Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1349 and Psyr_1350 are separated by 117 nucleotides Psyr_1350 and Psyr_1351 are separated by 74 nucleotides
Psyr_1349: Psyr_1349 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,528,101 to 1,529,291
_1349
Psyr_1350: Psyr_1350 - site-2 protease, Metallo peptidase, MEROPS family M50B, at 1,529,409 to 1,530,761
_1350
Psyr_1351: Psyr_1351 - surface antigen (D15):Surface antigen variable number, at 1,530,836 to 1,533,211
_1351
Position (kb) 1529
1530
1531 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 1529.419 kb on + strand at 1529.419 kb on + strand at 1529.419 kb on + strand at 1529.419 kb on + strand at 1529.420 kb on - strand at 1529.420 kb on - strand at 1529.420 kb on - strand at 1529.420 kb on - strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.421 kb on + strand at 1529.422 kb on - strand at 1529.422 kb on - strand at 1529.422 kb on - strand at 1529.422 kb on - strand at 1529.422 kb on - strand at 1529.422 kb on - strand at 1529.422 kb on - strand at 1529.422 kb on - strand at 1529.581 kb on - strand, within Psyr_1350 at 1529.581 kb on - strand, within Psyr_1350 at 1529.581 kb on - strand, within Psyr_1350 at 1529.611 kb on - strand, within Psyr_1350 at 1529.879 kb on + strand, within Psyr_1350 at 1529.970 kb on - strand, within Psyr_1350 at 1529.995 kb on + strand, within Psyr_1350 at 1530.503 kb on + strand, within Psyr_1350 at 1530.569 kb on + strand, within Psyr_1350 at 1530.633 kb on + strand at 1530.721 kb on + strand at 1530.721 kb on + strand at 1530.759 kb on + strand at 1530.822 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,529,419 + +0.2 1,529,419 + +2.6 1,529,419 + -1.8 1,529,419 + -2.5 1,529,420 - +1.6 1,529,420 - +2.4 1,529,420 - +0.0 1,529,420 - +1.6 1,529,421 + -3.3 1,529,421 + -1.1 1,529,421 + +1.0 1,529,421 + +1.6 1,529,421 + +3.0 1,529,421 + -0.5 1,529,421 + +1.0 1,529,421 + -0.8 1,529,421 + -2.8 1,529,421 + +3.4 1,529,421 + +0.0 1,529,421 + -1.9 1,529,421 + -0.0 1,529,421 + -4.0 1,529,421 + +2.4 1,529,422 - +0.0 1,529,422 - -2.3 1,529,422 - -1.7 1,529,422 - -4.2 1,529,422 - -3.0 1,529,422 - -1.2 1,529,422 - -3.1 1,529,422 - -3.5 1,529,581 - Psyr_1350 0.13 -2.0 1,529,581 - Psyr_1350 0.13 +0.0 1,529,581 - Psyr_1350 0.13 +1.6 1,529,611 - Psyr_1350 0.15 +0.0 1,529,879 + Psyr_1350 0.35 -5.1 1,529,970 - Psyr_1350 0.41 -1.7 1,529,995 + Psyr_1350 0.43 -3.1 1,530,503 + Psyr_1350 0.81 +0.0 1,530,569 + Psyr_1350 0.86 -1.1 1,530,633 + +0.5 1,530,721 + -2.3 1,530,721 + -2.1 1,530,759 + +1.0 1,530,822 + +3.2
Or see this region's nucleotide sequence