Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1488 and Psyr_1489 are separated by 959 nucleotides Psyr_1489 and Psyr_1490 are separated by 126 nucleotides Psyr_1490 and Psyr_1491 are separated by 125 nucleotides
Psyr_1488: Psyr_1488 - Bile acid:sodium symporter, at 1,675,584 to 1,676,327
_1488
Psyr_1489: Psyr_1489 - hypothetical protein, at 1,677,287 to 1,677,565
_1489
Psyr_1490: Psyr_1490 - conserved domain protein, at 1,677,692 to 1,678,069
_1490
Psyr_1491: Psyr_1491 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,678,195 to 1,679,814
_1491
Position (kb) 1677
1678 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1676.287 kb on + strand at 1676.287 kb on + strand at 1676.287 kb on + strand at 1676.287 kb on + strand at 1676.287 kb on + strand at 1676.288 kb on - strand at 1676.288 kb on - strand at 1676.288 kb on - strand at 1676.311 kb on - strand at 1676.311 kb on - strand at 1676.371 kb on + strand at 1676.374 kb on + strand at 1676.374 kb on + strand at 1676.374 kb on + strand at 1676.375 kb on - strand at 1676.380 kb on + strand at 1676.381 kb on - strand at 1676.387 kb on + strand at 1676.476 kb on + strand at 1676.480 kb on - strand at 1676.489 kb on + strand at 1676.490 kb on - strand at 1676.498 kb on + strand at 1676.498 kb on + strand at 1676.499 kb on - strand at 1676.536 kb on + strand at 1676.536 kb on + strand at 1676.536 kb on + strand at 1676.536 kb on + strand at 1676.536 kb on + strand at 1676.536 kb on + strand at 1676.536 kb on + strand at 1676.536 kb on + strand at 1676.537 kb on - strand at 1676.537 kb on - strand at 1676.537 kb on - strand at 1676.537 kb on - strand at 1676.538 kb on + strand at 1676.684 kb on + strand at 1676.693 kb on + strand at 1676.693 kb on + strand at 1676.694 kb on - strand at 1676.694 kb on - strand at 1676.694 kb on - strand at 1676.705 kb on + strand at 1676.751 kb on + strand at 1676.751 kb on + strand at 1676.751 kb on + strand at 1676.751 kb on + strand at 1676.751 kb on + strand at 1676.751 kb on + strand at 1676.751 kb on + strand at 1676.751 kb on + strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.752 kb on - strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.771 kb on + strand at 1676.772 kb on - strand at 1676.772 kb on - strand at 1676.772 kb on - strand at 1676.772 kb on - strand at 1676.851 kb on + strand at 1676.851 kb on + strand at 1676.869 kb on - strand at 1676.937 kb on + strand at 1676.937 kb on + strand at 1676.938 kb on - strand at 1676.954 kb on + strand at 1676.954 kb on + strand at 1676.955 kb on - strand at 1676.979 kb on - strand at 1676.979 kb on - strand at 1677.042 kb on + strand at 1677.135 kb on - strand at 1677.135 kb on - strand at 1677.135 kb on - strand at 1677.154 kb on + strand at 1677.247 kb on + strand at 1677.247 kb on + strand at 1677.247 kb on + strand at 1677.248 kb on - strand at 1677.261 kb on + strand at 1677.262 kb on - strand at 1677.286 kb on - strand at 1677.286 kb on - strand at 1677.288 kb on + strand at 1677.288 kb on + strand at 1677.289 kb on - strand at 1677.289 kb on - strand at 1677.289 kb on - strand at 1677.289 kb on - strand at 1677.317 kb on - strand, within Psyr_1489 at 1677.317 kb on - strand, within Psyr_1489 