Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1074

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1073 and Psyr_1074 are separated by 10 nucleotidesPsyr_1074 and Psyr_1075 are separated by 10 nucleotidesPsyr_1075 and Psyr_1076 are separated by 153 nucleotides Psyr_1073: Psyr_1073 - amino acid ABC transporter membrane protein 1, PAAT family, at 1,216,047 to 1,217,228 _1073 Psyr_1074: Psyr_1074 - amino acid ABC transporter membrane protein 2, PAAT family, at 1,217,239 to 1,218,336 _1074 Psyr_1075: Psyr_1075 - amino acid ABC transporter ATP-binding protein, PAAT family, at 1,218,347 to 1,219,111 _1075 Psyr_1076: Psyr_1076 - Cyanate transport system protein, at 1,219,265 to 1,220,509 _1076 Position (kb) 1217 1218 1219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1216.266 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.284 kb on + strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.285 kb on - strand, within Psyr_1073at 1216.316 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.425 kb on + strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.426 kb on - strand, within Psyr_1073at 1216.486 kb on + strand, within Psyr_1073at 1216.524 kb on + strand, within Psyr_1073at 1216.853 kb on + strand, within Psyr_1073at 1216.854 kb on - strand, within Psyr_1073at 1216.854 kb on - strand, within Psyr_1073at 1216.854 kb on - strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.857 kb on + strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1216.858 kb on - strand, within Psyr_1073at 1217.155 kb on - strandat 1217.196 kb on + strandat 1217.196 kb on + strandat 1217.196 kb on + strandat 1217.197 kb on - strandat 1217.197 kb on - strandat 1217.197 kb on - strandat 1217.250 kb on + strandat 1217.250 kb on + strandat 1217.250 kb on + strandat 1217.251 kb on - strandat 1217.251 kb on - strandat 1217.251 kb on - strandat 1217.362 kb on + strand, within Psyr_1074at 1217.362 kb on + strand, within Psyr_1074at 1217.362 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.372 kb on - strand, within Psyr_1074at 1217.372 kb on - strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.650 kb on + strand, within Psyr_1074at 1217.688 kb on - strand, within Psyr_1074at 1217.968 kb on + strand, within Psyr_1074at 1217.968 kb on + strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1218.238 kb on + strandat 1218.239 kb on - strandat 1218.239 kb on - strandat 1218.280 kb on - strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.358 kb on + strandat 1218.358 kb on + strandat 1218.364 kb on + strandat 1218.364 kb on + strandat 1218.406 kb on - strandat 1218.406 kb on - strandat 1218.417 kb on - strandat 1218.432 kb on + strand, within Psyr_1075at 1218.432 kb on + strand, within Psyr_1075at 1218.432 kb on + strand, within Psyr_1075at 1218.432 kb on + strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.472 kb on + strand, within Psyr_1075at 1218.473 kb on - strand, within Psyr_1075at 1218.744 kb on - strand, within Psyr_1075at 1218.744 kb on - strand, within Psyr_1075at 1219.079 kb on - strandat 1219.161 kb on - strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.187 kb on - strandat 1219.187 kb on - strandat 1219.187 kb on - strandat 1219.187 kb on - strandat 1219.208 kb on + strandat 1219.208 kb on + strandat 1219.208 kb on + strandat 1219.208 kb on + strandat 1219.209 kb on - strandat 1219.209 kb on - strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.260 kb on - strandat 1219.260 kb on - strandat 1219.260 kb on - strandat 1219.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,216,266 + Psyr_1073 0.19 -1.9
1,216,284 + Psyr_1073 0.20 -0.7
1,216,284 + Psyr_1073 0.20 +0.5
1,216,284 + Psyr_1073 0.20 -1.7
1,216,284 + Psyr_1073 0.20 +0.2
1,216,285 - Psyr_1073 0.20 -0.8
1,216,285 - Psyr_1073 0.20 +1.6
1,216,285 - Psyr_1073 0.20 -0.6
1,216,285 - Psyr_1073 0.20 +3.0
1,216,285 - Psyr_1073 0.20 -0.9
