Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1466

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1464 and Psyr_1465 are separated by 29 nucleotidesPsyr_1465 and Psyr_1466 are separated by 66 nucleotidesPsyr_1466 and Psyr_1467 are separated by 88 nucleotidesPsyr_1467 and Psyr_1468 are separated by 95 nucleotides Psyr_1464: Psyr_1464 - hypothetical protein, at 1,652,193 to 1,653,644 _1464 Psyr_1465: Psyr_1465 - conserved hypothetical protein, at 1,653,674 to 1,654,273 _1465 Psyr_1466: Psyr_1466 - hypothetical protein, at 1,654,340 to 1,654,864 _1466 Psyr_1467: Psyr_1467 - conserved hypothetical protein, at 1,654,953 to 1,655,564 _1467 Psyr_1468: Psyr_1468 - hypothetical protein, at 1,655,660 to 1,656,022 _1468 Position (kb) 1654 1655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1653.442 kb on + strand, within Psyr_1464at 1653.442 kb on + strand, within Psyr_1464at 1653.442 kb on + strand, within Psyr_1464at 1653.443 kb on - strand, within Psyr_1464at 1653.443 kb on - strand, within Psyr_1464at 1653.443 kb on - strand, within Psyr_1464at 1653.443 kb on - strand, within Psyr_1464at 1653.443 kb on - strand, within Psyr_1464at 1653.443 kb on - strand, within Psyr_1464at 1653.595 kb on + strandat 1653.596 kb on - strandat 1653.675 kb on + strandat 1653.675 kb on + strandat 1653.675 kb on + strandat 1653.675 kb on + strandat 1653.675 kb on + strandat 1653.782 kb on - strand, within Psyr_1465at 1653.782 kb on - strand, within Psyr_1465at 1653.871 kb on + strand, within Psyr_1465at 1653.871 kb on + strand, within Psyr_1465at 1653.871 kb on + strand, within Psyr_1465at 1653.871 kb on + strand, within Psyr_1465at 1653.871 kb on + strand, within Psyr_1465at 1653.871 kb on + strand, within Psyr_1465at 1653.871 kb on + strand, within Psyr_1465at 1653.872 kb on - strand, within Psyr_1465at 1653.872 kb on - strand, within Psyr_1465at 1653.872 kb on - strand, within Psyr_1465at 1653.872 kb on - strand, within Psyr_1465at 1653.875 kb on + strand, within Psyr_1465at 1653.875 kb on + strand, within Psyr_1465at 1653.875 kb on + strand, within Psyr_1465at 1653.875 kb on + strand, within Psyr_1465at 1653.875 kb on + strand, within Psyr_1465at 1653.875 kb on + strand, within Psyr_1465at 1653.876 kb on - strand, within Psyr_1465at 1653.895 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.983 kb on + strand, within Psyr_1465at 1653.984 kb on - strand, within Psyr_1465at 1653.984 kb on - strand, within Psyr_1465at 1653.984 kb on - strand, within Psyr_1465at 1653.984 kb on - strand, within Psyr_1465at 1653.984 kb on - strand, within Psyr_1465at 1653.984 kb on - strand, within Psyr_1465at 1654.184 kb on + strand, within Psyr_1465at 1654.185 kb on - strandat 1654.185 kb on - strand, within Psyr_1465at 1654.185 kb on - strand, within Psyr_1465at 1654.224 kb on + strandat 1654.224 kb on + strandat 1654.224 kb on + strandat 1654.225 kb on - strandat 1654.225 kb on - strandat 1654.225 kb on - strandat 1654.225 kb on - strandat 1654.225 kb on - strandat 1654.274 kb on + strandat 