Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1448

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1446 and Psyr_1447 overlap by 4 nucleotidesPsyr_1447 and Psyr_1448 are separated by 15 nucleotidesPsyr_1448 and Psyr_1449 are separated by 19 nucleotidesPsyr_1449 and Psyr_1450 overlap by 4 nucleotidesPsyr_1450 and Psyr_1451 are separated by 79 nucleotides Psyr_1446: Psyr_1446 - conserved hypothetical protein, at 1,636,210 to 1,636,878 _1446 Psyr_1447: Psyr_1447 - conserved hypothetical protein, at 1,636,875 to 1,637,267 _1447 Psyr_1448: Psyr_1448 - conserved hypothetical protein, at 1,637,283 to 1,637,651 _1448 Psyr_1449: Psyr_1449 - hypothetical protein, at 1,637,671 to 1,637,910 _1449 Psyr_1450: Psyr_1450 - Plasmid conserved hypothetical protein, RAQPRD, at 1,637,907 to 1,638,269 _1450 Psyr_1451: Psyr_1451 - hypothetical protein, at 1,638,349 to 1,638,681 _1451 Position (kb) 1637 1638Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1636.284 kb on - strand, within Psyr_1446at 1636.284 kb on - strand, within Psyr_1446at 1636.284 kb on - strand, within Psyr_1446at 1636.284 kb on - strand, within Psyr_1446at 1636.332 kb on + strand, within Psyr_1446at 1636.332 kb on + strand, within Psyr_1446at 1636.332 kb on + strand, within Psyr_1446at 1636.332 kb on + strand, within Psyr_1446at 1636.332 kb on + strand, within Psyr_1446at 1636.332 kb on + strand, within Psyr_1446at 1636.332 kb on + strand, within Psyr_1446at 1636.333 kb on - strand, within Psyr_1446at 1636.333 kb on - strand, within Psyr_1446at 1636.333 kb on - strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.336 kb on + strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.337 kb on - strand, within Psyr_1446at 1636.391 kb on + strand, within Psyr_1446at 1636.392 kb on - strand, within Psyr_1446at 1636.392 kb on - strand, within Psyr_1446at 1636.392 kb on - strand, within Psyr_1446at 1636.434 kb on + strand, within Psyr_1446at 1636.516 kb on + strand, within Psyr_1446at 1636.516 kb on + strand, within Psyr_1446at 1636.517 kb on - strand, within Psyr_1446at 1636.517 kb on - strand, within Psyr_1446at 1636.517 kb on - strand, within Psyr_1446at 1636.559 kb on + strand, within Psyr_1446at 1636.560 kb on - strand, within Psyr_1446at 1636.560 kb on - strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.583 kb on + strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.584 kb on - strand, within Psyr_1446at 1636.602 kb on + strand, within Psyr_1446at 1636.661 kb on + strand, within Psyr_1446at 1636.661 kb on + strand, within Psyr_1446at 1636.661 kb on + strand, within Psyr_1446at 1636.662 kb on - strand, within Psyr_1446at 1636.662 kb on - strand, within Psyr_1446at 1636.662 kb on - strand, within Psyr_1446at 1636.662 kb on - strand, within Psyr_1446at 1636.662 kb on - strand, within Psyr_1446at 1636.676 kb on + strand, within Psyr_1446at 1636.676 kb on + strand, within Psyr_1446at 1636.676 kb on + strand, within Psyr_1446at 1636.676 kb on + strand, within Psyr_1446at 1636.676 kb on + strand, within Psyr_1446at 1636.676 kb on + strand, within Psyr_1446at 1636.676 kb on + strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.677 kb on - strand, within Psyr_1446at 1636.714 kb on - strand, within Psyr_1446at 1636.795 kb on - strand, within Psyr_1446at 1636.810 kb on + strand, within Psyr_1446at 1636.810 kb on + strand, within Psyr_1446at 1636.810 kb on + strand, within Psyr_1446at 1636.811 kb on - strandat 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.811 kb on - strand, within Psyr_1446at 1636.968 kb on + strand, within Psyr_1447at 1636.969 kb on - strand, within Psyr_1447at 1637.062 kb on - strand, within Psyr_1447at 1637.175 kb on - strand, within Psyr_1447at 1637.277 kb on + strandat 1637.314 kb on + strandat 1637.314 kb on + strandat 1637.315 kb on - strandat 1637.315 kb on - strandat 1637.315 kb on - strandat 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.450 kb on + strand, within Psyr_1448at 1637.451 kb on - strand, within Psyr_1448at 1637.451 kb on - strand, within Psyr_1448at 1637.451 kb on - strand, within Psyr_1448at 1637.451 kb on - strand, within Psyr_1448at 1637.485 kb on + strand, within Psyr_1448at 1637.485 kb on + strand, within Psyr_1448at 1637.485 kb on + strand, within Psyr_1448at 1637.510 kb on + strand, within Psyr_1448at 1637.510 kb on + strand, within Psyr_1448at 1637.511 kb on - strand, within Psyr_1448at 1637.561 kb on + strand, within Psyr_1448at 1637.561 kb on + strand, within Psyr_1448at 1637.561 kb on + strand, within Psyr_1448at 1637.655 kb on + strandat 1637.655 kb on + strandat 1637.694 kb on + strandat 1637.694 kb on + strandat 1637.745 kb on + strand, within Psyr_1449at 1637.745 kb on + strand, within Psyr_1449at 1637.775 kb on - strand, within Psyr_1449at 1637.775 kb on - strand, within Psyr_1449at 1637.782 kb on + strand, within Psyr_1449at 1637.782 kb on + strand, within Psyr_1449at 1637.782 kb on + strand, within Psyr_1449at 1637.803 kb on + strand, within Psyr_1449at 1637.936 kb on - strandat 1637.936 kb on - strandat 1638.175 kb on + strand, within Psyr_1450at 1638.175 kb on + strand, within Psyr_1450at 1638.175 kb on + strand, within Psyr_1450at 1638.175 kb on + strand, within Psyr_1450at 1638.176 kb on - strand, within Psyr_1450at 1638.176 kb on - strand, within Psyr_1450at 1638.176 kb on - strand, within Psyr_1450at 1638.176 kb on - strand, within Psyr_1450at 1638.198 kb on + strand, within Psyr_1450at 1638.198 kb on + strand, within Psyr_1450at 1638.198 kb on + strand, within Psyr_1450at 1638.199 kb on - strand, within Psyr_1450at 1638.199 kb on - strand, within Psyr_1450at 1638.199 kb on - strand, within Psyr_1450at 1638.290 kb on + strandat 1638.291 kb on - strandat 1638.298 kb on + strandat 1638.298 kb on + strandat 1638.298 kb on + strandat 1638.298 kb on + strandat 1638.298 kb on + strandat 1638.298 kb on + strandat 1638.298 kb on + strandat 1638.299 kb on - strandat 1638.299 kb on - strandat 1638.299 kb on - strandat 1638.299 kb on - strandat 1638.299 kb on - strandat 1638.336 kb on + strandat 1638.351 kb on - strandat 1638.351 kb on - strandat 1638.351 kb on - strandat 1638.588 kb on + strand, within Psyr_1451

