Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1543

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1542 and Psyr_1543 are separated by 80 nucleotidesPsyr_1543 and Psyr_1544 are separated by 140 nucleotidesPsyr_1544 and Psyr_1545 are separated by 34 nucleotides Psyr_1542: Psyr_1542 - quinolinate synthetase, at 1,735,836 to 1,736,894 _1542 Psyr_1543: Psyr_1543 - Peptidase M48, Ste24p, at 1,736,975 to 1,738,408 _1543 Psyr_1544: Psyr_1544 - SirA-like protein, at 1,738,549 to 1,738,800 _1544 Psyr_1545: Psyr_1545 - Protein of unknown function UPF0118, at 1,738,835 to 1,739,905 _1545 Position (kb) 1736 1737 1738 1739Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 1735.980 kb on + strand, within Psyr_1542at 1735.981 kb on - strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1736.086 kb on + strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.240 kb on + strand, within Psyr_1542at 1736.241 kb on - strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.388 kb on + strand, within Psyr_1542at 1736.389 kb on - strand, within Psyr_1542at 1736.389 kb on - strand, within Psyr_1542at 1736.389 kb on - strand, within Psyr_1542at 1736.640 kb on + strand, within Psyr_1542at 1736.641 kb on - strand, within Psyr_1542at 1736.641 kb on - strand, within Psyr_1542at 1736.747 kb on + strand, within Psyr_1542at 1736.748 kb on - strand, within Psyr_1542at 1736.748 kb on - strand, within Psyr_1542at 1736.827 kb on + strandat 1736.827 kb on + strandat 1736.828 kb on - strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.944 kb on - strandat 1736.944 kb on - strandat 1736.944 kb on - strandat 1736.944 kb on - strandat 1737.129 kb on + strand, within Psyr_1543at 1737.130 kb on - strand, within Psyr_1543at 1737.195 kb on + strand, within Psyr_1543at 1737.310 kb on - strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.409 kb on + strand, within Psyr_1543at 1737.409 kb on + strand, within Psyr_1543at 1737.409 kb on + strand, within Psyr_1543at 1737.410 kb on - strand, within Psyr_1543at 1737.410 kb on - strand, within Psyr_1543at 1737.410 kb on - strand, within Psyr_1543at 1737.579 kb on + strand, within Psyr_1543at 1737.580 kb on - strand, within Psyr_1543at 1737.580 kb on - strand, within Psyr_1543at 1737.580 kb on - strand, within Psyr_1543at 1737.613 kb on - strand, within Psyr_1543at 1737.613 kb on - strand, within Psyr_1543at 1737.613 kb on - strand, within Psyr_1543at 1738.212 kb on + strand, within Psyr_1543at 1738.212 kb on + strand, within Psyr_1543at 1738.213 kb on - strand, within Psyr_1543at 1738.213 kb on - strand, within Psyr_1543at 1738.436 kb on + strandat 1738.436 kb on + strandat 1738.437 kb on - strandat 1738.437 kb on - strandat 1738.441 kb on + strandat 1738.441 kb on + strandat 1738.441 kb on + strandat 1738.441 kb on + strandat 1738.441 kb on + strandat 1738.441 kb on + strandat 1738.442 kb on - strandat 1738.475 kb on + strandat 1738.475 kb on + strandat 1738.475 kb on + strandat 1738.475 kb on + strandat 1738.475 kb on + strandat 1738.476 kb on - strandat 1738.476 kb on - strandat 1738.476 kb on - strandat 1738.544 kb on - strandat 1738.563 kb on - strandat 1738.563 kb on - strandat 1738.679 kb on + strand, within