Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1464 and Psyr_1465 are separated by 29 nucleotides Psyr_1465 and Psyr_1466 are separated by 66 nucleotides Psyr_1466 and Psyr_1467 are separated by 88 nucleotides
Psyr_1464: Psyr_1464 - hypothetical protein, at 1,652,193 to 1,653,644
_1464
Psyr_1465: Psyr_1465 - conserved hypothetical protein, at 1,653,674 to 1,654,273
_1465
Psyr_1466: Psyr_1466 - hypothetical protein, at 1,654,340 to 1,654,864
_1466
Psyr_1467: Psyr_1467 - conserved hypothetical protein, at 1,654,953 to 1,655,564
_1467
Position (kb) 1653
1654
1655 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.683 kb on + strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.684 kb on - strand, within Psyr_1464 at 1652.686 kb on - strand, within Psyr_1464 at 1652.730 kb on + strand, within Psyr_1464 at 1652.730 kb on + strand, within Psyr_1464 at 1652.730 kb on + strand, within Psyr_1464 at 1652.731 kb on - strand, within Psyr_1464 at 1652.731 kb on - strand, within Psyr_1464 at 1652.739 kb on + strand, within Psyr_1464 at 1652.740 kb on - strand, within Psyr_1464 at 1652.740 kb on - strand, within Psyr_1464 at 1652.847 kb on + strand, within Psyr_1464 at 1652.905 kb on + strand, within Psyr_1464 at 1652.906 kb on - strand, within Psyr_1464 at 1652.944 kb on + strand, within Psyr_1464 at 1652.944 kb on + strand, within Psyr_1464 at 1652.944 kb on + strand, within Psyr_1464 at 1652.945 kb on - strand, within Psyr_1464 at 1652.945 kb on - strand, within Psyr_1464 at 1652.945 kb on - strand, within Psyr_1464 at 1652.945 kb on - strand, within Psyr_1464 at 1653.013 kb on + strand, within Psyr_1464 at 1653.013 kb on + strand, within Psyr_1464 at 1653.013 kb on + strand, within Psyr_1464 at 1653.014 kb on - strand, within Psyr_1464 at 1653.014 kb on - strand, within Psyr_1464 at 1653.064 kb on - strand, within Psyr_1464 at 1653.175 kb on + strand, within Psyr_1464 at 1653.175 kb on + strand, within Psyr_1464 at 1653.175 kb on + strand, within Psyr_1464 at 1653.176 kb on - strand, within Psyr_1464 at 1653.176 kb on - strand, within Psyr_1464 at 1653.176 kb on - strand, within Psyr_1464 at 1653.176 kb on - strand, within Psyr_1464 at 1653.192 kb on + strand, within Psyr_1464 at 1653.192 kb on + strand, within Psyr_1464 at 1653.192 kb on + strand, within Psyr_1464 at 1653.192 kb on + strand, within Psyr_1464 at 1653.193 kb on - strand, within Psyr_1464 at 1653.193 kb on - strand, within Psyr_1464 at 1653.193 kb on - strand, within Psyr_1464 at 1653.193 kb on - strand, within Psyr_1464 at 1653.193 kb on - strand, within Psyr_1464 at 1653.235 kb on + strand, within Psyr_1464 at 1653.275 kb on - strand, within Psyr_1464 at 1653.313 kb on + strand, within Psyr_1464 at 1653.442 kb on + strand, within Psyr_1464 at 1653.442 kb on + strand, within Psyr_1464 at 1653.442 kb on + strand, within Psyr_1464 at 1653.443 kb on - strand, within Psyr_1464 at 1653.443 kb on - strand, within Psyr_1464 at 1653.443 kb on - strand, within Psyr_1464 at 1653.443 kb on - strand, within Psyr_1464 at 1653.443 kb on - strand, within Psyr_1464 at 1653.443 kb on - strand, within Psyr_1464 at 1653.595 kb on + strand at 1653.596 kb on - strand at 1653.675 kb on + strand at 1653.675 kb on + strand at 1653.675 kb on + strand at 1653.675 kb on + strand at 1653.675 kb on + strand at 1653.782 kb on - strand, within Psyr_1465 at 1653.782 kb on - strand, within Psyr_1465 at 1653.871 kb on + strand, within Psyr_1465 at 1653.871 kb on + strand, within Psyr_1465 at 1653.871 kb on + strand, within Psyr_1465 at 1653.871 kb on + strand, within Psyr_1465 at 1653.871 kb on + strand, within Psyr_1465 at 1653.871 kb on + strand, within Psyr_1465 at 1653.871 kb on + strand, within Psyr_1465 at 1653.872 kb on - strand, within Psyr_1465 at 1653.872 kb on - strand, within Psyr_1465 at 1653.872 kb on - strand, within Psyr_1465 at 1653.872 kb on - strand, within Psyr_1465 at 1653.875 kb on + strand, within Psyr_1465 at 1653.875 kb on + strand, within Psyr_1465 at 1653.875 kb on + strand, within Psyr_1465 at 1653.875 kb on + strand, within Psyr_1465 at 1653.875 kb on + strand, within Psyr_1465 at 1653.875 kb on + strand, within Psyr_1465 at 1653.876 kb on - strand, within Psyr_1465 at 1653.895 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.983 kb on + strand, within Psyr_1465 at 1653.984 kb on - strand, within Psyr_1465 at 1653.984 kb on - strand, within Psyr_1465 at 1653.984 kb on - strand, within Psyr_1465 at 1653.984 kb on - strand, within Psyr_1465 at 1653.984 kb on - strand, within Psyr_1465 at 1653.984 kb on - strand, within Psyr_1465 at 1654.184 kb on + strand, within Psyr_1465 at 1654.185 kb on - strand at 1654.185 kb on - strand, within Psyr_1465 at 1654.185 kb on - strand, within Psyr_1465 at 1654.224 kb on + strand at 1654.224 kb on + strand at 1654.224 kb on + strand at 1654.225 kb on - strand at 1654.225 kb on - strand at 1654.225 kb on - strand at 1654.225 kb on - strand at 1654.225 kb on - strand at 1654.274 kb on + strand at 1654.274 kb on + strand at 1654.274 kb on + strand at 1654.274 kb on + strand at 1654.275 kb on - strand at 1654.396 kb on - strand, within Psyr_1466 at 1654.438 kb on - strand, within Psyr_1466 at 1654.472 kb on + strand, within Psyr_1466 at 1654.473 kb on - strand, within Psyr_1466 at 1654.473 kb on - strand, within Psyr_1466 at 1654.485 kb on + strand, within Psyr_1466 at 1654.486 