Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1214 and Psyr_1215 are separated by 33 nucleotides Psyr_1215 and Psyr_1216 overlap by 1 nucleotides
Psyr_1214: Psyr_1214 - type III secretion protein HrpQ, at 1,370,403 to 1,371,377
_1214
Psyr_1215: Psyr_1215 - Type III secretion protein HrcV, at 1,371,411 to 1,373,498
_1215
Psyr_1216: Psyr_1216 - type III secretion outer membrane protein PopN, at 1,373,498 to 1,374,679
_1216
Position (kb) 1371
1372
1373
1374 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 1370.493 kb on + strand at 1370.493 kb on + strand at 1370.494 kb on - strand at 1370.494 kb on - strand at 1370.494 kb on - strand at 1370.494 kb on - strand at 1370.494 kb on - strand at 1370.497 kb on + strand at 1370.497 kb on + strand at 1370.497 kb on + strand at 1370.497 kb on + strand at 1370.497 kb on + strand at 1370.498 kb on - strand at 1370.498 kb on - strand at 1370.498 kb on - strand at 1370.498 kb on - strand at 1370.498 kb on - strand at 1370.498 kb on - strand at 1370.498 kb on - strand at 1370.498 kb on - strand at 1370.620 kb on + strand, within Psyr_1214 at 1370.844 kb on - strand, within Psyr_1214 at 1371.366 kb on + strand at 1371.366 kb on + strand at 1371.510 kb on + strand at 1371.510 kb on + strand at 1371.510 kb on + strand at 1371.510 kb on + strand at 1371.511 kb on - strand at 1371.511 kb on - strand at 1371.511 kb on - strand at 1371.519 kb on + strand at 1371.520 kb on - strand at 1371.520 kb on - strand at 1371.526 kb on + strand at 1371.526 kb on + strand at 1371.526 kb on + strand at 1371.526 kb on + strand at 1371.527 kb on - strand at 1371.527 kb on - strand at 1371.548 kb on + strand at 1371.548 kb on + strand at 1371.548 kb on + strand at 1371.548 kb on + strand at 1371.548 kb on + strand at 1371.549 kb on - strand at 1371.549 kb on - strand at 1371.549 kb on - strand at 1371.549 kb on - strand at 1371.549 kb on - strand at 1371.549 kb on - strand at 1371.763 kb on + strand, within Psyr_1215 at 1371.772 kb on + strand, within Psyr_1215 at 1371.772 kb on + strand, within Psyr_1215 at 1371.773 kb on - strand, within Psyr_1215 at 1371.773 kb on - strand, within Psyr_1215 at 1371.773 kb on - strand, within Psyr_1215 at 1371.773 kb on - strand, within Psyr_1215 at 1371.802 kb on + strand, within Psyr_1215 at 1371.802 kb on + strand, within Psyr_1215 at 1371.802 kb on + strand, within Psyr_1215 at 1371.802 kb on + strand, within Psyr_1215 at 1371.802 kb on + strand, within Psyr_1215 at 1371.802 kb on + strand, within Psyr_1215 at 1371.803 kb on - strand, within Psyr_1215 at 1372.242 kb on + strand, within Psyr_1215 at 1372.243 kb on - strand, within Psyr_1215 at 1372.249 