Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1306

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1305 and Psyr_1306 overlap by 1 nucleotidesPsyr_1306 and Psyr_1307 overlap by 4 nucleotides Psyr_1305: Psyr_1305 - MCP methyltransferase, CheR-type, at 1,480,614 to 1,481,894 _1305 Psyr_1306: Psyr_1306 - CheW-like protein, at 1,481,894 to 1,482,583 _1306 Psyr_1307: Psyr_1307 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 1,482,580 to 1,484,949 _1307 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1480.951 kb on - strand, within Psyr_1305at 1481.106 kb on + strand, within Psyr_1305at 1481.161 kb on + strand, within Psyr_1305at 1481.162 kb on - strand, within Psyr_1305at 1481.178 kb on - strand, within Psyr_1305at 1481.214 kb on + strand, within Psyr_1305at 1481.214 kb on + strand, within Psyr_1305at 1481.247 kb on + strand, within Psyr_1305at 1481.247 kb on + strand, within Psyr_1305at 1481.247 kb on + strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.578 kb on + strand, within Psyr_1305at 1481.748 kb on + strand, within Psyr_1305at 1481.749 kb on - strand, within Psyr_1305at 1481.763 kb on + strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.876 kb on + strandat 1482.069 kb on - strand, within Psyr_1306at 1482.147 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.271 kb on - strand, within Psyr_1306at 1482.271 kb on - strand, within Psyr_1306at 1482.325 kb on + strand, within Psyr_1306at 1482.338 kb on - strand, within Psyr_1306at 1482.654 kb on - strandat 1482.654 kb on - strandat 1482.685 kb on - strandat 1482.888 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.954 kb on + strand, within Psyr_1307at 1482.954 kb on + strand, within Psyr_1307at 1482.954 kb on + strandat 1482.955 kb on - strand, within Psyr_1307at 1482.955 kb on - strand, within Psyr_1307at 1482.955 kb on - strand, within Psyr_1307at 1482.955 kb on - strand, within Psyr_1307at 1483.028 kb on + strand, within Psyr_1307at 1483.515 kb on - strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.517 kb on - strand, within Psyr_1307

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,480,951 - Psyr_1305 0.26 +0.8
1,481,106 + Psyr_1305 0.38 +3.9
1,481,161 + Psyr_1305 0.43 -1.7
1,481,162 - Psyr_1305 0.43 +1.0
1,481,178 - Psyr_1305 0.44 -1.0
1,481,214 + Psyr_1305 0.47 -0.7
1,481,214 + Psyr_1305 0.47 +3.2
1,481,247 + Psyr_1305 0.49 +2.6
1,481,247 + Psyr_1305 0.49 -1.2
1,481,247 + Psyr_1305 0.49 -1.6
1,481,248 - Psyr_1305 0.49 +1.6
1,481,248 - Psyr_1305 0.49 -1.4
1,481,248 - Psyr_1305 0.49 +2.0
1,481,248 - Psyr_1305 0.49 -0.8
1,481,248 - Psyr_1305 0.49 +2.8
1,481,578 + Psyr_1305 0.75 -0.8
1,481,748 + Psyr_1305 0.89 +3.0
1,481,749 - Psyr_1305 0.89 +3.6
1,481,763 + Psyr_1305 0.90 -1.5
1,481,764 - Psyr_1305 0.90 -1.8
1,481,764 - Psyr_1305 0.90 +1.6
1,481,764 - Psyr_1305 0.90 -1.7
1,481,876 + +0.5
1,482,069 - Psyr_1306 0.25 +0.0
1,482,147 + Psyr_1306 0.37 -1.5
1,482,270 + Psyr_1306 0.54 +1.0
1,482,270 + Psyr_1306 0.54 -1.1
1,482,270 + Psyr_1306 0.54 +2.3
1,482,270 + Psyr_1306 0.54 -2.5
1,482,271 - Psyr_1306 0.55 -0.2
1,482,271 - Psyr_1306 0.55 -1.2
1,482,325 + Psyr_1306 0.62 -1.7
1,482,338 - Psyr_1306 0.64 +4.4
1,482,654 - -0.4
1,482,654 - -2.4
1,482,685 - +3.6
1,482,888 + Psyr_1307 0.13 +3.5
1,482,937 + Psyr_1307 0.15 +0.0
1,482,937 + Psyr_1307 0.15 +2.0
1,482,937 + Psyr_1307 0.15 +0.3
1,482,937 + Psyr_1307 0.15 -1.2
1,482,937 + Psyr_1307 0.15 -1.4
1,482,937 + Psyr_1307 0.15 +4.2
1,482,938 - Psyr_1307 0.15 +2.2
1,482,938 - Psyr_1307 0.15 +1.6
1,482,938 - Psyr_1307 0.15 +0.1
1,482,938 - Psyr_1307 0.15 -0.1
1,482,954 + Psyr_1307 0.16 -0.5
1,482,954 + Psyr_1307 0.16 -2.2
1,482,954 + +1.6
1,482,955 - Psyr_1307 0.16 +2.7
1,482,955 - Psyr_1307 0.16 +0.0
1,482,955 - Psyr_1307 0.16 +0.3
1,482,955 - Psyr_1307 0.16 +2.8
1,483,028 + Psyr_1307 0.19 -1.7
1,483,515 - Psyr_1307 0.39 -3.0
1,483,516 + Psyr_1307 0.39 +4.2
1,483,516 + Psyr_1307 0.39 +0.0
1,483,516 + Psyr_1307 0.39 -1.6
1,483,516 + Psyr_1307 0.39 +0.6
1,483,517 - Psyr_1307 0.40 +0.2

Or see this region's nucleotide sequence