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,636,284 - Psyr_1446 0.11 +1.8
1,636,284 - Psyr_1446 0.11 +1.1
1,636,284 - Psyr_1446 0.11 +0.1
1,636,284 - Psyr_1446 0.11 +2.4
1,636,332 + Psyr_1446 0.18 -3.5
1,636,332 + Psyr_1446 0.18 +3.1
1,636,332 + Psyr_1446 0.18 +3.2
1,636,332 + Psyr_1446 0.18 +1.1
1,636,332 + Psyr_1446 0.18 -1.9
1,636,332 + Psyr_1446 0.18 +2.9
1,636,332 + Psyr_1446 0.18 -1.2
1,636,333 - Psyr_1446 0.18 -1.9
1,636,333 - Psyr_1446 0.18 -1.8
1,636,333 - Psyr_1446 0.18 +1.9
1,636,336 + Psyr_1446 0.19 +3.6
1,636,336 + Psyr_1446 0.19 +4.2
1,636,336 + Psyr_1446 0.19 +2.9
1,636,336 + Psyr_1446 0.19 -2.8
1,636,336 + Psyr_1446 0.19 -0.7
1,636,336 + Psyr_1446 0.19 +3.8
1,636,336 + Psyr_1446 0.19 -1.2
1,636,336 + Psyr_1446 0.19 -0.8
1,636,336 + Psyr_1446 0.19 -0.9
1,636,336 + Psyr_1446 0.19 +1.1
1,636,336 + Psyr_1446 0.19 +1.1
1,636,336 + Psyr_1446 0.19 -0.1
1,636,336 + Psyr_1446 0.19 +3.4
1,636,336 + Psyr_1446 0.19 -0.2
1,636,336 + Psyr_1446 0.19 +0.1
1,636,336 + Psyr_1446 0.19 -3.0
1,636,337 - Psyr_1446 0.19 +2.1
1,636,337 - Psyr_1446 0.19 +0.6
1,636,337 - Psyr_1446 0.19 +0.1
1,636,337 - Psyr_1446 0.19 +3.4
1,636,337 - Psyr_1446 0.19 +1.1
1,636,337 - Psyr_1446 0.19 -1.1
1,636,337 - Psyr_1446 0.19 -1.8
1,636,337 - Psyr_1446 0.19 -1.8
1,636,337 - Psyr_1446 0.19 +3.4
1,636,337 - Psyr_1446 0.19 +2.1
1,636,337 - Psyr_1446 0.19 -1.0
1,636,337 - Psyr_1446 0.19 -0.0
1,636,391 + Psyr_1446 0.27 +0.1
1,636,392 - Psyr_1446 0.27 +3.8
1,636,392 - Psyr_1446 0.27 +0.7
1,636,392 - Psyr_1446 0.27 -0.9
1,636,434 + Psyr_1446 0.33 +2.4
1,636,516 + Psyr_1446 0.46 +0.1
1,636,516 + Psyr_1446 0.46 +3.1
1,636,517 - Psyr_1446 0.46 -2.1
1,636,517 - Psyr_1446 0.46 -0.8
1,636,517 - Psyr_1446 0.46 -0.9
1,636,559 + Psyr_1446 0.52 +2.1
1,636,560 - Psyr_1446 0.52 +3.6
1,636,560 - Psyr_1446 0.52 -0.5
1,636,583 + Psyr_1446 0.56 -0.9
1,636,583 + Psyr_1446 0.56 -3.4
1,636,583 + Psyr_1446 0.56 -1.3
1,636,583 + Psyr_1446 0.56 +2.4
1,636,583 + Psyr_1446 0.56 +2.9
1,636,583 + Psyr_1446 0.56 +2.9
1,636,583 + Psyr_1446 0.56 +3.1
1,636,583 + Psyr_1446 0.56 +2.9
1,636,583 + Psyr_1446 0.56 -0.4
1,636,583 + Psyr_1446 0.56 -1.3
1,636,583 + Psyr_1446 0.56 -0.5
1,636,583 + Psyr_1446 0.56 -2.9
1,636,584 - Psyr_1446 0.56 -2.3
1,636,584 - Psyr_1446 0.56 +2.9
1,636,584 - Psyr_1446 0.56 +3.6
1,636,584 - Psyr_1446 0.56 +0.1
1,636,584 - Psyr_1446 0.56 -0.5
1,636,584 - Psyr_1446 0.56 +2.1
1,636,584 - Psyr_1446 0.56 +0.5
1,636,584 - Psyr_1446 0.56 -1.7
1,636,584 - Psyr_1446 0.56 +2.9
1,636,584 - Psyr_1446 0.56 +2.1
1,636,584 - Psyr_1446 0.56 -0.5
1,636,584 - Psyr_1446 0.56 -1.8
1,636,584 - Psyr_1446 0.56 -2.4
1,636,584 - Psyr_1446 0.56 +1.1
1,636,584 - Psyr_1446 0.56 -1.5
1,636,584 - Psyr_1446 0.56 -0.1
1,636,584 - Psyr_1446 0.56 -0.7
1,636,584 - Psyr_1446 0.56 +3.4
1,636,602 + Psyr_1446 0.59 +3.1
1,636,661 + Psyr_1446 0.67 -0.9
1,636,661 + Psyr_1446 0.67 -0.9
1,636,661 + Psyr_1446 0.67 +1.6
1,636,662 - Psyr_1446 0.68 -2.3
1,636,662 - Psyr_1446 0.68 +1.6
1,636,662 - Psyr_1446 0.68 +2.4
1,636,662 - Psyr_1446 0.68 -1.1
1,636,662 - Psyr_1446 0.68 +2.9
1,636,676 + Psyr_1446 0.70 -1.1
1,636,676 + Psyr_1446 0.70 +1.5