1,216,285 - Psyr_1073 0.20 -0.2
1,216,316 + Psyr_1073 0.23 -2.3
1,216,425 + Psyr_1073 0.32 -0.1
1,216,425 + Psyr_1073 0.32 -0.0
1,216,425 + Psyr_1073 0.32 +2.0
1,216,425 + Psyr_1073 0.32 -1.5
1,216,426 - Psyr_1073 0.32 -0.5
1,216,426 - Psyr_1073 0.32 -1.4
1,216,426 - Psyr_1073 0.32 +0.7
1,216,426 - Psyr_1073 0.32 +3.2
1,216,426 - Psyr_1073 0.32 +2.8
1,216,486 + Psyr_1073 0.37 -2.1
1,216,524 + Psyr_1073 0.40 -0.9
1,216,853 + Psyr_1073 0.68 -2.7
1,216,854 - Psyr_1073 0.68 +0.9
1,216,854 - Psyr_1073 0.68 +3.0
1,216,854 - Psyr_1073 0.68 -1.9
1,216,857 + Psyr_1073 0.69 -1.0
1,216,857 + Psyr_1073 0.69 +3.3
1,216,857 + Psyr_1073 0.69 -2.4
1,216,857 + Psyr_1073 0.69 +1.6
1,216,857 + Psyr_1073 0.69 +1.6
1,216,857 + Psyr_1073 0.69 -2.1
1,216,857 + Psyr_1073 0.69 +1.1
1,216,857 + Psyr_1073 0.69 -2.7
1,216,857 + Psyr_1073 0.69 +3.0
1,216,857 + Psyr_1073 0.69 -1.8
1,216,857 + Psyr_1073 0.69 -0.7
1,216,858 - Psyr_1073 0.69 +4.2
1,216,858 - Psyr_1073 0.69 -2.5
1,216,858 - Psyr_1073 0.69 +0.9
1,216,858 - Psyr_1073 0.69 -0.6
1,216,858 - Psyr_1073 0.69 +0.5
1,217,155 - +0.1
1,217,196 + +0.6
1,217,196 + +1.0
1,217,196 + -1.0
1,217,197 - +3.8
1,217,197 - -1.2
1,217,197 - +3.4
1,217,250 + -2.6
1,217,250 + +1.0
1,217,250 + +0.7
1,217,251 - -0.7
1,217,251 - +3.2
1,217,251 - +1.0
1,217,362 + Psyr_1074 0.11 +0.4
1,217,362 + Psyr_1074 0.11 +1.0
1,217,362 + Psyr_1074 0.11 +4.2
1,217,371 + Psyr_1074 0.12 +1.0
1,217,371 + Psyr_1074 0.12 +1.7
1,217,371 + Psyr_1074 0.12 +2.3
1,217,372 - Psyr_1074 0.12 +1.6
1,217,372 - Psyr_1074 0.12 -1.1
1,217,500 + Psyr_1074 0.24 +0.9
1,217,500 + Psyr_1074 0.24 -0.7
1,217,500 + Psyr_1074 0.24 +4.1
1,217,500 + Psyr_1074 0.24 -1.6
1,217,500 + Psyr_1074 0.24 -1.2
1,217,500 + Psyr_1074 0.24 -1.1
1,217,500 + Psyr_1074 0.24 +2.0
1,217,500 + Psyr_1074 0.24 -0.6
1,217,500 + Psyr_1074 0.24 -2.5
1,217,500 + Psyr_1074 0.24 +4.4
1,217,500 + Psyr_1074 0.24 -1.2
1,217,500 + Psyr_1074 0.24 +0.2
1,217,501 - Psyr_1074 0.24 +1.4
1,217,501 - Psyr_1074 0.24 +2.0
1,217,501 - Psyr_1074 0.24 +0.7
1,217,501 - Psyr_1074 0.24 -1.0
1,217,506 + Psyr_1074 0.24 +0.3
1,217,506 + Psyr_1074 0.24 -2.8
1,217,506 + Psyr_1074 0.24 +3.4
1,217,506 + Psyr_1074 0.24 +1.7
1,217,506 + Psyr_1074 0.24 -0.2
1,217,507 - Psyr_1074 0.24 -1.2
1,217,507 - Psyr_1074 0.24 -0.0
1,217,507 - Psyr_1074 0.24 -1.2
1,217,507 - Psyr_1074 0.24 -0.9
1,217,650 + Psyr_1074 0.37 -0.8
1,217,688 - Psyr_1074 0.41 +2.6
1,217,968 + Psyr_1074 0.66 +0.5
1,217,968 + Psyr_1074 0.66 +1.5
1,217,969 - Psyr_1074 0.66 +3.3
1,217,969 - Psyr_1074 0.66 -1.4
1,217,969 - Psyr_1074 0.66 +2.6
1,218,238 + -1.5
1,218,239 - +1.4
1,218,239 - +1.6
1,218,280 - -0.9
1,218,309 + -1.6
1,218,309 + +0.3
1,218,309 + -0.8
1,218,309 + +2.3
1,218,309 + -0.9
1,218,310 - +1.4
1,218,310 - -0.6
1,218,310 - -0.5
1,218,310 - -1.1
1,218,310 - -0.7
1,218,310 - +0.2
1,218,310 - -0.4
1,218,358 + -1.2
1,218,358 + +0.2
1,218,364 + -0.5
1,218,364 + +1.0
1,218,406 - -2.2
1,218,406 - +1.6
1,218,417 - -1.6
1,218,432 + Psyr_1075 0.11 -1.1
1,218,432 + Psyr_1075 0.11 +2.8
1,218,432 + Psyr_1075 0.11 +2.3
1,218,432 + Psyr_1075 0.11 +0.1
1,218,433 - Psyr_1075 0.11 +3.0
1,218,433 - Psyr_1075 0.11 -1.8
1,218,433 - Psyr_1075 0.11 +2.3
1,218,433 - Psyr_1075 0.11 -2.6
1,218,472 + Psyr_1075 0.16 -0.3
1,218,473 - Psyr_1075 0.16 -1.0
1,218,744 - Psyr_1075 0.52 +3.0
1,218,744 - Psyr_1075 0.52 -1.9
1,219,079 - +3.8
1,219,161 - -0.7
1,219,186 + +2.6
1,219,186 + -2.8
1,219,186 + -0.6
1,219,186 + -0.8
1,219,186 + -1.0
1,219,186 + +1.0
1,219,186 + +3.6
1,219,186 + +2.6
1,219,187 - -1.4
1,219,187 - +0.4
1,219,187 - +2.4
1,219,187 - +2.3
1,219,208 + +3.9
1,219,208 + -0.8
1,219,208 + +3.3
1,219,208 + +2.0
1,219,209 - +4.0
1,219,209 - +2.6
1,219,259 + -2.2
1,219,259 + -2.3
1,219,259 + -2.3
1,219,259 + -2.2
1,219,259 + -0.5
1,219,259 + -2.3
1,219,260 - +2.8
1,219,260 - +2.6
1,219,260 - +3.3
1,219,260 - +0.2

Or see this region's nucleotide sequence