Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1129 and Psyr_1130 are separated by 292 nucleotides Psyr_1130 and Psyr_1131 are separated by 330 nucleotides Psyr_1131 and Psyr_1132 are separated by 21 nucleotides
Psyr_1129: Psyr_1129 - Secretion protein HlyD, at 1,280,128 to 1,281,294
_1129
Psyr_1130: Psyr_1130 - conserved hypothetical protein, at 1,281,587 to 1,281,967
_1130
Psyr_1131: Psyr_1131 - Fimbrial protein, at 1,282,298 to 1,282,882
_1131
Psyr_1132: Psyr_1132 - pili assembly chaperone:Bacterial pili assembly chaperone, at 1,282,904 to 1,283,698
_1132
Position (kb) 1281
1282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1280.592 kb on + strand, within Psyr_1129 at 1280.592 kb on + strand, within Psyr_1129 at 1280.593 kb on - strand, within Psyr_1129 at 1280.775 kb on - strand, within Psyr_1129 at 1280.775 kb on - strand, within Psyr_1129 at 1281.143 kb on - strand, within Psyr_1129 at 1281.143 kb on - strand, within Psyr_1129 at 1281.294 kb on + strand at 1281.295 kb on - strand at 1281.295 kb on - strand at 1281.295 kb on - strand at 1281.347 kb on + strand at 1281.347 kb on + strand at 1281.451 kb on + strand at 1281.455 kb on + strand at 1281.455 kb on + strand at 1281.455 kb on + strand at 1281.455 kb on + strand at 1281.455 kb on + strand at 1281.455 kb on + strand at 1281.455 kb on + strand at 1281.455 kb on + strand at 1281.456 kb on - strand at 1281.456 kb on - strand at 1281.456 kb on - strand at 1281.456 kb on - strand at 1281.456 kb on - strand at 1281.456 kb on - strand at 1281.456 kb on - strand at 1281.456 kb on - strand at 1281.468 kb on + strand at 1281.468 kb on + strand at 1281.468 kb on + strand at 1281.468 kb on + strand at 1281.486 kb on + strand at 1281.507 kb on - strand at 1281.552 kb on + strand at 1281.571 kb on - strand at 1281.640 kb on + strand, within Psyr_1130 at 1281.718 kb on + strand, within Psyr_1130 at 1281.718 kb on + strand, within Psyr_1130 at 1281.718 kb on + strand, within Psyr_1130 at 1281.719 kb on - strand, within Psyr_1130 at 1281.733 kb on + strand, within Psyr_1130 at 1281.734 kb on - strand, within Psyr_1130 at 1281.884 kb on + strand, within Psyr_1130 at 1281.959 kb on + strand at 1281.959 kb on + strand at 1281.965 kb on + strand at 1281.965 kb on + strand at 1281.966 kb on - strand at 1281.966 kb on - strand at 1281.970 kb on - strand at 1282.045 kb on + strand at 1282.045 kb on + strand at 1282.045 kb on + strand at 1282.045 kb on + strand at 1282.046 kb on - strand at 1282.046 kb on - strand at 1282.046 kb on - strand at 1282.046 kb on - strand at 1282.050 kb on - strand at 1282.050 kb on - strand at 1282.050 kb on - strand at 1282.145 kb on + strand at 1282.145 kb on + strand at 1282.145 kb on + strand at 1282.146 kb on - strand at 1282.146 kb on - strand at 1282.147 kb on + strand at 1282.147 kb on + strand at 1282.148 kb on - strand at 1282.152 kb on - strand at 1282.228 kb on - strand at 1282.240 kb on - strand at 1282.241 kb on + strand at 1282.276 kb on + strand at 1282.276 kb on + strand at 1282.277 kb on - strand at 1282.315 kb on + strand at 1282.315 kb on + strand at 1282.315 kb on + strand at 1282.315 kb on + strand at 1282.316 kb on - strand at 1282.411 kb on + strand, within Psyr_1131 at 1282.412 kb on - strand, within