kb on - strand, within Psyr_1466 at 1654.486 kb on - strand, within Psyr_1466 at 1654.572 kb on + strand, within Psyr_1466 at 1654.572 kb on + strand, within Psyr_1466 at 1654.572 kb on + strand, within Psyr_1466 at 1654.572 kb on + strand, within Psyr_1466 at 1654.572 kb on + strand, within Psyr_1466 at 1654.572 kb on + strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.573 kb on - strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.574 kb on + strand, within Psyr_1466 at 1654.575 kb on - strand, within Psyr_1466 at 1654.575 kb on - strand, within Psyr_1466 at 1654.575 kb on - strand, within Psyr_1466 at 1654.575 kb on - strand, within Psyr_1466 at 1654.575 kb on - strand, within Psyr_1466 at 1654.575 kb on - strand, within Psyr_1466 at 1654.580 kb on + strand, within Psyr_1466 at 1654.580 kb on + strand, within Psyr_1466 at 1654.660 kb on - strand, within Psyr_1466 at 1654.685 kb on + strand, within Psyr_1466 at 1654.685 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.737 kb on - strand, within Psyr_1466 at 1654.737 kb on - strand, within Psyr_1466 at 1654.843 kb on + strand at 1654.843 kb on + strand at 1654.844 kb on - strand at 1654.844 kb on - strand at 1654.847 kb on + strand at 1654.881 kb on + strand at 1654.882 kb on - strand at 1654.884 kb on + strand at 1654.884 kb on + strand at 1654.885 kb on - strand at 1654.885 kb on - strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.928 kb on - strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1655.049 kb on + strand, within Psyr_1467 at 1655.049 kb on + strand, within Psyr_1467 at 1655.049 kb on + strand, within Psyr_1467 at 1655.050 kb on - strand, within Psyr_1467
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,652,683 + Psyr_1464 0.34 -3.6 1,652,683 + Psyr_1464 0.34 -2.4 1,652,683 + Psyr_1464 0.34 -0.2 1,652,683 + Psyr_1464 0.34 +0.6 1,652,683 + Psyr_1464 0.34 +1.6 1,652,683 + Psyr_1464 0.34 +0.3 1,652,683 + Psyr_1464 0.34 -1.5 1,652,683 + Psyr_1464 0.34 -0.6 1,652,683 + Psyr_1464 0.34 +0.7 1,652,683 + Psyr_1464 0.34 +1.6 1,652,683 + Psyr_1464 0.34 +0.5 1,652,683 + Psyr_1464 0.34 +2.4 1,652,684 - Psyr_1464 0.34 -1.2 1,652,684 - Psyr_1464 0.34 +1.6 1,652,684 - Psyr_1464 0.34 +3.2 1,652,684 - Psyr_1464 0.34 -2.3 1,652,684 - Psyr_1464 0.34 +2.9 1,652,684 - Psyr_1464 0.34 +2.4 1,652,684 - Psyr_1464 0.34 +2.1 1,652,684 - Psyr_1464 0.34 -0.2 1,652,684 - Psyr_1464 0.34 +0.2 1,652,684 - Psyr_1464 0.34 -0.5 1,652,684 - Psyr_1464 0.34 -1.1 1,652,684 - Psyr_1464 0.34 -2.0 1,652,686 - Psyr_1464 0.34 +2.4 1,652,730 + Psyr_1464 0.37 -3.1 1,652,730 + Psyr_1464 0.37 +0.5 1,652,730 + Psyr_1464 0.37 -3.5 1,652,731 - Psyr_1464 0.37 +3.1 1,652,731 - Psyr_1464 0.37 -0.6 1,652,739 + Psyr_1464 0.38 -1.5 1,652,740 - Psyr_1464 0.38 +0.1 1,652,740 - Psyr_1464 0.38 -1.2 1,652,847 + Psyr_1464 0.45 -3.4 1,652,905 + Psyr_1464 0.49 +1.1 1,652,906 - Psyr_1464 0.49 -0.5 1,652,944 + Psyr_1464 0.52 -0.3 1,652,944 + Psyr_1464 0.52 +0.1 1,652,944 + Psyr_1464 0.52 -3.6 1,652,945 - Psyr_1464 0.52 -0.2 1,652,945 - Psyr_1464 0.52 +3.4 1,652,945 - Psyr_1464 0.52 -0.9 1,652,945 - Psyr_1464 0.52 -1.2 1,653,013 + Psyr_1464 0.56 +2.6 1,653,013 + Psyr_1464 0.56 +0.1 1,653,013 + Psyr_1464 0.56 +4.1 1,653,014 - Psyr_1464 0.57 +3.6 1,653,014 - Psyr_1464 0.57 +0.1 1,653,064 - Psyr_1464 0.60 -1.9 1,653,175 + Psyr_1464 0.68 +0.1 1,653,175 + Psyr_1464 0.68 +1.1 1,653,175 + Psyr_1464 0.68 +3.4 1,653,176 - Psyr_1464 0.68 -1.8 1,653,176 - Psyr_1464 0.68 -0.5 1,653,176 - Psyr_1464 0.68 +0.2 1,653,176 - Psyr_1464 0.68 -2.4 1,653,192 + Psyr_1464 0.69 +3.1 1,653,192 + Psyr_1464 0.69 +3.4 1,653,192 + Psyr_1464 0.69 +2.1 1,653,192 + Psyr_1464 0.69 +2.9 1,653,193 - Psyr_1464 0.69 +1.3 1,653,193 - Psyr_1464 0.69 +3.4 1,653,193 - Psyr_1464 0.69 -4.2 1,653,193 - Psyr_1464 0.69 +4.3 1,653,193 - Psyr_1464 0.69 -1.4 1,653,235 + Psyr_1464 0.72 +2.9 1,653,275 - Psyr_1464 0.75 -1.1 1,653,313 + Psyr_1464 0.77 +1.4 1,653,442 + Psyr_1464 0.86 +0.4 1,653,442 + Psyr_1464 0.86 -2.5 1,653,442 + Psyr_1464 0.86 +0.2 1,653,443 - Psyr_1464 0.86 +0.4 1,653,443 - Psyr_1464 0.86 +0.3 1,653,443 - Psyr_1464 0.86 +3.5 1,653,443 - Psyr_1464 0.86 -0.2 1,653,443 - Psyr_1464 0.86 -2.7 1,653,443 - Psyr_1464 0.86 +2.4 1,653,595 + -0.4 1,653,596 - +1.4 1,653,675 + +0.1 1,653,675 + -0.4 1,653,675 + -0.5 1,653,675 + +0.9 1,653,675 + +1.0 1,653,782 - Psyr_1465 0.18 +3.4 1,653,782 - Psyr_1465 0.18 -2.0 1,653,871 + Psyr_1465 0.33 -3.3 1,653,871 + Psyr_1465 0.33 -1.1 1,653,871 + Psyr_1465 0.33 -1.1 1,653,871 + Psyr_1465 0.33 +2.1 1,653,871 + Psyr_1465 0.33 -0.5 1,653,871 + Psyr_1465 0.33 +4.1 1,653,871 + Psyr_1465 0.33 +0.8 1,653,872 - Psyr_1465 0.33 -3.0 1,653,872 - Psyr_1465 0.33 +0.1 1,653,872 - Psyr_1465 0.33 +1.1 1,653,872 - Psyr_1465 0.33 +3.1 1,653,875 + Psyr_1465 0.34 +1.1 1,653,875 + Psyr_1465 0.34 -3.1 1,653,875 + Psyr_1465 0.34 +3.6 1,653,875 + Psyr_1465 0.34 -0.5 1,653,875 + Psyr_1465 0.34 +3.5 1,653,875 + Psyr_1465 0.34 +2.9 1,653,876 - Psyr_1465 0.34 +2.6 1,653,895 + Psyr_1465 0.37 +3.4 1,653,983 + Psyr_1465 0.52 +2.6 1,653,983 + Psyr_1465 0.52 +0.4 1,653,983 + Psyr_1465 0.52 +1.1 1,653,983 + Psyr_1465 0.52 -0.4 1,653,983 + Psyr_1465 0.52 -1.5 1,653,983 + Psyr_1465 0.52 -1.5 1,653,983 + Psyr_1465 0.52 +0.8 1,653,983 + Psyr_1465 0.52 -0.9 1,653,984 - Psyr_1465 0.52 +4.1 1,653,984 - Psyr_1465 0.52 +2.1 1,653,984 - Psyr_1465 0.52 -0.1 1,653,984 - Psyr_1465 0.52 +2.4 