kb on + strand, within Psyr_1215 at 1372.250 kb on - strand, within Psyr_1215 at 1372.250 kb on - strand, within Psyr_1215 at 1372.250 kb on - strand, within Psyr_1215 at 1372.250 kb on - strand, within Psyr_1215 at 1372.324 kb on + strand, within Psyr_1215 at 1372.356 kb on + strand, within Psyr_1215 at 1372.356 kb on + strand, within Psyr_1215 at 1372.439 kb on + strand, within Psyr_1215 at 1372.439 kb on + strand, within Psyr_1215 at 1372.439 kb on + strand, within Psyr_1215 at 1372.439 kb on + strand, within Psyr_1215 at 1372.440 kb on - strand, within Psyr_1215 at 1372.440 kb on - strand, within Psyr_1215 at 1372.440 kb on - strand, within Psyr_1215 at 1372.440 kb on - strand, within Psyr_1215 at 1372.484 kb on + strand, within Psyr_1215 at 1372.484 kb on + strand, within Psyr_1215 at 1372.484 kb on + strand, within Psyr_1215 at 1372.484 kb on + strand, within Psyr_1215 at 1372.485 kb on - strand, within Psyr_1215 at 1372.485 kb on - strand, within Psyr_1215 at 1372.485 kb on - strand, within Psyr_1215 at 1372.485 kb on - strand, within Psyr_1215 at 1372.786 kb on - strand, within Psyr_1215 at 1372.790 kb on + strand, within Psyr_1215 at 1372.791 kb on - strand, within Psyr_1215 at 1372.792 kb on + strand, within Psyr_1215 at 1372.792 kb on + strand, within Psyr_1215 at 1372.792 kb on + strand, within Psyr_1215 at 1372.792 kb on + strand, within Psyr_1215 at 1372.792 kb on + strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1372.793 kb on - strand, within Psyr_1215 at 1373.342 kb on + strand at 1373.342 kb on + strand at 1373.342 kb on + strand at 1373.342 kb on + strand at 1373.343 kb on - strand at 1373.343 kb on - strand at 1373.514 kb on + strand at 1373.514 kb on + strand at 1373.514 kb on + strand at 1373.514 kb on + strand at 1373.514 kb on + strand at 1373.515 kb on - strand at 1373.515 kb on - strand at 1373.515 kb on - strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.516 kb on + strand at 1373.517 kb on - strand at 1373.517 kb on - strand at 1373.517 kb on - strand at 1373.517 kb on - strand at 1373.517 kb on - strand at 1373.561 kb on + strand at 1373.562 kb on - strand at 1373.562 kb on - strand at 1373.567 kb on - strand at 1373.710 kb on + strand, within Psyr_1216 at 1373.711 kb on - strand, within Psyr_1216 at 1373.833 kb on + strand, within Psyr_1216 at 1373.833 kb on + strand, within Psyr_1216 at 1373.833 kb on + strand, within Psyr_1216 at 1373.833 kb on + strand, within Psyr_1216 at 1373.833 kb on + strand, within Psyr_1216 at 1373.834 kb on - strand, within Psyr_1216 at 1373.834 kb on - strand, within Psyr_1216 at 1373.834 kb on - strand, within Psyr_1216 at 1373.834 kb on - strand, within Psyr_1216 at 1373.834 kb on - strand, within Psyr_1216 at 1374.040 kb on - strand, within Psyr_1216 at 1374.051 kb on - strand, within Psyr_1216 at 1374.151 kb on + strand, within Psyr_1216 at 1374.152 kb on - strand, within Psyr_1216 at 1374.152 kb on - strand, within Psyr_1216 at 1374.170 kb on + strand, within Psyr_1216 at 1374.171 kb on - strand, within Psyr_1216 at 1374.171 kb on - strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.208 kb on + strand, within Psyr_1216 at 1374.208 kb on + strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.366 kb on + strand, within Psyr_1216 at 1374.367 kb on - strand, within Psyr_1216
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,370,493 + +0.9 1,370,493 + +0.6 1,370,494 - +3.3 1,370,494 - +2.5 1,370,494 - -1.4 1,370,494 - +3.4 1,370,494 - +0.6 1,370,497 + -1.7 1,370,497 + -0.3 1,370,497 + +3.7 1,370,497 + -0.6 1,370,497 + +0.7 1,370,498 - -0.2 1,370,498 - +2.0 1,370,498 - -2.2 1,370,498 - +4.4 1,370,498 - +3.3 1,370,498 - +0.1 1,370,498 - -0.6 1,370,498 - -1.1 1,370,620 + Psyr_1214 0.22 -0.2 1,370,844 - Psyr_1214 0.45 -0.0 1,371,366 + +2.5 1,371,366 + -3.0 1,371,510 + -1.0 1,371,510 + -2.3 1,371,510 + -3.7 1,371,510 + +3.7 1,371,511 - -0.6 1,371,511 - -0.5 1,371,511 - -2.2 1,371,519 + -1.5 1,371,520 - +0.3 1,371,520 - -3.3 1,371,526 + +1.5 1,371,526 + +2.0 1,371,526 + +2.8 1,371,526 + -0.4 1,371,527 - -0.1 1,371,527 - -1.4 1,371,548 + +0.2 1,371,548 + +2.5 1,371,548 + +0.3 1,371,548 + +0.4 1,371,548 + -1.9 1,371,549 - +4.7 1,371,549 - -0.4 1,371,549 - +4.2 1,371,549 - -1.6 1,371,549 - -1.5 1,371,549 - +0.2 1,371,763 + Psyr_1215 0.17 +3.3 1,371,772 + Psyr_1215 0.17 +4.3 1,371,772 + Psyr_1215 0.17 +2.3 1,371,773 - Psyr_1215 0.17 +4.6 1,371,773 - Psyr_1215 0.17 +0.8 1,371,773 - Psyr_1215 0.17 +4.1 1,371,773 - Psyr_1215 0.17 +2.0 1,371,802 + Psyr_1215 0.19 -2.6 1,371,802 + Psyr_1215 0.19 -1.5 1,371,802 + Psyr_1215 0.19 +3.4 1,371,802 + Psyr_1215 0.19 +2.4 1,371,802 + Psyr_1215 0.19 -1.0 1,371,802 + Psyr_1215 0.19 -2.7 1,371,803 - Psyr_1215 0.19 +1.5 1,372,242 + Psyr_1215 0.40 -0.4 1,372,243 - Psyr_1215 0.40 +3.0 1,372,249 + Psyr_1215 0.40 +1.5 1,372,250 - Psyr_1215 0.40 -1.9 1,372,250 - Psyr_1215 0.40 +3.7 1,372,250 - Psyr_1215 0.40 +0.0 1,372,250 - Psyr_1215 0.40 -1.2 1,372,324 + Psyr_1215 0.44 +2.8 1,372,356 + Psyr_1215 0.45 +2.0 1,372,356 + Psyr_1215 0.45 +0.3 1,372,439 + Psyr_1215 0.49 -0.4 1,372,439 + Psyr_1215 0.49 -1.1 1,372,439 + Psyr_1215 0.49 -1.3 1,372,439 + Psyr_1215 0.49 -0.9 1,372,440 - Psyr_1215 0.49 +0.3 1,372,440 - Psyr_1215 0.49 -2.5 1,372,440 - Psyr_1215 0.49 -1.0 1,372,440 - Psyr_1215 0.49 -0.0 1,372,484 + Psyr_1215 0.51 +0.1 