Psyr_1131 at 1282.586 kb on + strand, within Psyr_1131 at 1282.586 kb on + strand, within Psyr_1131 at 1282.587 kb on - strand, within Psyr_1131 at 1282.587 kb on - strand, within Psyr_1131 at 1282.587 kb on - strand, within Psyr_1131 at 1282.609 kb on + strand, within Psyr_1131 at 1282.609 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.816 kb on + strand, within Psyr_1131 at 1282.817 kb on - strand, within Psyr_1131 at 1282.874 kb on + strand at 1282.874 kb on + strand at 1282.874 kb on + strand at 1282.875 kb on - strand at 1282.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,280,592 + Psyr_1129 0.40 -1.4 1,280,592 + Psyr_1129 0.40 +3.3 1,280,593 - Psyr_1129 0.40 -1.2 1,280,775 - Psyr_1129 0.55 +0.7 1,280,775 - Psyr_1129 0.55 -1.0 1,281,143 - Psyr_1129 0.87 -1.8 1,281,143 - Psyr_1129 0.87 +3.5 1,281,294 + +0.4 1,281,295 - +0.1 1,281,295 - -0.9 1,281,295 - -0.8 1,281,347 + +0.2 1,281,347 + -0.6 1,281,451 + +0.5 1,281,455 + +2.8 1,281,455 + +1.5 1,281,455 + -1.4 1,281,455 + +2.8 1,281,455 + -0.0 1,281,455 + -0.1 1,281,455 + +2.6 1,281,455 + -2.3 1,281,456 - +3.3 1,281,456 - +3.1 1,281,456 - -0.4 1,281,456 - +1.0 1,281,456 - -2.1 1,281,456 - +3.4 1,281,456 - +0.4 1,281,456 - -1.3 1,281,468 + -0.2 1,281,468 + -3.1 1,281,468 + -1.5 1,281,468 + -1.0 1,281,486 + -1.3 1,281,507 - +2.3 1,281,552 + +4.5 1,281,571 - -2.5 1,281,640 + Psyr_1130 0.14 +1.7 1,281,718 + Psyr_1130 0.34 -0.9 1,281,718 + Psyr_1130 0.34 +3.1 1,281,718 + Psyr_1130 0.34 +4.4 1,281,719 - Psyr_1130 0.35 -1.7 1,281,733 + Psyr_1130 0.38 +0.7 1,281,734 - Psyr_1130 0.39 +2.0 1,281,884 + Psyr_1130 0.78 -1.7 1,281,959 + -0.5 1,281,959 + -3.2 1,281,965 + +1.3 1,281,965 + +1.6 1,281,966 - +0.6 1,281,966 - +2.3 1,281,970 - -1.1 1,282,045 + -0.7 1,282,045 + -2.5 1,282,045 + +2.0 1,282,045 + +2.6 1,282,046 - +0.5 1,282,046 - -1.6 1,282,046 - +3.6 1,282,046 - -2.2 1,282,050 - -3.6 1,282,050 - -0.6 1,282,050 - -2.6 1,282,145 + +3.3 1,282,145 + -2.0 1,282,145 + +1.6 1,282,146 - -2.6 1,282,146 - +2.8 1,282,147 + +3.1 1,282,147 + +3.8 1,282,148 - -0.0 1,282,152 - -0.9 1,282,228 - +2.3 1,282,240 - -0.0 1,282,241 + +2.3 1,282,276 + -0.8 1,282,276 + +1.6 1,282,277 - -1.6 1,282,315 + +3.6 1,282,315 + +3.7 1,282,315 + +0.5 1,282,315 + +1.0 1,282,316 - -3.4 1,282,411 + Psyr_1131 0.19 +3.1 1,282,412 - Psyr_1131 0.19 +1.0 1,282,586 + Psyr_1131 0.49 +4.4 1,282,586 + Psyr_1131 0.49 +1.6 1,282,587 - Psyr_1131 0.49 +0.2 1,282,587 - Psyr_1131 0.49 -2.4 1,282,587 - Psyr_1131 0.49 -0.0 1,282,609 + Psyr_1131 0.53 -1.8 1,282,609 + Psyr_1131 0.53 -0.4 1,282,808 + Psyr_1131 0.87 -2.2 1,282,808 + Psyr_1131 0.87 +0.2 1,282,808 + Psyr_1131 0.87 +0.7 1,282,808 + Psyr_1131 0.87 +3.1 1,282,808 + Psyr_1131 0.87 +3.3 1,282,808 + Psyr_1131 0.87 +4.9 1,282,808 + Psyr_1131 0.87 +4.3 1,282,808 + Psyr_1131 0.87 +2.8 1,282,808 + Psyr_1131 0.87 -1.7 1,282,809 - Psyr_1131 0.87 -2.0 1,282,809 - Psyr_1131 0.87 -1.0 1,282,809 - Psyr_1131 0.87 +0.1 1,282,809 - Psyr_1131 0.87 -0.6 1,282,809 - Psyr_1131 0.87 -0.7 1,282,809 - Psyr_1131 0.87 -0.8 1,282,809 - Psyr_1131 0.87 -0.3 1,282,809 - Psyr_1131 0.87 -1.8 1,282,816 + Psyr_1131 0.89 +0.0 1,282,817 - Psyr_1131 0.89 -2.4 1,282,874 + -2.6 1,282,874 + +2.6 1,282,874 + -0.0 1,282,875 - -1.6 1,282,880 + -0.1
Or see this region's nucleotide sequence