1,636,676 + Psyr_1446 0.70 -1.6
1,636,676 + Psyr_1446 0.70 -0.4
1,636,676 + Psyr_1446 0.70 +0.4
1,636,676 + Psyr_1446 0.70 -3.6
1,636,676 + Psyr_1446 0.70 +2.1
1,636,677 - Psyr_1446 0.70 +1.1
1,636,677 - Psyr_1446 0.70 +0.1
1,636,677 - Psyr_1446 0.70 -0.1
1,636,677 - Psyr_1446 0.70 -1.8
1,636,677 - Psyr_1446 0.70 -0.9
1,636,677 - Psyr_1446 0.70 +3.2
1,636,677 - Psyr_1446 0.70 -1.5
1,636,677 - Psyr_1446 0.70 -1.5
1,636,714 - Psyr_1446 0.75 +2.6
1,636,795 - Psyr_1446 0.87 +2.6
1,636,810 + Psyr_1446 0.90 +2.6
1,636,810 + Psyr_1446 0.90 +0.1
1,636,810 + Psyr_1446 0.90 -0.8
1,636,811 - +0.1
1,636,811 - Psyr_1446 0.90 -0.3
1,636,811 - Psyr_1446 0.90 +4.3
1,636,811 - Psyr_1446 0.90 +1.1
1,636,811 - Psyr_1446 0.90 +0.5
1,636,811 - Psyr_1446 0.90 +2.6
1,636,811 - Psyr_1446 0.90 -1.6
1,636,811 - Psyr_1446 0.90 +2.3
1,636,811 - Psyr_1446 0.90 -0.2
1,636,811 - Psyr_1446 0.90 -0.6
1,636,811 - Psyr_1446 0.90 -0.2
1,636,811 - Psyr_1446 0.90 +2.1
1,636,968 + Psyr_1447 0.24 +0.1
1,636,969 - Psyr_1447 0.24 -2.2
1,637,062 - Psyr_1447 0.48 -1.1
1,637,175 - Psyr_1447 0.76 +0.5
1,637,277 + -1.8
1,637,314 + +2.6
1,637,314 + +0.3
1,637,315 - +2.9
1,637,315 - +1.1
1,637,315 - -0.8
1,637,450 + Psyr_1448 0.45 +0.1
1,637,450 + Psyr_1448 0.45 +0.0
1,637,450 + Psyr_1448 0.45 +3.4
1,637,450 + Psyr_1448 0.45 +0.3
1,637,450 + Psyr_1448 0.45 -0.1
1,637,450 + Psyr_1448 0.45 -2.9
1,637,450 + Psyr_1448 0.45 +0.4
1,637,450 + Psyr_1448 0.45 -2.8
1,637,450 + Psyr_1448 0.45 -3.0
1,637,450 + Psyr_1448 0.45 -1.9
1,637,451 - Psyr_1448 0.46 -1.3
1,637,451 - Psyr_1448 0.46 -3.8
1,637,451 - Psyr_1448 0.46 -0.8
1,637,451 - Psyr_1448 0.46 +3.2
1,637,485 + Psyr_1448 0.55 +2.6
1,637,485 + Psyr_1448 0.55 -0.5
1,637,485 + Psyr_1448 0.55 -0.4
1,637,510 + Psyr_1448 0.62 +2.4
1,637,510 + Psyr_1448 0.62 +3.4
1,637,511 - Psyr_1448 0.62 +1.1
1,637,561 + Psyr_1448 0.75 -0.4
1,637,561 + Psyr_1448 0.75 +2.3
1,637,561 + Psyr_1448 0.75 +0.5
1,637,655 + -0.3
1,637,655 + -0.4
1,637,694 + +2.4
1,637,694 + +3.1
1,637,745 + Psyr_1449 0.31 -2.7
1,637,745 + Psyr_1449 0.31 -0.4
1,637,775 - Psyr_1449 0.43 -2.5
1,637,775 - Psyr_1449 0.43 -1.4
1,637,782 + Psyr_1449 0.46 +0.1
1,637,782 + Psyr_1449 0.46 +2.9
1,637,782 + Psyr_1449 0.46 -0.0
1,637,803 + Psyr_1449 0.55 +0.5
1,637,936 - +0.9
1,637,936 - -2.9
1,638,175 + Psyr_1450 0.74 +2.4
1,638,175 + Psyr_1450 0.74 +1.4
1,638,175 + Psyr_1450 0.74 -1.7
1,638,175 + Psyr_1450 0.74 -0.5
1,638,176 - Psyr_1450 0.74 +2.6
1,638,176 - Psyr_1450 0.74 -1.6
1,638,176 - Psyr_1450 0.74 -0.5
1,638,176 - Psyr_1450 0.74 -0.9
1,638,198 + Psyr_1450 0.80 -0.4
1,638,198 + Psyr_1450 0.80 -0.4
1,638,198 + Psyr_1450 0.80 -0.0
1,638,199 - Psyr_1450 0.80 +2.4
1,638,199 - Psyr_1450 0.80 -0.9
1,638,199 - Psyr_1450 0.80 +0.2
1,638,290 + +0.5
1,638,291 - -2.3
1,638,298 + -0.5
1,638,298 + +1.1
1,638,298 + +4.6
1,638,298 + +3.2
1,638,298 + +4.6
1,638,298 + +2.9
1,638,298 + +1.6
1,638,299 - +3.5
1,638,299 - +0.1
1,638,299 - +0.3
1,638,299 - +0.1
1,638,299 - -2.8
1,638,336 + +1.1
1,638,351 - -1.5
1,638,351 - -4.4
1,638,351 - -2.4
1,638,588 + Psyr_1451 0.72 +0.1

Or see this region's nucleotide sequence