1654.274 kb on + strandat 1654.274 kb on + strandat 1654.274 kb on + strandat 1654.275 kb on - strandat 1654.396 kb on - strand, within Psyr_1466at 1654.438 kb on - strand, within Psyr_1466at 1654.472 kb on + strand, within Psyr_1466at 1654.473 kb on - strand, within Psyr_1466at 1654.473 kb on - strand, within Psyr_1466at 1654.485 kb on + strand, within Psyr_1466at 1654.486 kb on - strand, within Psyr_1466at 1654.486 kb on - strand, within Psyr_1466at 1654.572 kb on + strand, within Psyr_1466at 1654.572 kb on + strand, within Psyr_1466at 1654.572 kb on + strand, within Psyr_1466at 1654.572 kb on + strand, within Psyr_1466at 1654.572 kb on + strand, within Psyr_1466at 1654.572 kb on + strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.573 kb on - strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.574 kb on + strand, within Psyr_1466at 1654.575 kb on - strand, within Psyr_1466at 1654.575 kb on - strand, within Psyr_1466at 1654.575 kb on - strand, within Psyr_1466at 1654.575 kb on - strand, within Psyr_1466at 1654.575 kb on - strand, within Psyr_1466at 1654.575 kb on - strand, within Psyr_1466at 1654.580 kb on + strand, within Psyr_1466at 1654.580 kb on + strand, within Psyr_1466at 1654.660 kb on - strand, within Psyr_1466at 1654.685 kb on + strand, within Psyr_1466at 1654.685 kb on + strand, within Psyr_1466at 1654.736 kb on + strand, within Psyr_1466at 1654.736 kb on + strand, within Psyr_1466at 1654.736 kb on + strand, within Psyr_1466at 1654.736 kb on + strand, within Psyr_1466at 1654.736 kb on + strand, within Psyr_1466at 1654.737 kb on - strand, within Psyr_1466at 1654.737 kb on - strand, within Psyr_1466at 1654.843 kb on + strandat 1654.843 kb on + strandat 1654.844 kb on - strandat 1654.844 kb on - strandat 1654.847 kb on + strandat 1654.881 kb on + strandat 1654.882 kb on - strandat 1654.884 kb on + strandat 1654.884 kb on + strandat 1654.885 kb on - strandat 1654.885 kb on - strandat 1654.921 kb on + strandat 1654.921 kb on + strandat 1654.921 kb on + strandat 1654.921 kb on + strandat 1654.921 kb on + strandat 1654.922 kb on - strandat 1654.922 kb on - strandat 1654.922 kb on - strandat 1654.922 kb on - strandat 1654.922 kb on - strandat 1654.922 kb on - strandat 1654.928 kb on - strandat 1654.957 kb on + strandat 1654.957 kb on + strandat 1654.957 kb on + strandat 1654.957 kb on + strandat 1655.049 kb on + strand, within Psyr_1467at 1655.049 kb on + strand, within Psyr_1467at 1655.049 kb on + strand, within Psyr_1467at 1655.050 kb on - strand, within Psyr_1467at 1655.383 kb on + strand, within Psyr_1467at 1655.384 kb on - strand, within Psyr_1467at 1655.387 kb on - strand, within Psyr_1467at 1655.387 kb on - strand, within Psyr_1467at 1655.387 kb on - strand, within Psyr_1467at 1655.387 kb on - strand, within Psyr_1467at 1655.441 kb on - strand, within Psyr_1467at 1655.545 kb on + strandat 1655.568 kb on + strandat 1655.568 kb on + strandat 1655.569 kb on - strandat 1655.569 kb on - strandat 1655.593 kb on + strandat 1655.593 kb on + strandat 