Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1314

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1313 and Psyr_1314 are separated by 203 nucleotidesPsyr_1314 and Psyr_1315 overlap by 4 nucleotidesPsyr_1315 and Psyr_1316 are separated by 79 nucleotides Psyr_1313: Psyr_1313 - conserved hypothetical protein, at 1,490,743 to 1,492,020 _1313 Psyr_1314: Psyr_1314 - lipoprotein, putative, at 1,492,224 to 1,493,120 _1314 Psyr_1315: Psyr_1315 - lipoprotein, putative, at 1,493,117 to 1,493,437 _1315 Psyr_1316: Psyr_1316 - OmpA/MotB, at 1,493,517 to 1,494,299 _1316 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1491.352 kb on + strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.353 kb on - strand, within Psyr_1313at 1491.395 kb on + strand, within Psyr_1313at 1491.395 kb on + strand, within Psyr_1313at 1491.395 kb on + strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.396 kb on - strand, within Psyr_1313at 1491.677 kb on - strand, within Psyr_1313at 1491.677 kb on - strand, within Psyr_1313at 1491.746 kb on - strand, within Psyr_1313at 1491.770 kb on - strand, within Psyr_1313at 1491.770 kb on - strand, within Psyr_1313at 1491.770 kb on - strand, within Psyr_1313at 1491.775 kb on + strand, within Psyr_1313at 1491.775 kb on + strand, within Psyr_1313at 1491.775 kb on + strand, within Psyr_1313at 1491.775 kb on + strand, within Psyr_1313at 1491.775 kb on + strand, within Psyr_1313at 1491.775 kb on + strand, within Psyr_1313at 1491.775 kb on + strand, within Psyr_1313at 1491.776 kb on - strand, within Psyr_1313at 1491.776 kb on - strand, within Psyr_1313at 1491.776 kb on - strand, within Psyr_1313at 1491.776 kb on - strand, within Psyr_1313at 1491.776 kb on - strand, within Psyr_1313at 1491.853 kb on - strand, within Psyr_1313at 1491.853 kb on - strand, within Psyr_1313at 1491.853 kb on - strand, within Psyr_1313at 1491.853 kb on - strand, within Psyr_1313at 1491.859 kb on - strand, within Psyr_1313at 1491.904 kb on + strandat 1491.905 kb on - strandat 1491.905 kb on - strandat 1492.003 kb on + strandat 1492.018 kb on + strandat 1492.018 kb on + strandat 1492.019 kb on - strandat 1492.101 kb on + strandat 1492.101 kb on + strandat 1492.101 kb on + strandat 1492.101 kb on + strandat 1492.101 kb on + strandat 1492.102 kb on - strandat 1492.102 kb on - strandat 1492.102 kb on - strandat 1492.102 kb on - strandat 1492.102 kb on - strandat 1492.102 kb on - strandat 1492.102 kb on - strandat 1492.125 kb on - strandat 1492.125 kb on - strandat 1492.125 kb on - strandat 1492.125 kb on - strandat 1492.125 kb on - strandat 1492.125 kb on - strandat 1492.287 kb on + strandat 1492.287 kb on + strandat 1492.335 kb on + strand, within Psyr_1314at 1492.421 kb on + strand, within Psyr_1314at 1492.569 kb on + strand, within Psyr_1314at 1492.569 kb on + strand, within Psyr_1314at 1492.677 kb