Psyr_1544at 1738.679 kb on + strand, within Psyr_1544at 1738.679 kb on + strand, within Psyr_1544at 1738.679 kb on + strand, within Psyr_1544at 1738.679 kb on + strand, within Psyr_1544at 1738.679 kb on + strand, within Psyr_1544at 1738.679 kb on + strand, within Psyr_1544at 1738.679 kb on + strand, within Psyr_1544at 1738.680 kb on - strand, within Psyr_1544at 1738.680 kb on - strand, within Psyr_1544at 1738.680 kb on - strand, within Psyr_1544at 1738.774 kb on + strand, within Psyr_1544at 1738.774 kb on + strand, within Psyr_1544at 1738.774 kb on + strand, within Psyr_1544at 1738.775 kb on - strandat 1738.775 kb on - strandat 1738.868 kb on + strandat 1738.868 kb on + strandat 1738.868 kb on + strandat 1738.868 kb on + strandat 1738.869 kb on - strandat 1738.869 kb on - strandat 1738.869 kb on - strandat 1738.869 kb on - strandat 1739.073 kb on + strand, within Psyr_1545at 1739.074 kb on - strand, within Psyr_1545at 1739.074 kb on - strand, within Psyr_1545at 1739.121 kb on + strand, within Psyr_1545at 1739.150 kb on - strand, within Psyr_1545at 1739.178 kb on + strand, within Psyr_1545at 1739.178 kb on + strand, within Psyr_1545at 1739.178 kb on + strand, within Psyr_1545at 1739.179 kb on - strand, within Psyr_1545at 1739.179 kb on - strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.327 kb on + strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strandat 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.328 kb on - strand, within Psyr_1545at 1739.403 kb on - strand, within Psyr_1545at 1739.403 kb on - strand, within Psyr_1545at 1739.403 kb on - strand, within Psyr_1545

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,735,980 + Psyr_1542 0.14 -1.1
1,735,981 - Psyr_1542 0.14 +2.6
1,735,983 + Psyr_1542 0.14 +2.1
1,735,983 + Psyr_1542 0.14 -0.6
1,735,983 + Psyr_1542 0.14 -0.7
1,735,983 + Psyr_1542 0.14 +3.2
1,735,983 + Psyr_1542 0.14 +0.9
1,735,983 + Psyr_1542 0.14 +3.6
1,735,984 - Psyr_1542 0.14 -1.1
1,735,984 - Psyr_1542 0.14 -3.2
1,735,984 - Psyr_1542 0.14 +2.6
1,735,984 - Psyr_1542 0.14 -0.4
1,736,086 + Psyr_1542 0.24 -0.4
1,736,087 - Psyr_1542 0.24 -3.7
1,736,087 - Psyr_1542 0.24 -0.9
1,736,087 - Psyr_1542 0.24 -1.4
1,736,087 - Psyr_1542 0.24 -3.5
1,736,087 - Psyr_1542 0.24 -2.7
1,736,240 + Psyr_1542 0.38 +2.1
1,736,241 - Psyr_1542 0.38 +0.1
1,736,253 + Psyr_1542 0.39 +0.8
1,736,253 + Psyr_1542 0.39 -0.9
1,736,253 + Psyr_1542 0.39 -1.8
1,736,254 - Psyr_1542 0.39 -0.2
1,736,254 - Psyr_1542 0.39 -1.5
1,736,254 - Psyr_1542 0.39 -3.7
1,736,254 - Psyr_1542 0.39 -0.4
1,736,254 - Psyr_1542 0.39 -0.8
1,736,254 - Psyr_1542 0.39 +0.1
1,736,388 + Psyr_1542 0.52 +1.0
1,736,389 - Psyr_1542 0.52 -2.5
1,736,389 - Psyr_1542 0.52 +0.4
1,736,389 - Psyr_1542 0.52 +1.6
1,736,640 + Psyr_1542 0.76 -1.4
1,736,641 - Psyr_1542 0.76 +0.1
1,736,641 - Psyr_1542 0.76 -1.0
1,736,747 + Psyr_1542 0.86 +3.1
1,736,748 - Psyr_1542 0.86 +0.5
1,736,748 - Psyr_1542 0.86 -0.8
1,736,827 + -0.6
1,736,827 + +0.7
1,736,828 - +1.1
1,736,943 + +2.4
1,736,943 + +2.4
1,736,943 + -2.7
1,736,943 + -2.7
1,736,943 + -2.0
1,736,943 + -0.6
1,736,943 + -1.1
1,736,943 + -0.0
1,736,943 + -2.1
1,736,944 - +2.6
1,736,944 - +2.6
1,736,944 - -2.8
1,736,944 - -0.9
1,737,129 + Psyr_1543 0.11 -4.0
