Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1119

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1118 and Psyr_1119 are separated by 73 nucleotidesPsyr_1119 and Psyr_1120 are separated by 218 nucleotides Psyr_1118: Psyr_1118 - Aldose 1-epimerase, at 1,267,208 to 1,268,083 _1118 Psyr_1119: Psyr_1119 - Helix-turn-helix protein RpiR:Sugar isomerase (SIS), at 1,268,157 to 1,269,023 _1119 Psyr_1120: Psyr_1120 - glucose-6-phosphate 1-dehydrogenase, at 1,269,242 to 1,270,711 _1120 Position (kb) 1268 1269 1270Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1267.169 kb on - strandat 1267.280 kb on - strandat 1267.280 kb on - strandat 1267.315 kb on - strand, within Psyr_1118at 1267.475 kb on + strand, within Psyr_1118at 1267.709 kb on + strand, within Psyr_1118at 1267.710 kb on - strand, within Psyr_1118at 1267.769 kb on + strand, within Psyr_1118at 1268.141 kb on - strandat 1268.309 kb on + strand, within Psyr_1119at 1268.310 kb on - strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.315 kb on + strand, within Psyr_1119at 1268.315 kb on + strand, within Psyr_1119at 1268.316 kb on - strand, within Psyr_1119at 1268.321 kb on + strand, within Psyr_1119at 1268.354 kb on + strand, within Psyr_1119at 1268.567 kb on + strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.729 kb on + strand, within Psyr_1119at 1268.731 kb on + strand, within Psyr_1119at 1268.731 kb on + strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.773 kb on + strand, within Psyr_1119at 1268.773 kb on + strand, within Psyr_1119at 1268.774 kb on - strand, within Psyr_1119at 1268.774 kb on - strand, within Psyr_1119at 1269.048 kb on + strandat 1269.049 kb on - strandat 1269.049 kb on - strandat 1269.073 kb on + strandat 1269.073 kb on + strandat 1269.110 kb on + strandat 1269.142 kb on - strandat 1269.173 kb on + strandat 1269.178 kb on - strandat 1269.253 kb on + strandat 1269.329 kb on + strandat 1269.419 kb on + strand, within Psyr_1120at 1269.419 kb on + strand, within Psyr_1120at 1269.419 kb on + strand, within Psyr_1120at 1269.503 kb on + strand, within Psyr_1120at 1269.503 kb on + strand, within Psyr_1120at 1269.536 kb on + strand, within Psyr_1120at 1269.536 kb on + strand, within Psyr_1120at 1269.584 kb on + strand, within Psyr_1120at 1269.584 kb on + strand, within Psyr_1120at 1269.584 kb on + strand, within Psyr_1120at 1269.767 kb on + strand, within Psyr_1120at 1269.767 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.908 kb on + strand, within Psyr_1120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
remove
1,267,169 - +1.5
1,267,280 - +1.5
1,267,280 - -0.8
