Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1179

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1177 and Psyr_1178 are separated by 349 nucleotidesPsyr_1178 and Psyr_1179 are separated by 63 nucleotidesPsyr_1179 and Psyr_1180 are separated by 204 nucleotidesPsyr_1180 and Psyr_1181 are separated by 74 nucleotides Psyr_1177: Psyr_1177 - ISPsy9, transposase OrfA, at 1,331,164 to 1,331,703 _1177 Psyr_1178: Psyr_1178 - conserved hypothetical protein, at 1,332,053 to 1,332,214 _1178 Psyr_1179: Psyr_1179 - Oligopeptide transporter OPT superfamily, at 1,332,278 to 1,334,023 _1179 Psyr_1180: Psyr_1180 - hypothetical protein, at 1,334,228 to 1,334,713 _1180 Psyr_1181: Psyr_1181 - Protein of unknown function DUF1375, at 1,334,788 to 1,335,075 _1181 Position (kb) 1332 1333 1334 1335Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1331.814 kb on - strandat 1331.814 kb on - strandat 1331.830 kb on + strandat 1331.835 kb on + strandat 1331.836 kb on - strandat 1331.836 kb on - strandat 1331.948 kb on + strandat 1331.948 kb on + strandat 1331.948 kb on + strandat 1331.948 kb on + strandat 1331.949 kb on - strandat 1332.126 kb on + strand, within Psyr_1178at 1332.126 kb on + strand, within Psyr_1178at 1332.126 kb on + strand, within Psyr_1178at 1332.126 kb on + strand, within Psyr_1178at 1332.126 kb on + strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.127 kb on - strand, within Psyr_1178at 1332.247 kb on + strandat 1332.247 kb on + strandat 1332.247 kb on + strandat 1332.247 kb on + strandat 1332.248 kb on - strandat 1332.703 kb on + strand, within Psyr_1179at 1332.703 kb on + strand, within Psyr_1179at 1332.703 kb on + strand, within Psyr_1179at 1332.703 kb on + strand, within Psyr_1179at 1332.704 kb on - strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.705 kb on + strand, within Psyr_1179at 1332.706 kb on - strand, within Psyr_1179at 1332.706 kb on - strand, within Psyr_1179at 1332.706 kb on - strand, within Psyr_1179at 1332.706 kb on - strand, within Psyr_1179at 1332.706 kb on - strand, within Psyr_1179at 1332.706 kb on - strand, within Psyr_1179at 1332.706 kb on - strand, within Psyr_1179at 1332.941 kb on - strand, within Psyr_1179at 1333.448 kb on + strand, within Psyr_1179at 1333.449 kb on - strand, within Psyr_1179at 1333.449 kb on - strand, within Psyr_1179at 1333.539 kb on + strand, within Psyr_1179at 1333.539 kb on + strand, within Psyr_1179at 1333.539 kb on + strand, within Psyr_1179at 1333.539 kb on + strand, within Psyr_1179at 1333.540 kb on - strand, within Psyr_1179at 1333.540 kb on - strand, within Psyr_1179at 1333.540 kb on - strand, within Psyr_1179at 1333.540 kb on - strand, within Psyr_1179at 1333.540 kb on - strand, within Psyr_1179at 1333.540 kb on - strand, within Psyr_1179at 1333.620 kb on + strand, within Psyr_1179at 1333.620 kb on + strand, within Psyr_1179at 1333.708 kb on + strand, within Psyr_1179at 1333.708 kb on + strand, within Psyr_1179at 1333.708 kb on + strand, within Psyr_1179at 1333.709 kb on - strand, within Psyr_1179at 1333.709 kb on - strand, within Psyr_1179at 1333.709 kb on - strand, within Psyr_1179at 1333.709 kb on - strand, within Psyr_1179at 1333.710 kb on + strand, within Psyr_1179at 1333.711 kb on - strand, within Psyr_1179at 1333.909 kb on - strandat 1333.965 kb on - strandat 1334.057 kb on + strandat 1334.057 kb on + strandat 1334.057 kb on + strandat 1334.057 kb on + strandat 1334.057 kb on + strandat 1334.057 kb on + strandat 