1655.597 kb on - strandat 1655.652 kb on + strandat 1655.671 kb on - strandat 1655.698 kb on + strand, within Psyr_1468at 1655.698 kb on + strand, within Psyr_1468at 1655.698 kb on + strand, within Psyr_1468at 1655.698 kb on + strand, within Psyr_1468at 1655.698 kb on + strand, within Psyr_1468at 1655.699 kb on - strand, within Psyr_1468at 1655.699 kb on - strand, within Psyr_1468at 1655.707 kb on - strand, within Psyr_1468at 1655.720 kb on + strand, within Psyr_1468at 1655.720 kb on + strand, within Psyr_1468at 1655.720 kb on + strand, within Psyr_1468at 1655.721 kb on - strand, within Psyr_1468at 1655.745 kb on - strand, within Psyr_1468at 1655.793 kb on + strand, within Psyr_1468at 1655.793 kb on + strand, within Psyr_1468at 1655.794 kb on - strand, within Psyr_1468at 1655.807 kb on + strand, within Psyr_1468at 1655.808 kb on - strand, within Psyr_1468

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,653,442 + Psyr_1464 0.86 +0.4
1,653,442 + Psyr_1464 0.86 -2.5
1,653,442 + Psyr_1464 0.86 +0.2
1,653,443 - Psyr_1464 0.86 +0.4
1,653,443 - Psyr_1464 0.86 +0.3
1,653,443 - Psyr_1464 0.86 +3.5
1,653,443 - Psyr_1464 0.86 -0.2
1,653,443 - Psyr_1464 0.86 -2.7
1,653,443 - Psyr_1464 0.86 +2.4
1,653,595 + -0.4
1,653,596 - +1.4
1,653,675 + +0.1
1,653,675 + -0.4
1,653,675 + -0.5
1,653,675 + +0.9
1,653,675 + +1.0
1,653,782 - Psyr_1465 0.18 +3.4
1,653,782 - Psyr_1465 0.18 -2.0
1,653,871 + Psyr_1465 0.33 -3.3
1,653,871 + Psyr_1465 0.33 -1.1
1,653,871 + Psyr_1465 0.33 -1.1
1,653,871 + Psyr_1465 0.33 +2.1
1,653,871 + Psyr_1465 0.33 -0.5
1,653,871 + Psyr_1465 0.33 +4.1
1,653,871 + Psyr_1465 0.33 +0.8
1,653,872 - Psyr_1465 0.33 -3.0
1,653,872 - Psyr_1465 0.33 +0.1
1,653,872 - Psyr_1465 0.33 +1.1
1,653,872 - Psyr_1465 0.33 +3.1
1,653,875 + Psyr_1465 0.34 +1.1
1,653,875 + Psyr_1465 0.34 -3.1
1,653,875 + Psyr_1465 0.34 +3.6
1,653,875 + Psyr_1465 0.34 -0.5
1,653,875 + Psyr_1465 0.34 +3.5
1,653,875 + Psyr_1465 0.34 +2.9
1,653,876 - Psyr_1465 0.34 +2.6
1,653,895 + Psyr_1465 0.37 +3.4
1,653,983 + Psyr_1465 0.52 +2.6
1,653,983 + Psyr_1465 0.52 +0.4
1,653,983 + Psyr_1465 0.52 +1.1
1,653,983 + Psyr_1465 0.52 -0.4
1,653,983 + Psyr_1465 0.52 -1.5
1,653,983 + Psyr_1465 0.52 -1.5
1,653,983 + Psyr_1465 0.52 +0.8
1,653,983 + Psyr_1465 0.52 -0.9
1,653,984 - Psyr_1465 0.52 +4.1
1,653,984 - Psyr_1465 0.52 +2.1
1,653,984 - Psyr_1465 0.52 -0.1
1,653,984 - Psyr_1465 0.52 +2.4
1,653,984 - Psyr_1465 0.52 +1.3
1,653,984 - Psyr_1465 0.52 +0.1
1,654,184 + Psyr_1465 0.85 -1.7
1,654,185 - -4.0
1,654,185 - Psyr_1465 0.85 -3.1
1,654,185 - Psyr_1465 0.85 +2.1
1,654,224 + -1.5
1,654,224 + -1.9
1,654,224 + -1.0
1,654,225 - -3.0
1,654,225 - +0.9
1,654,225 - -1.3
1,654,225 - +2.1
1,654,225 - +0.1
1,654,274 + -2.5
1,654,274 + -0.8
1,654,274 + +0.1
1,654,274 + -0.7
1,654,275 - -0.1
1,654,396 - Psyr_1466 0.11 -3.1
1,654,438 - Psyr_1466 0.19 +1.1
1,654,472 + Psyr_1466 0.25 +0.5
1,654,473 - Psyr_1466 0.25 -1.7
1,654,473 - Psyr_1466 0.25 -2.2
1,654,485 + Psyr_1466 0.28 -1.5
1,654,486 - Psyr_1466 0.28 +0.3
1,654,486 - Psyr_1466 0.28 +0.1
