Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1101 and Psyr_1102 are separated by 695 nucleotides Psyr_1102 and Psyr_1103 are separated by 98 nucleotides Psyr_1103 and Psyr_1104 overlap by 4 nucleotides
Psyr_1101: Psyr_1101 - Helix-turn-helix, Fis-type, at 1,246,586 to 1,248,094
_1101
Psyr_1102: Psyr_1102 - conserved hypothetical protein, at 1,248,790 to 1,249,146
_1102
Psyr_1103: Psyr_1103 - Protein of unknown function DUF454, at 1,249,245 to 1,249,703
_1103
Psyr_1104: Psyr_1104 - Heme oxygenase, at 1,249,700 to 1,250,314
_1104
Position (kb) 1248
1249
1250 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1247.979 kb on + strand at 1247.979 kb on + strand at 1247.979 kb on + strand at 1247.979 kb on + strand at 1247.980 kb on - strand at 1248.131 kb on + strand at 1248.131 kb on + strand at 1248.131 kb on + strand at 1248.131 kb on + strand at 1248.131 kb on + strand at 1248.131 kb on + strand at 1248.131 kb on + strand at 1248.132 kb on - strand at 1248.132 kb on - strand at 1248.132 kb on - strand at 1248.132 kb on - strand at 1248.132 kb on - strand at 1248.132 kb on - strand at 1248.132 kb on - strand at 1248.132 kb on - strand at 1248.213 kb on - strand at 1248.213 kb on - strand at 1248.213 kb on - strand at 1248.213 kb on - strand at 1248.213 kb on - strand at 1248.268 kb on - strand at 1248.268 kb on - strand at 1248.268 kb on - strand at 1248.458 kb on - strand at 1248.458 kb on - strand at 1248.458 kb on - strand at 1248.561 kb on - strand at 1248.648 kb on - strand at 1248.750 kb on + strand at 1248.751 kb on - strand at 1248.751 kb on - strand at 1248.791 kb on + strand at 1249.067 kb on + strand, within Psyr_1102 at 1249.085 kb on + strand, within Psyr_1102 at 1249.085 kb on + strand, within Psyr_1102 at 1249.085 kb on + strand, within Psyr_1102 at 1249.085 kb on + strand, within Psyr_1102 at 1249.085 kb on + strand, within Psyr_1102 at 1249.085 kb on + strand, within Psyr_1102 at 1249.085 kb on + strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.086 kb on - strand, within Psyr_1102 at 1249.142 kb on + strand at 1249.142 kb on + strand at 1249.142 kb on + strand at 1249.142 kb on + strand at 1249.142 kb on + strand at 1249.143 kb on - strand at 1249.143 kb on - strand at 1249.254 kb on + strand at 1249.254 kb on + strand at 1249.255 kb on - strand at 1249.255 kb on - strand at 1249.255 kb on - strand at 1249.287 kb on + strand at 1249.287 kb on + strand at 1249.287 kb on + strand at 1249.288 kb on - strand at 1249.288 kb on - strand at 1249.321 kb on + strand, within Psyr_1103 at 1249.321 kb on + strand, within Psyr_1103 at 1249.322 kb on - strand, within Psyr_1103 at 1249.322 kb on - strand, within Psyr_1103 at 1249.435 kb on + strand, within Psyr_1103 at 1249.436 kb on - strand, within Psyr_1103 at 1249.436 kb on - strand, within Psyr_1103 at 1249.436 kb on - strand, within Psyr_1103 at 1249.436 kb on - strand, within Psyr_1103 at 1249.436 kb on - strand, within Psyr_1103 at 1249.569 kb on + strand, within Psyr_1103 