1334.057 kb on + strandat 1334.058 kb on - strandat 1334.058 kb on - strandat 1334.058 kb on - strandat 1334.058 kb on - strandat 1334.060 kb on - strandat 1334.060 kb on - strandat 1334.060 kb on - strandat 1334.091 kb on - strandat 1334.091 kb on - strandat 1334.109 kb on + strandat 1334.109 kb on + strandat 1334.185 kb on + strandat 1334.186 kb on - strandat 1334.186 kb on - strandat 1334.229 kb on + strandat 1334.229 kb on + strandat 1334.230 kb on - strandat 1334.230 kb on - strandat 1334.230 kb on - strandat 1334.230 kb on - strandat 1334.249 kb on - strandat 1334.249 kb on - strandat 1334.371 kb on + strand, within Psyr_1180at 1334.371 kb on + strand, within Psyr_1180at 1334.372 kb on - strand, within Psyr_1180at 1334.372 kb on - strand, within Psyr_1180at 1334.372 kb on - strand, within Psyr_1180at 1334.372 kb on - strand, within Psyr_1180at 1334.372 kb on - strand, within Psyr_1180at 1334.391 kb on + strand, within Psyr_1180at 1334.392 kb on - strand, within Psyr_1180at 1334.392 kb on - strand, within Psyr_1180at 1334.407 kb on + strand, within Psyr_1180at 1334.408 kb on - strand, within Psyr_1180at 1334.408 kb on - strand, within Psyr_1180at 1334.408 kb on - strand, within Psyr_1180at 1334.408 kb on - strand, within Psyr_1180at 1334.458 kb on + strand, within Psyr_1180at 1334.458 kb on + strand, within Psyr_1180at 1334.556 kb on + strand, within Psyr_1180at 1334.556 kb on + strand, within Psyr_1180at 1334.556 kb on + strand, within Psyr_1180at 1334.556 kb on + strand, within Psyr_1180at 1334.557 kb on - strand, within Psyr_1180at 1334.557 kb on - strand, within Psyr_1180at 1334.666 kb on - strandat 1334.738 kb on - strandat 1334.762 kb on + strandat 1334.762 kb on + strandat 1334.762 kb on + strandat 1334.762 kb on + strandat 1334.762 kb on + strandat 1334.763 kb on - strandat 1334.763 kb on - strandat 1334.763 kb on - strandat 1334.763 kb on - strandat 1334.873 kb on + strand, within Psyr_1181at 1334.949 kb on + strand, within Psyr_1181at 1334.950 kb on - strand, within Psyr_1181at 1334.950 kb on - strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.011 kb on + strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181at 1335.012 kb on - strand, within Psyr_1181

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,331,814 - -1.3
1,331,814 - +3.0
1,331,830 + +0.1
1,331,835 + -0.5
1,331,836 - +4.3
1,331,836 - +2.0
1,331,948 + +3.3
1,331,948 + -1.4
1,331,948 + +3.8
1,331,948 + +2.0
1,331,949 - -1.0
1,332,126 + Psyr_1178 0.45 -0.0
1,332,126 + Psyr_1178 0.45 +3.6
1,332,126 + Psyr_1178 0.45 -0.8
1,332,126 + Psyr_1178 0.45 -0.7
1,332,126 + Psyr_1178 0.45 +0.8
1,332,127 - Psyr_1178 0.46 -2.4
1,332,127 - Psyr_1178 0.46 +3.4
1,332,127 - Psyr_1178 0.46 +1.0
1,332,127 - Psyr_1178 0.46 +2.6
1,332,127 - Psyr_1178 0.46 +3.0
1,332,127 - Psyr_1178 0.46 -0.4
1,332,127 - Psyr_1178 0.46 +0.3
1,332,127 - Psyr_1178 0.46 -0.0
1,332,127 - Psyr_1178 0.46 -1.0
1,332,127 - Psyr_1178 0.46 -0.5
1,332,127 - Psyr_1178 0.46 +1.6
1,332,127 - Psyr_1178 0.46 -0.3
1,332,247 + +4.1
1,332,247 + +2.0
1,332,247 + -0.4
1,332,247 + -0.0
1,332,248 - -1.5
1,332,703 + Psyr_1179 0.24 -0.4
1,332,703 + Psyr_1179 0.24 -1.8
1,332,703 + Psyr_1179 0.24 -0.6
1,332,703 + Psyr_1179 0.24 -1.4
1,332,704 - Psyr_1179 0.24 -0.0
1,332,705 + Psyr_1179 0.24 +0.8
1,332,705 + Psyr_1179 0.24 +2.0
1,332,705 + Psyr_1179 0.24 -1.4
1,332,705 + Psyr_1179 0.24 +1.0
1,332,705 + Psyr_1179 0.24 -2.1
1,332,705 + Psyr_1179 0.24 -3.6
1,332,705 + Psyr_1179 0.24 -2.6