at 1677.317 kb on - strand, within Psyr_1489 at 1677.344 kb on - strand, within Psyr_1489 at 1677.369 kb on + strand, within Psyr_1489 at 1677.450 kb on + strand, within Psyr_1489 at 1677.450 kb on + strand, within Psyr_1489 at 1677.451 kb on - strand, within Psyr_1489 at 1677.480 kb on + strand, within Psyr_1489 at 1677.481 kb on - strand, within Psyr_1489 at 1677.481 kb on - strand, within Psyr_1489 at 1677.481 kb on - strand, within Psyr_1489 at 1677.481 kb on - strand, within Psyr_1489 at 1677.571 kb on + strand at 1677.571 kb on + strand at 1677.572 kb on - strand at 1677.572 kb on - strand at 1677.572 kb on - strand at 1677.619 kb on + strand at 1677.619 kb on + strand at 1677.619 kb on + strand at 1677.620 kb on - strand at 1677.620 kb on - strand at 1677.620 kb on - strand at 1677.620 kb on - strand at 1677.620 kb on - strand at 1677.644 kb on - strand at 1677.672 kb on + strand at 1678.074 kb on + strand at 1678.075 kb on - strand at 1678.075 kb on - strand at 1678.075 kb on - strand at 1678.075 kb on - strand at 1678.116 kb on + strand at 1678.116 kb on + strand at 1678.116 kb on + strand at 1678.116 kb on + strand at 1678.116 kb on + strand at 1678.116 kb on + strand at 1678.116 kb on + strand at 1678.117 kb on - strand at 1678.117 kb on - strand at 1678.117 kb on - strand at 1678.117 kb on - strand at 1678.117 kb on - strand at 1678.117 kb on - strand at 1678.119 kb on - strand at 1678.119 kb on - strand at 1678.143 kb on + strand at 1678.143 kb on + strand at 1678.143 kb on + strand at 1678.143 kb on + strand at 1678.183 kb on + strand at 1678.183 kb on + strand at 1678.183 kb on + strand at 1678.183 kb on + strand at 1678.183 kb on + strand at 1678.184 kb on - strand at 1678.184 kb on - strand at 1678.184 kb on - strand at 1678.184 kb on - strand at 1678.184 kb on - strand at 1678.184 kb on - strand at 1678.191 kb on + strand at 1678.192 kb on - strand at 1678.192 kb on - strand at 1678.196 kb on + strand at 1678.196 kb on + strand at 1678.197 kb on - strand at 1678.197 kb on - strand at 1678.231 kb on - strand at 1678.404 kb on + strand, within Psyr_1491 at 1678.404 kb on + strand, within Psyr_1491 at 1678.404 kb on + strand, within Psyr_1491 at 1678.404 kb on + strand, within Psyr_1491 at 1678.404 kb on + strand, within Psyr_1491 at 1678.404 kb on + strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491 at 1678.405 kb on - strand, within Psyr_1491
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,676,287 + -2.4 1,676,287 + +0.2 1,676,287 + +0.3 1,676,287 + +3.2 1,676,287 + +2.9 1,676,288 - +1.1 1,676,288 - -1.4 1,676,288 - -0.7 1,676,311 - -0.8 1,676,311 - +4.1 1,676,371 + +3.2 1,676,374 + -0.7 1,676,374 + -1.1 1,676,374 + -4.3 1,676,375 - +1.2 1,676,380 + +1.1 1,676,381 - -0.6 1,676,387 + +3.1 1,676,476 + +1.0 1,676,480 - +3.5 1,676,489 + +0.1 1,676,490 - +0.1 1,676,498 + -1.7 1,676,498 + -0.9 1,676,499 - -1.9 1,676,536 + -2.7 1,676,536 + -0.3 1,676,536 + -1.0 1,676,536 + +3.4 1,676,536 + -1.4 1,676,536 + -0.1 1,676,536 + +3.8 1,676,536 + -1.9 1,676,537 - +0.1 1,676,537 - +1.6 1,676,537 - -1.6 1,676,537 - +1.6 1,676,538 + +0.2 1,676,684 + +3.4 1,676,693 + -0.5 1,676,693 + -1.6 1,676,694 - +0.1 1,676,694 - +4.1 1,676,694 - -0.9 1,676,705 + +0.6 1,676,751 + -2.7 1,676,751 + -4.6 1,676,751 + +3.4 1,676,751 + +2.6 1,676,751 + +3.1 1,676,751 + -1.4 1,676,751 + +1.1 1,676,751 + -0.4 1,676,752 - +3.5 1,676,752 - +1.1 1,676,752 - +0.1 1,676,752 - -1.9 1,676,752 - +0.1 1,676,752 - -3.7 1,676,752 - -1.9 1,676,752 - -0.7 1,676,752 - +2.1 1,676,752 - +0.6 1,676,752 - -2.3 1,676,752 - +2.9 1,676,752 - +0.1 1,676,771 + -1.4 1,676,771 + +0.3 1,676,771 + -1.7 1,676,771 + -3.9 1,676,771 + -3.0 1,676,771 + +3.4 1,676,771 + +0.7 1,676,771 + -1.0 1,676,771 + +3.2 1,676,771 + -3.0 1,676,771 + +3.2 1,676,771 + +3.4 1,676,772 - -0.0 1,676,772 - -3.0 1,676,772 - -1.8 1,676,772 - -1.5 1,676,851 + +0.1 1,676,851 + +2.1 1,676,869 - -1.4 1,676,937 + -0.6 1,676,937 + +0.1 1,676,938 - -1.5 1,676,954 + -1.6 1,676,954 + +1.6 1,676,955 - -1.0 1,676,979 - +0.1 1,676,979 - -1.5 1,677,042 + +2.9 1,677,135 - +2.6 1,677,135 - -2.8 1,677,135 - -1.4 1,677,154 + +2.1 1,677,247 + +0.3 1,677,247 + -1.3 1,677,247 + -1.7 1,677,248 - -1.8 1,677,261 + +2.6 1,677,262 - +0.1 1,677,286 - +0.9 1,677,286 - -3.8 1,677,288 + +0.1 1,677,288 + +2.6 1,677,289 - -0.6 1,677,289 - +0.1 1,677,289 - -0.3 1,677,289 - -2.1 1,677,317 - Psyr_1489 0.11 -2.1 1,677,317 - Psyr_1489 0.11 +2.6 1,677,317 - Psyr_1489 0.11 -1.5 1,677,344 - Psyr_1489 0.20 +1.6 1,677,369 + Psyr_1489 0.29 +1.1 1,677,450 + Psyr_1489 0.58 +2.4 1,677,450 + Psyr_1489 0.58 -0.5 1,677,451 - Psyr_1489 0.59 -0.5 1,677,480 + Psyr_1489 0.69 -4.4 1,677,481 - Psyr_1489 0.70 +2.1 1,677,481 - Psyr_1489 0.70 -2.1 1,677,481 - Psyr_1489 0.70 +3.9 1,677,481 - Psyr_1489 0.70 +0.1 1,677,571 + +2.1 1,677,571 + -1.5 1,677,572 - -2.3 1,677,572 - +4.0 1,677,572 - +3.9 1,677,619 + -2.4 1,677,619 + +4.2 1,677,619 + +0.5 1,677,620 - -3.8 1,677,620 - -3.8 1,677,620 - +2.1 1,677,620 - +3.8 1,677,620 - -0.9 1,677,644 - +3.9 1,677,672 + -0.5 1,678,074 + -0.5 1,678,075 - +0.3 1,678,075 - -0.5 1,678,075 - -0.2 1,678,075 - +2.1 1,678,116 + -1.6 1,678,116 + +3.9 1,678,116 + -3.4 1,678,116 + -0.5 1,678,116 + +2.9 1,678,116 + -0.9 1,678,116 + +0.1 1,678,117 - +4.4 1,678,117 - +2.4 1,678,117 - +2.1 1,678,117 - +2.4 1,678,117 - -1.6 1,678,117 - -0.1 1,678,119 - +0.1 1,678,119 - +4.6 1,678,143 + +2.7 1,678,143 + -0.9 1,678,143 + +0.2 1,678,143 + -2.3 1,678,183 + -0.1 1,678,183 + -1.5 1,678,183 + -1.6 1,678,183 + +1.6 1,678,183 + +4.1 1,678,184 - +4.6 1,678,184 - -1.3 1,678,184 - +3.2 1,678,184 - +3.1 1,678,184 - +0.4 1,678,184 - -2.4 1,678,191 + -5.1 1,678,192 - -1.0 1,678,192 - -0.1 1,678,196 + +1.1 1,678,196 + +0.6 1,678,197 - +1.6 1,678,197 - -0.4 1,678,231 - +2.4 1,678,404 + Psyr_1491 0.13 -1.7 1,678,404 + Psyr_1491 0.13 -0.9 1,678,404 + Psyr_1491 0.13 -1.6 1,678,404 + Psyr_1491 0.13 -2.0 1,678,404 + Psyr_1491 0.13 +4.1 1,678,404 + Psyr_1491 0.13 -3.4 1,678,405 - Psyr_1491 0.13 -1.4 1,678,405 - Psyr_1491 0.13 -2.5 1,678,405 - Psyr_1491 0.13 +0.5 1,678,405 - Psyr_1491 0.13 -0.4 1,678,405 - Psyr_1491 0.13 +3.4 1,678,405 - Psyr_1491 0.13 +1.7 1,678,405 - Psyr_1491 0.13 -1.8 1,678,405 - Psyr_1491 0.13 +3.5 1,678,405 - Psyr_1491 0.13 +3.7 1,678,405 - Psyr_1491 0.13 +2.7 1,678,405 - Psyr_1491 0.13 +3.2 1,678,405 - Psyr_1491 0.13 -1.4 1,678,405 - Psyr_1491 0.13 -1.8
Or see this region's nucleotide sequence