1,654,572 + Psyr_1466 0.44 +2.1
1,654,572 + Psyr_1466 0.44 -3.2
1,654,572 + Psyr_1466 0.44 -1.5
1,654,572 + Psyr_1466 0.44 +2.4
1,654,572 + Psyr_1466 0.44 +1.1
1,654,572 + Psyr_1466 0.44 +0.1
1,654,573 - Psyr_1466 0.44 +2.1
1,654,573 - Psyr_1466 0.44 +0.1
1,654,573 - Psyr_1466 0.44 -0.9
1,654,573 - Psyr_1466 0.44 +0.1
1,654,573 - Psyr_1466 0.44 +3.6
1,654,573 - Psyr_1466 0.44 -1.9
1,654,573 - Psyr_1466 0.44 -1.1
1,654,573 - Psyr_1466 0.44 +4.4
1,654,573 - Psyr_1466 0.44 -0.2
1,654,573 - Psyr_1466 0.44 -1.1
1,654,573 - Psyr_1466 0.44 +1.6
1,654,574 + Psyr_1466 0.45 -1.1
1,654,574 + Psyr_1466 0.45 +0.5
1,654,574 + Psyr_1466 0.45 +3.5
1,654,574 + Psyr_1466 0.45 -2.8
1,654,574 + Psyr_1466 0.45 +3.1
1,654,574 + Psyr_1466 0.45 -0.3
1,654,574 + Psyr_1466 0.45 +2.6
1,654,574 + Psyr_1466 0.45 +1.6
1,654,574 + Psyr_1466 0.45 -2.4
1,654,575 - Psyr_1466 0.45 -0.9
1,654,575 - Psyr_1466 0.45 +2.9
1,654,575 - Psyr_1466 0.45 +2.1
1,654,575 - Psyr_1466 0.45 +4.3
1,654,575 - Psyr_1466 0.45 -1.3
1,654,575 - Psyr_1466 0.45 +0.1
1,654,580 + Psyr_1466 0.46 +3.5
1,654,580 + Psyr_1466 0.46 -0.5
1,654,660 - Psyr_1466 0.61 -4.1
1,654,685 + Psyr_1466 0.66 -1.4
1,654,685 + Psyr_1466 0.66 +0.6
1,654,736 + Psyr_1466 0.75 -0.1
1,654,736 + Psyr_1466 0.75 +2.4
1,654,736 + Psyr_1466 0.75 -1.5
1,654,736 + Psyr_1466 0.75 +1.5
1,654,736 + Psyr_1466 0.75 -1.4
1,654,737 - Psyr_1466 0.76 +1.6
1,654,737 - Psyr_1466 0.76 -2.6
1,654,843 + +1.3
1,654,843 + -0.5
1,654,844 - -1.3
1,654,844 - -1.2
1,654,847 + +0.1
1,654,881 + +3.8
1,654,882 - +2.6
1,654,884 + -0.2
1,654,884 + +3.5
1,654,885 - -0.6
1,654,885 - -0.9
1,654,921 + -0.7
1,654,921 + +1.6
1,654,921 + -4.0
1,654,921 + +2.1
1,654,921 + +2.9
1,654,922 - -0.4
1,654,922 - -0.5
1,654,922 - +2.6
1,654,922 - +0.1
1,654,922 - -1.7
1,654,922 - -0.2
1,654,928 - -0.8
1,654,957 + -1.7
1,654,957 + +0.1
1,654,957 + -0.4
1,654,957 + -1.3
1,655,049 + Psyr_1467 0.16 +2.9
1,655,049 + Psyr_1467 0.16 +2.6
1,655,049 + Psyr_1467 0.16 +0.4
1,655,050 - Psyr_1467 0.16 +2.9
1,655,383 + Psyr_1467 0.70 +0.5
1,655,384 - Psyr_1467 0.70 -0.8
1,655,387 - Psyr_1467 0.71 -0.2
1,655,387 - Psyr_1467 0.71 +1.0
1,655,387 - Psyr_1467 0.71 +2.4
1,655,387 - Psyr_1467 0.71 +2.6
1,655,441 - Psyr_1467 0.80 -1.1
1,655,545 + -0.9
1,655,568 + +0.2
1,655,568 + -1.5
1,655,569 - -2.2
1,655,569 - -1.3
1,655,593 + -0.6
1,655,593 + +0.3
1,655,597 - +0.2
1,655,652 + +2.6
1,655,671 - -0.2
1,655,698 + Psyr_1468 0.10 +3.5
1,655,698 + Psyr_1468 0.10 -2.1
1,655,698 + Psyr_1468 0.10 -1.1
1,655,698 + Psyr_1468 0.10 +0.3
1,655,698 + Psyr_1468 0.10 -1.6
1,655,699 - Psyr_1468 0.11 -2.7
1,655,699 - Psyr_1468 0.11 +0.9
1,655,707 - Psyr_1468 0.13 +0.2
1,655,720 + Psyr_1468 0.17 +0.1
1,655,720 + Psyr_1468 0.17 +2.6
1,655,720 + Psyr_1468 0.17 -0.7
1,655,721 - Psyr_1468 0.17 -1.3
1,655,745 - Psyr_1468 0.23 +2.1
1,655,793 + Psyr_1468 0.37 -0.0
1,655,793 + Psyr_1468 0.37 +2.4
1,655,794 - Psyr_1468 0.37 +0.1
1,655,807 + Psyr_1468 0.40 +2.1
1,655,808 - Psyr_1468 0.41 -3.3

Or see this region's nucleotide sequence