1,332,705 + Psyr_1179 0.24 -0.0
1,332,705 + Psyr_1179 0.24 -2.0
1,332,705 + Psyr_1179 0.24 -0.6
1,332,705 + Psyr_1179 0.24 +0.4
1,332,705 + Psyr_1179 0.24 -1.8
1,332,705 + Psyr_1179 0.24 -1.4
1,332,705 + Psyr_1179 0.24 -0.6
1,332,705 + Psyr_1179 0.24 -2.2
1,332,706 - Psyr_1179 0.25 +0.5
1,332,706 - Psyr_1179 0.25 +3.8
1,332,706 - Psyr_1179 0.25 -0.4
1,332,706 - Psyr_1179 0.25 -0.0
1,332,706 - Psyr_1179 0.25 +1.7
1,332,706 - Psyr_1179 0.25 +2.0
1,332,706 - Psyr_1179 0.25 +2.6
1,332,941 - Psyr_1179 0.38 +2.6
1,333,448 + Psyr_1179 0.67 -1.1
1,333,449 - Psyr_1179 0.67 +3.1
1,333,449 - Psyr_1179 0.67 +0.3
1,333,539 + Psyr_1179 0.72 +2.0
1,333,539 + Psyr_1179 0.72 -0.8
1,333,539 + Psyr_1179 0.72 -0.4
1,333,539 + Psyr_1179 0.72 -1.7
1,333,540 - Psyr_1179 0.72 +2.6
1,333,540 - Psyr_1179 0.72 -1.4
1,333,540 - Psyr_1179 0.72 +4.5
1,333,540 - Psyr_1179 0.72 -2.8
1,333,540 - Psyr_1179 0.72 -1.6
1,333,540 - Psyr_1179 0.72 -1.1
1,333,620 + Psyr_1179 0.77 -0.4
1,333,620 + Psyr_1179 0.77 -2.5
1,333,708 + Psyr_1179 0.82 -2.8
1,333,708 + Psyr_1179 0.82 +2.3
1,333,708 + Psyr_1179 0.82 -0.7
1,333,709 - Psyr_1179 0.82 -0.6
1,333,709 - Psyr_1179 0.82 +2.8
1,333,709 - Psyr_1179 0.82 -0.5
1,333,709 - Psyr_1179 0.82 +0.0
1,333,710 + Psyr_1179 0.82 -1.6
1,333,711 - Psyr_1179 0.82 +2.6
1,333,909 - +2.3
1,333,965 - +3.7
1,334,057 + +2.8
1,334,057 + -0.9
1,334,057 + -1.6
1,334,057 + +1.6
1,334,057 + +2.6
1,334,057 + -1.7
1,334,057 + +2.0
1,334,058 - -0.6
1,334,058 - +0.2
1,334,058 - -2.6
1,334,058 - +1.6
1,334,060 - +0.2
1,334,060 - -0.8
1,334,060 - +2.0
1,334,091 - +1.0
1,334,091 - +2.0
1,334,109 + -0.4
1,334,109 + -2.5
1,334,185 + +4.4
1,334,186 - +1.0
1,334,186 - +0.4
1,334,229 + -0.2
1,334,229 + +2.3
1,334,230 - -1.1
1,334,230 - +2.0
1,334,230 - -2.1
1,334,230 - -1.4
1,334,249 - -1.9
1,334,249 - +1.0
1,334,371 + Psyr_1180 0.29 -0.3
1,334,371 + Psyr_1180 0.29 +0.4
1,334,372 - Psyr_1180 0.30 -4.0
1,334,372 - Psyr_1180 0.30 +1.0
1,334,372 - Psyr_1180 0.30 -2.6
1,334,372 - Psyr_1180 0.30 -0.0
1,334,372 - Psyr_1180 0.30 +1.0
1,334,391 + Psyr_1180 0.34 +2.0
1,334,392 - Psyr_1180 0.34 -0.8
1,334,392 - Psyr_1180 0.34 -1.5
1,334,407 + Psyr_1180 0.37 -1.3
1,334,408 - Psyr_1180 0.37 -0.8
1,334,408 - Psyr_1180 0.37 -2.1
1,334,408 - Psyr_1180 0.37 -0.8
1,334,408 - Psyr_1180 0.37 +0.5
1,334,458 + Psyr_1180 0.47 +0.4
1,334,458 + Psyr_1180 0.47 -0.3
1,334,556 + Psyr_1180 0.67 +2.3
1,334,556 + Psyr_1180 0.67 -3.1
1,334,556 + Psyr_1180 0.67 -3.8
1,334,556 + Psyr_1180 0.67 -0.6
1,334,557 - Psyr_1180 0.68 -0.4
1,334,557 - Psyr_1180 0.68 -4.0
1,334,666 - -2.7
1,334,738 - +2.8
1,334,762 + -0.4
1,334,762 + -0.0
1,334,762 + +1.0
1,334,762 + -0.7
1,334,762 + -2.0
1,334,763 - -0.7
1,334,763 - +1.6
1,334,763 - +2.8
1,334,763 - +2.8
1,334,873 + Psyr_1181 0.30 -1.5
1,334,949 + Psyr_1181 0.56 -1.1
1,334,950 - Psyr_1181 0.56 +0.3
1,334,950 - Psyr_1181 0.56 -0.9
1,335,011 + Psyr_1181 0.77 -0.4
1,335,011 + Psyr_1181 0.77 +4.3
1,335,011 + Psyr_1181 0.77 +1.0
1,335,011 + Psyr_1181 0.77 -1.7
1,335,011 + Psyr_1181 0.77 +3.1
1,335,011 + Psyr_1181 0.77 +2.8
1,335,011 + Psyr_1181 0.77 +2.0
1,335,011 + Psyr_1181 0.77 -3.2
1,335,012 - Psyr_1181 0.78 -1.8
1,335,012 - Psyr_1181 0.78 -0.0
1,335,012 - Psyr_1181 0.78 -1.3
1,335,012 - Psyr_1181 0.78 -0.2
1,335,012 - Psyr_1181 0.78 +0.6
1,335,012 - Psyr_1181 0.78 +2.6
1,335,012 - Psyr_1181 0.78 +0.6
1,335,012 - Psyr_1181 0.78 -1.0
1,335,012 - Psyr_1181 0.78 +1.0

Or see this region's nucleotide sequence