on + strand, within Psyr_1314at 1492.677 kb on + strand, within Psyr_1314at 1492.677 kb on + strand, within Psyr_1314at 1492.678 kb on - strand, within Psyr_1314at 1492.747 kb on - strand, within Psyr_1314at 1492.935 kb on + strand, within Psyr_1314at 1492.935 kb on + strand, within Psyr_1314at 1492.935 kb on + strand, within Psyr_1314at 1492.936 kb on - strand, within Psyr_1314at 1493.032 kb on - strandat 1493.199 kb on - strand, within Psyr_1315at 1493.205 kb on - strand, within Psyr_1315at 1493.282 kb on + strand, within Psyr_1315at 1493.282 kb on + strand, within Psyr_1315at 1493.283 kb on - strand, within Psyr_1315at 1493.283 kb on - strand, within Psyr_1315at 1493.283 kb on - strand, within Psyr_1315at 1493.283 kb on - strand, within Psyr_1315at 1493.283 kb on - strand, within Psyr_1315at 1493.350 kb on + strand, within Psyr_1315at 1493.447 kb on - strandat 1493.479 kb on + strandat 1493.479 kb on + strandat 1493.518 kb on + strandat 1493.518 kb on + strandat 1493.518 kb on + strandat 1493.519 kb on - strandat 1493.565 kb on - strandat 1493.565 kb on - strandat 1493.627 kb on - strand, within Psyr_1316at 1493.667 kb on + strand, within Psyr_1316at 1493.668 kb on - strand, within Psyr_1316at 1493.668 kb on - strand, within Psyr_1316at 1493.680 kb on - strand, within Psyr_1316at 1493.690 kb on + strand, within Psyr_1316at 1493.731 kb on + strand, within Psyr_1316at 1493.731 kb on + strand, within Psyr_1316at 1493.731 kb on + strand, within Psyr_1316at 1493.731 kb on + strand, within Psyr_1316at 1493.731 kb on + strand, within Psyr_1316at 1493.731 kb on + strand, within Psyr_1316at 1493.731 kb on + strand, within Psyr_1316at 1493.732 kb on - strand, within Psyr_1316at 1493.732 kb on - strand, within Psyr_1316at 1493.732 kb on - strand, within Psyr_1316at 1493.732 kb on - strand, within Psyr_1316at 1493.732 kb on - strand, within Psyr_1316at 1493.758 kb on + strand, within Psyr_1316at 1493.759 kb on - strand, within Psyr_1316at 1493.858 kb on - strand, within Psyr_1316at 1493.892 kb on - strand, within Psyr_1316at 1494.061 kb on + strand, within Psyr_1316at 1494.062 kb on - strand, within Psyr_1316

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
remove
1,491,352 + Psyr_1313 0.48 +0.2
1,491,353 - Psyr_1313 0.48 -0.7
1,491,353 - Psyr_1313 0.48 +3.7
1,491,353 - Psyr_1313 0.48 +2.3
1,491,353 - Psyr_1313 0.48 -0.2
1,491,353 - Psyr_1313 0.48 +0.0
1,491,353 - Psyr_1313 0.48 -0.5
1,491,353 - Psyr_1313 0.48 +2.0
1,491,395 + Psyr_1313 0.51 -2.2
1,491,395 + Psyr_1313 0.51 +1.0
1,491,395 + Psyr_1313 0.51 -1.2
1,491,396 - Psyr_1313 0.51 -0.6
1,491,396 - Psyr_1313 0.51 +4.3
1,491,396 - Psyr_1313 0.51 -1.4
1,491,396 - Psyr_1313 0.51 -0.4
1,491,396 - Psyr_1313 0.51 +4.1
1,491,396 - Psyr_1313 0.51 +1.6
1,491,396 - Psyr_1313 0.51 -1.1
1,491,677 - Psyr_1313 0.73 +0.2
1,491,677 - Psyr_1313 0.73 +0.4
