743,431 - +1.0
1,743,431 - +2.9
1,743,514 + Psyr_1550 0.20 -2.3
1,743,514 + Psyr_1550 0.20 -0.4
1,743,514 + Psyr_1550 0.20 -0.4
1,743,573 + Psyr_1550 0.28 -0.2
1,743,574 - Psyr_1550 0.28 +1.6
1,743,588 + Psyr_1550 0.30 +2.4
1,743,588 + Psyr_1550 0.30 +0.0
1,743,783 + Psyr_1550 0.56 +1.0
1,743,783 + Psyr_1550 0.56 +3.6
1,743,796 + Psyr_1550 0.57 -2.1
1,743,796 + Psyr_1550 0.57 -1.9
1,743,796 + Psyr_1550 0.57 +3.0
1,743,796 + Psyr_1550 0.57 +1.6
1,743,796 + Psyr_1550 0.57 +2.9
1,743,799 + Psyr_1550 0.58 -1.0
1,743,799 + Psyr_1550 0.58 +1.2
1,743,799 + Psyr_1550 0.58 -0.1
1,743,799 + Psyr_1550 0.58 +4.6
1,744,109 + +3.4
1,744,125 + +0.4
1,744,125 + +1.0
1,744,125 + +0.0
1,744,125 + +3.7
1,744,125 + +1.6
1,744,129 + +3.4
1,744,129 + +2.0
1,744,129 + +2.4
1,744,129 + +0.0
1,744,934 + +2.0
1,744,996 + Psyr_RNA25 0.51 -0.7
1,745,012 + Psyr_RNA25 0.69 +1.0
1,745,040 + -0.3
1,745,046 + +2.9
1,745,047 - -4.0
1,745,069 + -2.3
1,745,080 + +3.2
1,745,092 + -1.0
1,745,113 + +0.2
1,745,114 - -2.8

Or see this region's nucleotide sequence