1,737,130 - Psyr_1543 0.11 +1.0
1,737,195 + Psyr_1543 0.15 -2.5
1,737,310 - Psyr_1543 0.23 -3.2
1,737,405 + Psyr_1543 0.30 -0.5
1,737,405 + Psyr_1543 0.30 +3.5
1,737,405 + Psyr_1543 0.30 +0.0
1,737,405 + Psyr_1543 0.30 -2.8
1,737,405 + Psyr_1543 0.30 -2.0
1,737,405 + Psyr_1543 0.30 -0.5
1,737,406 - Psyr_1543 0.30 -2.9
1,737,406 - Psyr_1543 0.30 -2.0
1,737,406 - Psyr_1543 0.30 +2.0
1,737,406 - Psyr_1543 0.30 -2.2
1,737,406 - Psyr_1543 0.30 +2.6
1,737,406 - Psyr_1543 0.30 +2.4
1,737,406 - Psyr_1543 0.30 -2.0
1,737,406 - Psyr_1543 0.30 -1.8
1,737,406 - Psyr_1543 0.30 -1.6
1,737,406 - Psyr_1543 0.30 -1.7
1,737,409 + Psyr_1543 0.30 +0.0
1,737,409 + Psyr_1543 0.30 +2.4
1,737,409 + Psyr_1543 0.30 -1.6
1,737,410 - Psyr_1543 0.30 -1.4
1,737,410 - Psyr_1543 0.30 +0.0
1,737,410 - Psyr_1543 0.30 -1.4
1,737,579 + Psyr_1543 0.42 -1.4
1,737,580 - Psyr_1543 0.42 -1.9
1,737,580 - Psyr_1543 0.42 -1.5
1,737,580 - Psyr_1543 0.42 -0.8
1,737,613 - Psyr_1543 0.44 -2.4
1,737,613 - Psyr_1543 0.44 +1.0
1,737,613 - Psyr_1543 0.44 -1.2
1,738,212 + Psyr_1543 0.86 -3.2
1,738,212 + Psyr_1543 0.86 +0.0
1,738,213 - Psyr_1543 0.86 -1.9
1,738,213 - Psyr_1543 0.86 -3.4
1,738,436 + -1.4
1,738,436 + -1.2
1,738,437 - -0.9
1,738,437 - +0.4
1,738,441 + -1.0
1,738,441 + -2.9
1,738,441 + -3.4
1,738,441 + +3.9
1,738,441 + -1.6
1,738,441 + -2.1
1,738,442 - -0.3
1,738,475 + -1.7
1,738,475 + +2.4
1,738,475 + +1.0
1,738,475 + -1.8
1,738,475 + +0.0
1,738,476 - -0.7
1,738,476 - -0.8
1,738,476 - +2.0
1,738,544 - -5.0
1,738,563 - +0.0
1,738,563 - +1.0
1,738,679 + Psyr_1544 0.52 -2.5
1,738,679 + Psyr_1544 0.52 +0.0
1,738,679 + Psyr_1544 0.52 +0.0
1,738,679 + Psyr_1544 0.52 -4.0
1,738,679 + Psyr_1544 0.52 -3.0
1,738,679 + Psyr_1544 0.52 -2.8
1,738,679 + Psyr_1544 0.52 -4.6
1,738,679 + Psyr_1544 0.52 -4.2
1,738,680 - Psyr_1544 0.52 -4.8
1,738,680 - Psyr_1544 0.52 -3.4
1,738,680 - Psyr_1544 0.52 -5.9
1,738,774 + Psyr_1544 0.89 -1.1
1,738,774 + Psyr_1544 0.89 +0.0
1,738,774 + Psyr_1544 0.89 -4.5
1,738,775 - -3.4
1,738,775 - -2.4
1,738,868 + +4.0
1,738,868 + -0.2
1,738,868 + -1.7
1,738,868 + +3.5
1,738,869 - +2.9
1,738,869 - -2.0
1,738,869 - +2.6
1,738,869 - +2.8
1,739,073 + Psyr_1545 0.22 +0.8
1,739,074 - Psyr_1545 0.22 +2.9
1,739,074 - Psyr_1545 0.22 +2.6
1,739,121 + Psyr_1545 0.27 +1.5
1,739,150 - Psyr_1545 0.29 +0.6
1,739,178 + Psyr_1545 0.32 +0.5
1,739,178 + Psyr_1545 0.32 +0.0
1,739,178 + Psyr_1545 0.32 +2.6
1,739,179 - Psyr_1545 0.32 -0.2
1,739,179 - Psyr_1545 0.32 +2.0
1,739,327 + Psyr_1545 0.46 -1.5
1,739,327 + Psyr_1545 0.46 +3.9
1,739,327 + Psyr_1545 0.46 -1.7
1,739,327 + Psyr_1545 0.46 +4.0
1,739,327 + Psyr_1545 0.46 +0.3
1,739,327 + Psyr_1545 0.46 -1.1
1,739,327 + Psyr_1545 0.46 -1.0
1,739,327 + Psyr_1545 0.46 +4.0
1,739,328 - Psyr_1545 0.46 -2.5
1,739,328 - Psyr_1545 0.46 -2.7
1,739,328 - Psyr_1545 0.46 +2.9
1,739,328 - Psyr_1545 0.46 -0.6
1,739,328 - +0.0
1,739,328 - Psyr_1545 0.46 -1.2
1,739,328 - Psyr_1545 0.46 +0.0
1,739,328 - Psyr_1545 0.46 +4.6
1,739,328 - Psyr_1545 0.46 -1.7
1,739,328 - Psyr_1545 0.46 +3.5
1,739,328 - Psyr_1545 0.46 -0.1
1,739,403 - Psyr_1545 0.53 -1.8
1,739,403 - Psyr_1545 0.53 -1.0
1,739,403 - Psyr_1545 0.53 -0.5

Or see this region's nucleotide sequence