1,491,746 - Psyr_1313 0.78 -0.4
1,491,770 - Psyr_1313 0.80 -0.8
1,491,770 - Psyr_1313 0.80 +1.6
1,491,770 - Psyr_1313 0.80 -0.4
1,491,775 + Psyr_1313 0.81 -0.1
1,491,775 + Psyr_1313 0.81 -0.4
1,491,775 + Psyr_1313 0.81 +1.0
1,491,775 + Psyr_1313 0.81 +1.1
1,491,775 + Psyr_1313 0.81 +1.0
1,491,775 + Psyr_1313 0.81 +0.0
1,491,775 + Psyr_1313 0.81 -1.7
1,491,776 - Psyr_1313 0.81 +1.0
1,491,776 - Psyr_1313 0.81 -0.4
1,491,776 - Psyr_1313 0.81 -1.6
1,491,776 - Psyr_1313 0.81 +0.5
1,491,776 - Psyr_1313 0.81 +0.5
1,491,853 - Psyr_1313 0.87 +1.6
1,491,853 - Psyr_1313 0.87 -3.1
1,491,853 - Psyr_1313 0.87 -0.5
1,491,853 - Psyr_1313 0.87 +2.3
1,491,859 - Psyr_1313 0.87 -1.4
1,491,904 + -1.5
1,491,905 - -3.2
1,491,905 - -0.2
1,492,003 + -0.5
1,492,018 + -1.6
1,492,018 + +2.6
1,492,019 - +2.0
1,492,101 + -1.8
1,492,101 + -1.9
1,492,101 + -2.9
1,492,101 + -1.5
1,492,101 + +3.5
1,492,102 - -0.5
1,492,102 - +0.0
1,492,102 - +0.0
1,492,102 - +2.0
1,492,102 - +2.3
1,492,102 - -2.6
1,492,102 - +4.5
1,492,125 - +4.7
1,492,125 - +4.1
1,492,125 - +3.5
1,492,125 - +0.0
1,492,125 - -1.0
1,492,125 - -1.5
1,492,287 + -2.8
1,492,287 + +0.0
1,492,335 + Psyr_1314 0.12 +0.1
1,492,421 + Psyr_1314 0.22 -1.7
1,492,569 + Psyr_1314 0.38 +1.4
1,492,569 + Psyr_1314 0.38 +2.0
1,492,677 + Psyr_1314 0.51 +2.0
1,492,677 + Psyr_1314 0.51 +2.8
1,492,677 + Psyr_1314 0.51 -2.0
1,492,678 - Psyr_1314 0.51 +3.8
1,492,747 - Psyr_1314 0.58 +2.6
1,492,935 + Psyr_1314 0.79 -0.3
1,492,935 + Psyr_1314 0.79 -0.7
1,492,935 + Psyr_1314 0.79 +3.3
1,492,936 - Psyr_1314 0.79 +3.6
1,493,032 - +4.1
1,493,199 - Psyr_1315 0.26 -1.9
1,493,205 - Psyr_1315 0.27 -0.2
1,493,282 + Psyr_1315 0.51 -0.8
1,493,282 + Psyr_1315 0.51 -1.7
1,493,283 - Psyr_1315 0.52 -0.7
1,493,283 - Psyr_1315 0.52 -0.7
1,493,283 - Psyr_1315 0.52 +2.6
1,493,283 - Psyr_1315 0.52 +2.3
1,493,283 - Psyr_1315 0.52 -0.2
1,493,350 + Psyr_1315 0.73 -0.5
1,493,447 - -1.0
1,493,479 + -1.6
1,493,479 + -1.1
1,493,518 + -0.0
1,493,518 + +0.4
1,493,518 + +0.3
1,493,519 - -0.5
1,493,565 - +3.3
1,493,565 - +0.3
1,493,627 - Psyr_1316 0.14 +3.0
1,493,667 + Psyr_1316 0.19 -0.2
1,493,668 - Psyr_1316 0.19 +4.3
1,493,668 - Psyr_1316 0.19 +1.0
1,493,680 - Psyr_1316 0.21 +3.5
1,493,690 + Psyr_1316 0.22 +1.7
1,493,731 + Psyr_1316 0.27 -1.0
1,493,731 + Psyr_1316 0.27 -0.6
1,493,731 + Psyr_1316 0.27 -0.2
1,493,731 + Psyr_1316 0.27 -0.6
1,493,731 + Psyr_1316 0.27 +4.0
1,493,731 + Psyr_1316 0.27 +2.0
1,493,731 + Psyr_1316 0.27 -3.4
1,493,732 - Psyr_1316 0.27 +0.3
1,493,732 - Psyr_1316 0.27 -0.8
1,493,732 - Psyr_1316 0.27 +2.0
1,493,732 - Psyr_1316 0.27 +0.3
1,493,732 - Psyr_1316 0.27 +0.2
1,493,758 + Psyr_1316 0.31 -0.8
1,493,759 - Psyr_1316 0.31 +2.3
1,493,858 - Psyr_1316 0.44 -2.0
1,493,892 - Psyr_1316 0.48 +0.1
1,494,061 + Psyr_1316 0.69 -2.8
1,494,062 - Psyr_1316 0.70 -0.4

Or see this region's nucleotide sequence