1,653,984 - Psyr_1465 0.52 +1.3 1,653,984 - Psyr_1465 0.52 +0.1 1,654,184 + Psyr_1465 0.85 -1.7 1,654,185 - -4.0 1,654,185 - Psyr_1465 0.85 -3.1 1,654,185 - Psyr_1465 0.85 +2.1 1,654,224 + -1.5 1,654,224 + -1.9 1,654,224 + -1.0 1,654,225 - -3.0 1,654,225 - +0.9 1,654,225 - -1.3 1,654,225 - +2.1 1,654,225 - +0.1 1,654,274 + -2.5 1,654,274 + -0.8 1,654,274 + +0.1 1,654,274 + -0.7 1,654,275 - -0.1 1,654,396 - Psyr_1466 0.11 -3.1 1,654,438 - Psyr_1466 0.19 +1.1 1,654,472 + Psyr_1466 0.25 +0.5 1,654,473 - Psyr_1466 0.25 -1.7 1,654,473 - Psyr_1466 0.25 -2.2 1,654,485 + Psyr_1466 0.28 -1.5 1,654,486 - Psyr_1466 0.28 +0.3 1,654,486 - Psyr_1466 0.28 +0.1 1,654,572 + Psyr_1466 0.44 +2.1 1,654,572 + Psyr_1466 0.44 -3.2 1,654,572 + Psyr_1466 0.44 -1.5 1,654,572 + Psyr_1466 0.44 +2.4 1,654,572 + Psyr_1466 0.44 +1.1 1,654,572 + Psyr_1466 0.44 +0.1 1,654,573 - Psyr_1466 0.44 +2.1 1,654,573 - Psyr_1466 0.44 +0.1 1,654,573 - Psyr_1466 0.44 -0.9 1,654,573 - Psyr_1466 0.44 +0.1 1,654,573 - Psyr_1466 0.44 +3.6 1,654,573 - Psyr_1466 0.44 -1.9 1,654,573 - Psyr_1466 0.44 -1.1 1,654,573 - Psyr_1466 0.44 +4.4 1,654,573 - Psyr_1466 0.44 -0.2 1,654,573 - Psyr_1466 0.44 -1.1 1,654,573 - Psyr_1466 0.44 +1.6 1,654,574 + Psyr_1466 0.45 -1.1 1,654,574 + Psyr_1466 0.45 +0.5 1,654,574 + Psyr_1466 0.45 +3.5 1,654,574 + Psyr_1466 0.45 -2.8 1,654,574 + Psyr_1466 0.45 +3.1 1,654,574 + Psyr_1466 0.45 -0.3 1,654,574 + Psyr_1466 0.45 +2.6 1,654,574 + Psyr_1466 0.45 +1.6 1,654,574 + Psyr_1466 0.45 -2.4 1,654,575 - Psyr_1466 0.45 -0.9 1,654,575 - Psyr_1466 0.45 +2.9 1,654,575 - Psyr_1466 0.45 +2.1 1,654,575 - Psyr_1466 0.45 +4.3 1,654,575 - Psyr_1466 0.45 -1.3 1,654,575 - Psyr_1466 0.45 +0.1 1,654,580 + Psyr_1466 0.46 +3.5 1,654,580 + Psyr_1466 0.46 -0.5 1,654,660 - Psyr_1466 0.61 -4.1 1,654,685 + Psyr_1466 0.66 -1.4 1,654,685 + Psyr_1466 0.66 +0.6 1,654,736 + Psyr_1466 0.75 -0.1 1,654,736 + Psyr_1466 0.75 +2.4 1,654,736 + Psyr_1466 0.75 -1.5 1,654,736 + Psyr_1466 0.75 +1.5 1,654,736 + Psyr_1466 0.75 -1.4 1,654,737 - Psyr_1466 0.76 +1.6 1,654,737 - Psyr_1466 0.76 -2.6 1,654,843 + +1.3 1,654,843 + -0.5 1,654,844 - -1.3 1,654,844 - -1.2 1,654,847 + +0.1 1,654,881 + +3.8 1,654,882 - +2.6 1,654,884 + -0.2 1,654,884 + +3.5 1,654,885 - -0.6 1,654,885 - -0.9 1,654,921 + -0.7 1,654,921 + +1.6 1,654,921 + -4.0 1,654,921 + +2.1 1,654,921 + +2.9 1,654,922 - -0.4 1,654,922 - -0.5 1,654,922 - +2.6 1,654,922 - +0.1 1,654,922 - -1.7 1,654,922 - -0.2 1,654,928 - -0.8 1,654,957 + -1.7 1,654,957 + +0.1 1,654,957 + -0.4 1,654,957 + -1.3 1,655,049 + Psyr_1467 0.16 +2.9 1,655,049 + Psyr_1467 0.16 +2.6 1,655,049 + Psyr_1467 0.16 +0.4 1,655,050 - Psyr_1467 0.16 +2.9
Or see this region's nucleotide sequence