1,267,315 - Psyr_1118 0.12 +1.1
1,267,475 + Psyr_1118 0.30 +4.7
1,267,709 + Psyr_1118 0.57 -0.0
1,267,710 - Psyr_1118 0.57 -1.1
1,267,769 + Psyr_1118 0.64 +1.0
1,268,141 - +4.4
1,268,309 + Psyr_1119 0.18 +0.3
1,268,310 - Psyr_1119 0.18 +2.3
1,268,311 + Psyr_1119 0.18 -0.8
1,268,311 + Psyr_1119 0.18 +3.4
1,268,311 + Psyr_1119 0.18 -2.5
1,268,311 + Psyr_1119 0.18 +2.5
1,268,311 + Psyr_1119 0.18 -1.5
1,268,311 + Psyr_1119 0.18 -3.0
1,268,311 + Psyr_1119 0.18 +2.3
1,268,311 + Psyr_1119 0.18 -4.6
1,268,311 + Psyr_1119 0.18 -0.8
1,268,311 + Psyr_1119 0.18 -2.1
1,268,312 - Psyr_1119 0.18 +3.4
1,268,312 - Psyr_1119 0.18 +2.8
1,268,312 - Psyr_1119 0.18 +3.0
1,268,312 - Psyr_1119 0.18 +0.2
1,268,312 - Psyr_1119 0.18 +1.5
1,268,312 - Psyr_1119 0.18 +4.0
1,268,312 - Psyr_1119 0.18 +4.3
1,268,312 - Psyr_1119 0.18 +4.0
1,268,312 - Psyr_1119 0.18 +2.8
1,268,312 - Psyr_1119 0.18 -0.2
1,268,312 - Psyr_1119 0.18 +0.2
1,268,312 - Psyr_1119 0.18 -1.5
1,268,312 - Psyr_1119 0.18 +2.3
1,268,312 - Psyr_1119 0.18 -2.1
1,268,315 + Psyr_1119 0.18 -0.0
1,268,315 + Psyr_1119 0.18 -4.2
1,268,316 - Psyr_1119 0.18 +0.1
1,268,321 + Psyr_1119 0.19 -0.6
1,268,354 + Psyr_1119 0.23 +3.9
1,268,567 + Psyr_1119 0.47 +2.3
1,268,568 - Psyr_1119 0.47 -1.6
1,268,568 - Psyr_1119 0.47 -4.0
1,268,568 - Psyr_1119 0.47 -1.3
1,268,729 + Psyr_1119 0.66 +0.1
1,268,731 + Psyr_1119 0.66 -2.4
1,268,731 + Psyr_1119 0.66 -1.0
1,268,732 - Psyr_1119 0.66 -0.0
1,268,732 - Psyr_1119 0.66 -1.9
1,268,732 - Psyr_1119 0.66 -2.6
1,268,773 + Psyr_1119 0.71 -3.3
1,268,773 + Psyr_1119 0.71 +2.0
1,268,774 - Psyr_1119 0.71 -3.6
1,268,774 - Psyr_1119 0.71 -1.2
1,269,048 + -1.4
1,269,049 - +1.0
1,269,049 - -1.5
1,269,073 + -1.4
1,269,073 + -1.4
1,269,110 + +0.8
1,269,142 - -2.0
1,269,173 + +1.0
1,269,178 - +4.1
1,269,253 + -1.8
1,269,329 + -4.5
1,269,419 + Psyr_1120 0.12 +2.0
1,269,419 + Psyr_1120 0.12 -2.6
1,269,419 + Psyr_1120 0.12 +3.9
1,269,503 + Psyr_1120 0.18 -1.9
1,269,503 + Psyr_1120 0.18 +3.7
1,269,536 + Psyr_1120 0.20 -1.5
1,269,536 + Psyr_1120 0.20 +4.1
1,269,584 + Psyr_1120 0.23 -0.0
1,269,584 + Psyr_1120 0.23 -3.2
1,269,584 + Psyr_1120 0.23 -2.4
1,269,767 + Psyr_1120 0.36 +1.9
1,269,767 + Psyr_1120 0.36 -2.0
1,269,850 + Psyr_1120 0.41 +0.3
1,269,850 + Psyr_1120 0.41 -3.2
1,269,850 + Psyr_1120 0.41 -0.8
1,269,850 + Psyr_1120 0.41 +2.3
1,269,850 + Psyr_1120 0.41 +3.4
1,269,850 + Psyr_1120 0.41 -0.5
1,269,850 + Psyr_1120 0.41 -0.8
1,269,861 + Psyr_1120 0.42 +3.1
1,269,861 + Psyr_1120 0.42 -2.9
1,269,861 + Psyr_1120 0.42 +3.1
1,269,861 + Psyr_1120 0.42 -2.2
1,269,861 + Psyr_1120 0.42 +2.8
1,269,908 + Psyr_1120 0.45 -3.4

Or see this region's nucleotide sequence