at 1249.569 kb on + strand, within Psyr_1103 at 1249.570 kb on - strand, within Psyr_1103 at 1249.603 kb on - strand, within Psyr_1103 at 1249.636 kb on + strand, within Psyr_1103 at 1249.636 kb on + strand, within Psyr_1103 at 1249.636 kb on + strand, within Psyr_1103 at 1249.636 kb on + strand, within Psyr_1103 at 1249.636 kb on + strand, within Psyr_1103 at 1249.637 kb on - strand, within Psyr_1103 at 1249.637 kb on - strand, within Psyr_1103 at 1249.637 kb on - strand, within Psyr_1103 at 1249.650 kb on + strand, within Psyr_1103 at 1249.681 kb on - strand at 1250.136 kb on + strand, within Psyr_1104 at 1250.137 kb on - strand, within Psyr_1104
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,247,979 + -1.4 1,247,979 + -1.9 1,247,979 + +1.5 1,247,979 + -1.2 1,247,980 - -0.0 1,248,131 + +1.0 1,248,131 + +0.9 1,248,131 + -1.0 1,248,131 + +3.7 1,248,131 + +2.5 1,248,131 + -1.1 1,248,131 + -2.4 1,248,132 - +1.5 1,248,132 - +3.0 1,248,132 - +2.3 1,248,132 - -3.3 1,248,132 - -1.9 1,248,132 - -0.0 1,248,132 - +2.0 1,248,132 - -2.0 1,248,213 - -0.0 1,248,213 - +0.3 1,248,213 - +1.4 1,248,213 - +0.4 1,248,213 - +0.6 1,248,268 - -4.0 1,248,268 - +0.9 1,248,268 - -1.1 1,248,458 - -0.4 1,248,458 - +2.0 1,248,458 - +1.1 1,248,561 - +3.4 1,248,648 - -0.0 1,248,750 + -1.4 1,248,751 - -2.1 1,248,751 - +4.5 1,248,791 + +2.8 1,249,067 + Psyr_1102 0.78 -1.7 1,249,085 + Psyr_1102 0.83 -1.8 1,249,085 + Psyr_1102 0.83 -0.2 1,249,085 + Psyr_1102 0.83 -2.1 1,249,085 + Psyr_1102 0.83 +1.5 1,249,085 + Psyr_1102 0.83 +4.2 1,249,085 + Psyr_1102 0.83 +4.0 1,249,085 + Psyr_1102 0.83 -1.0 1,249,086 - Psyr_1102 0.83 -1.3 1,249,086 - Psyr_1102 0.83 -1.2 1,249,086 - Psyr_1102 0.83 -1.5 1,249,086 - Psyr_1102 0.83 +3.8 1,249,086 - Psyr_1102 0.83 +3.9 1,249,086 - Psyr_1102 0.83 +1.5 1,249,086 - Psyr_1102 0.83 +0.6 1,249,086 - Psyr_1102 0.83 -2.7 1,249,142 + -1.4 1,249,142 + -1.5 1,249,142 + +0.8 1,249,142 + +3.1 1,249,142 + -0.3 1,249,143 - -1.6 1,249,143 - +4.8 1,249,254 + +2.0 1,249,254 + +3.4 1,249,255 - -0.4 1,249,255 - -1.1 1,249,255 - -1.5 1,249,287 + -0.7 1,249,287 + +2.0 1,249,287 + -1.9 1,249,288 - -0.8 1,249,288 - -0.3 1,249,321 + Psyr_1103 0.17 -0.1 1,249,321 + Psyr_1103 0.17 -4.0 1,249,322 - Psyr_1103 0.17 -0.3 1,249,322 - Psyr_1103 0.17 +3.3 1,249,435 + Psyr_1103 0.41 -0.0 1,249,436 - Psyr_1103 0.42 +1.0 1,249,436 - Psyr_1103 0.42 +0.1 1,249,436 - Psyr_1103 0.42 +3.1 1,249,436 - Psyr_1103 0.42 -1.9 1,249,436 - Psyr_1103 0.42 -2.0 1,249,569 + Psyr_1103 0.71 -0.8 1,249,569 + Psyr_1103 0.71 -0.0 1,249,570 - Psyr_1103 0.71 -3.3 1,249,603 - Psyr_1103 0.78 +0.1 1,249,636 + Psyr_1103 0.85 +4.5 1,249,636 + Psyr_1103 0.85 +2.0 1,249,636 + Psyr_1103 0.85 -0.0 1,249,636 + Psyr_1103 0.85 +0.1 1,249,636 + Psyr_1103 0.85 -0.6 1,249,637 - Psyr_1103 0.85 -1.4 1,249,637 - Psyr_1103 0.85 +4.1 1,249,637 - Psyr_1103 0.85 -2.2 1,249,650 + Psyr_1103 0.88 +3.0 1,249,681 - -0.8 1,250,136 + Psyr_1104 0.71 +1.5 1,250,137 - Psyr_1104 0.71 +3.1
Or see this region's nucleotide sequence