Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1250

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1249 and Psyr_1250 are separated by 39 nucleotidesPsyr_1250 and Psyr_1251 are separated by 1 nucleotides Psyr_1249: Psyr_1249 - histidyl-tRNA synthetase, at 1,404,477 to 1,405,766 _1249 Psyr_1250: Psyr_1250 - conserved hypothetical protein, at 1,405,806 to 1,406,447 _1250 Psyr_1251: Psyr_1251 - quinoprotein, at 1,406,449 to 1,407,594 _1251 Position (kb) 1405 1406 1407Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1405.230 kb on + strand, within Psyr_1249at 1405.230 kb on + strand, within Psyr_1249at 1405.230 kb on + strand, within Psyr_1249at 1405.230 kb on + strand, within Psyr_1249at 1405.266 kb on + strand, within Psyr_1249at 1405.269 kb on + strand, within Psyr_1249at 1405.476 kb on + strand, within Psyr_1249at 1405.712 kb on + strandat 1405.712 kb on + strandat 1405.775 kb on + strandat 1405.799 kb on + strandat 1405.932 kb on + strand, within Psyr_1250at 1406.073 kb on + strand, within Psyr_1250at 1406.073 kb on + strand, within Psyr_1250at 1406.349 kb on + strand, within Psyr_1250at 1406.349 kb on + strand, within Psyr_1250at 1406.617 kb on + strand, within Psyr_1251at 1406.656 kb on + strand, within Psyr_1251at 1406.656 kb on + strand, within Psyr_1251at 1406.656 kb on + strand, within Psyr_1251at 1406.764 kb on + strand, within Psyr_1251at 1407.184 kb on + strand, within Psyr_1251at 1407.196 kb on + strand, within Psyr_1251at 1407.298 kb on + strand, within Psyr_1251at 1407.298 kb on + strand, within Psyr_1251at 1407.406 kb on + strand, within Psyr_1251at 1407.415 kb on + strand, within Psyr_1251

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,405,230 + Psyr_1249 0.58 -1.8
1,405,230 + Psyr_1249 0.58 +0.1
1,405,230 + Psyr_1249 0.58 +3.4
1,405,230 + Psyr_1249 0.58 -5.1
1,405,266 + Psyr_1249 0.61 +3.1
1,405,269 + Psyr_1249 0.61 +2.3
1,405,476 + Psyr_1249 0.77 +2.6
1,405,712 + -3.9
1,405,712 + -1.3
1,405,775 + +3.1
1,405,799 + -2.4
1,405,932 + Psyr_1250 0.20 +2.3
1,406,073 + Psyr_1250 0.42 +3.1
1,406,073 + Psyr_1250 0.42 +2.0
1,406,349 + Psyr_1250 0.85 +2.3
1,406,349 + Psyr_1250 0.85 +0.1
1,406,617 + Psyr_1251 0.15 +4.1
1,406,656 + Psyr_1251 0.18 +0.3
1,406,656 + Psyr_1251 0.18 +0.3
1,406,656 + Psyr_1251 0.18 +1.6
1,406,764 + Psyr_1251 0.27 +0.6
1,407,184 + Psyr_1251 0.64 +1.6
1,407,196 + Psyr_1251 0.65 +3.8
1,407,298 + Psyr_1251 0.74 -1.9
1,407,298 + Psyr_1251 0.74 +0.5
1,407,406 + Psyr_1251 0.84 -1.8
1,407,415 + Psyr_1251 0.84 +3.1

Or see this region's nucleotide sequence