1,372,484 + Psyr_1215 0.51 +0.4 1,372,484 + Psyr_1215 0.51 -0.0 1,372,484 + Psyr_1215 0.51 -1.5 1,372,485 - Psyr_1215 0.51 +2.0 1,372,485 - Psyr_1215 0.51 +1.0 1,372,485 - Psyr_1215 0.51 -0.0 1,372,485 - Psyr_1215 0.51 +4.4 1,372,786 - Psyr_1215 0.66 -3.7 1,372,790 + Psyr_1215 0.66 +0.4 1,372,791 - Psyr_1215 0.66 +2.8 1,372,792 + Psyr_1215 0.66 -1.6 1,372,792 + Psyr_1215 0.66 -1.5 1,372,792 + Psyr_1215 0.66 +3.1 1,372,792 + Psyr_1215 0.66 +4.2 1,372,792 + Psyr_1215 0.66 +1.5 1,372,793 - Psyr_1215 0.66 +0.4 1,372,793 - Psyr_1215 0.66 -0.0 1,372,793 - Psyr_1215 0.66 -1.0 1,372,793 - Psyr_1215 0.66 -3.0 1,372,793 - Psyr_1215 0.66 -1.3 1,372,793 - Psyr_1215 0.66 +3.3 1,372,793 - Psyr_1215 0.66 +0.7 1,372,793 - Psyr_1215 0.66 +2.3 1,373,342 + +2.0 1,373,342 + -2.5 1,373,342 + +0.2 1,373,342 + +0.7 1,373,343 - -1.6 1,373,343 - -1.7 1,373,514 + -0.1 1,373,514 + -1.4 1,373,514 + +2.5 1,373,514 + -3.2 1,373,514 + -0.0 1,373,515 - -0.9 1,373,515 - -0.7 1,373,515 - +4.0 1,373,516 + -1.2 1,373,516 + +2.8 1,373,516 + -0.0 1,373,516 + +2.3 1,373,516 + +5.5 1,373,516 + +0.2 1,373,516 + +1.0 1,373,516 + -1.5 1,373,516 + -0.9 1,373,517 - -0.9 1,373,517 - +1.5 1,373,517 - +0.8 1,373,517 - +1.5 1,373,517 - +3.7 1,373,561 + -4.4 1,373,562 - -0.4 1,373,562 - -1.7 1,373,567 - -0.2 1,373,710 + Psyr_1216 0.18 +2.8 1,373,711 - Psyr_1216 0.18 +5.1 1,373,833 + Psyr_1216 0.28 +0.8 1,373,833 + Psyr_1216 0.28 -0.2 1,373,833 + Psyr_1216 0.28 -1.0 1,373,833 + Psyr_1216 0.28 -0.5 1,373,833 + Psyr_1216 0.28 -2.7 1,373,834 - Psyr_1216 0.28 -1.9 1,373,834 - Psyr_1216 0.28 +0.0 1,373,834 - Psyr_1216 0.28 -2.5 1,373,834 - Psyr_1216 0.28 -1.4 1,373,834 - Psyr_1216 0.28 -1.3 1,374,040 - Psyr_1216 0.46 -0.4 1,374,051 - Psyr_1216 0.47 +0.7 1,374,151 + Psyr_1216 0.55 -4.0 1,374,152 - Psyr_1216 0.55 -1.9 1,374,152 - Psyr_1216 0.55 +2.0 1,374,170 + Psyr_1216 0.57 +2.5 1,374,171 - Psyr_1216 0.57 -0.2 1,374,171 - Psyr_1216 0.57 -5.1 1,374,174 + Psyr_1216 0.57 -2.4 1,374,174 + Psyr_1216 0.57 -0.9 1,374,174 + Psyr_1216 0.57 -0.4 1,374,174 + Psyr_1216 0.57 +3.4 1,374,174 + Psyr_1216 0.57 +3.4 1,374,174 + Psyr_1216 0.57 +2.8 1,374,174 + Psyr_1216 0.57 +2.3 1,374,174 + Psyr_1216 0.57 -1.5 1,374,175 - Psyr_1216 0.57 -1.9 1,374,175 - Psyr_1216 0.57 -1.5 1,374,175 - Psyr_1216 0.57 +2.5 1,374,175 - Psyr_1216 0.57 -0.0 1,374,175 - Psyr_1216 0.57 -3.4 1,374,175 - Psyr_1216 0.57 -0.7 1,374,175 - Psyr_1216 0.57 +0.1 1,374,208 + Psyr_1216 0.60 +0.7 1,374,208 + Psyr_1216 0.60 -0.7 1,374,209 - Psyr_1216 0.60 -1.9 1,374,209 - Psyr_1216 0.60 +3.0 1,374,209 - Psyr_1216 0.60 -0.6 1,374,366 + Psyr_1216 0.73 -1.1 1,374,367 - Psyr_1216 0.74 +1.5
Or see this region's nucleotide sequence