Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1042

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1041 and Psyr_1042 are separated by 136 nucleotidesPsyr_1042 and Psyr_1043 are separated by 46 nucleotides Psyr_1041: Psyr_1041 - transcriptional regulator, AraC family, at 1,176,188 to 1,177,063 _1041 Psyr_1042: Psyr_1042 - Protein of unknown function DUF6, at 1,177,200 to 1,178,102 _1042 Psyr_1043: Psyr_1043 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 1,178,149 to 1,179,123 _1043 Position (kb) 1177 1178 1179Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1176.210 kb on + strandat 1176.210 kb on + strandat 1176.211 kb on - strandat 1176.211 kb on - strandat 1176.361 kb on - strand, within Psyr_1041at 1176.361 kb on - strand, within Psyr_1041at 1176.492 kb on + strand, within Psyr_1041at 1176.762 kb on + strand, within Psyr_1041at 1176.762 kb on + strand, within Psyr_1041at 1176.762 kb on + strand, within Psyr_1041at 1176.763 kb on - strand, within Psyr_1041at 1176.763 kb on - strand, within Psyr_1041at 1176.763 kb on - strand, within Psyr_1041at 1176.824 kb on + strand, within Psyr_1041at 1176.825 kb on - strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.910 kb on + strand, within Psyr_1041at 1176.911 kb on - strand, within Psyr_1041at 1176.930 kb on + strand, within Psyr_1041at 1176.931 kb on - strand, within Psyr_1041at 1177.076 kb on - strandat 1177.084 kb on + strandat 1177.085 kb on - strandat 1177.089 kb on + strandat 1177.216 kb on - strandat 1177.343 kb on - strand, within Psyr_1042at 1177.343 kb on - strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.441 kb on - strand, within Psyr_1042at 1177.441 kb on - strand, within Psyr_1042at 1177.762 kb on - strand, within Psyr_1042at 1177.762 kb on - strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.812 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.890 kb on + strand, within Psyr_1042at 1177.891 kb on - strand, within Psyr_1042at 1177.904 kb on - strand, within Psyr_1042at 1177.933 kb on - strand, within Psyr_1042at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.269 kb on + strand, within Psyr_1043at 1178.270 kb on - strand, within Psyr_1043at 1178.270 kb on - strand, within Psyr_1043at 1178.270 kb on - strand, within Psyr_1043at 1178.751 kb on + strand, within Psyr_1043at 1178.752 kb on - strand, within Psyr_1043at 1178.753 kb on + strand, within Psyr_1043at 1178.753 kb on + strand, within Psyr_1043at 1178.754 kb on - strand, within Psyr_1043at 1178.754 kb on - strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.830 kb on + strand, within Psyr_1043at 1178.831 kb on - strand, within Psyr_1043at 1178.873 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.885 kb on + strand, within Psyr_1043at 1178.886 kb on - strand, within Psyr_1043at 1178.974 kb on + strand, within Psyr_1043at 1178.975 kb on - strand, within Psyr_1043at 1178.975 kb on - strand, within Psyr_1043at 1178.975 kb on - strand, within Psyr_1043

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,176,210 + +2.4
1,176,210 + +3.2
1,176,211 - +3.2
1,176,211 - +3.9
1,176,361 - Psyr_1041 0.20 +3.0
1,176,361 - Psyr_1041 0.20 +1.9
1,176,492 + Psyr_1041 0.35 -1.2
1,176,762 + Psyr_1041 0.66 -1.2
1,176,762 + Psyr_1041 0.66 -0.0
1,176,762 + Psyr_1041 0.66 -0.7
1,176,763 - Psyr_1041 0.66 -0.2
1,176,763 - Psyr_1041 0.66 +0.6
1,176,763 - Psyr_1041 0.66 +4.6
1,176,824 + Psyr_1041 0.73 -0.4
1,176,825 - Psyr_1041 0.73 -0.4
1,176,897 + Psyr_1041 0.81 -1.9
1,176,897 + Psyr_1041 0.81 +2.3
1,176,897 + Psyr_1041 0.81 +0.6
1,176,897 + Psyr_1041 0.81 -2.9
1,176,897 + Psyr_1041 0.81 +3.9
1,176,897 + Psyr_1041 0.81 +1.6
1,176,897 + Psyr_1041 0.81 +3.3
1,176,897 + Psyr_1041 0.81 +1.0
1,176,897 + Psyr_1041 0.81 -0.3
1,176,897 + Psyr_1041 0.81 -0.4
1,176,897 + Psyr_1041 0.81 -1.1
1,176,897 + Psyr_1041 0.81 -0.6
1,176,898 - Psyr_1041 0.81 -0.5
1,176,898 - Psyr_1041 0.81 +2.8
1,176,898 - Psyr_1041 0.81 +2.0
1,176,898 - Psyr_1041 0.81 +3.3
1,176,898 - Psyr_1041 0.81 -0.7
1,176,910 + Psyr_1041 0.82 -0.0
1,176,911 - Psyr_1041 0.83 -0.4
1,176,930 + Psyr_1041 0.85 +4.1
1,176,931 - Psyr_1041 0.85 -1.9
1,177,076 - -2.0
1,177,084 + -1.1
1,177,085 - -1.6
1,177,089 + -1.0
1,177,216 - +0.9
1,177,343 - Psyr_1042 0.16 -4.1
1,177,343 - Psyr_1042 0.16 +2.6
1,177,440 + Psyr_1042 0.27 +2.0
1,177,440 + Psyr_1042 0.27 -0.4
1,177,440 + Psyr_1042 0.27 +3.3
1,177,441 - Psyr_1042 0.27 -0.1
1,177,441 - Psyr_1042 0.27 +1.4
1,177,762 - Psyr_1042 0.62 +0.7
1,177,762 - Psyr_1042 0.62 +3.9
1,177,785 + Psyr_1042 0.65 -1.5
1,177,785 + Psyr_1042 0.65 +0.3
1,177,785 + Psyr_1042 0.65 +0.7
1,177,785 + Psyr_1042 0.65 -0.6
1,177,785 + Psyr_1042 0.65 +2.8
1,177,785 + Psyr_1042 0.65 +3.0
1,177,785 + Psyr_1042 0.65 +0.3
1,177,785 + Psyr_1042 0.65 +3.2
1,177,785 + Psyr_1042 0.65 -0.4
1,177,785 + Psyr_1042 0.65 -0.9
1,177,785 + Psyr_1042 0.65 +0.7
1,177,785 + Psyr_1042 0.65 -0.0
1,177,785 + Psyr_1042 0.65 -0.1
1,177,785 + Psyr_1042 0.65 -1.9
1,177,786 - Psyr_1042 0.65 -1.3
1,177,786 - Psyr_1042 0.65 -1.6
1,177,786 - Psyr_1042 0.65 +4.7
1,177,786 - Psyr_1042 0.65 +2.6
1,177,786 - Psyr_1042 0.65 -1.0
1,177,786 - Psyr_1042 0.65 -1.4
1,177,786 - Psyr_1042 0.65 +4.5
1,177,786 - Psyr_1042 0.65 +1.6
1,177,786 - Psyr_1042 0.65 +1.0
1,177,786 - Psyr_1042 0.65 -2.3
1,177,786 - Psyr_1042 0.65 +0.7
1,177,786 - Psyr_1042 0.65 -2.2
1,177,786 - Psyr_1042 0.65 +1.6
1,177,786 - Psyr_1042 0.65 -2.2
1,177,786 - Psyr_1042 0.65 +0.9
1,177,812 - Psyr_1042 0.68 +0.5
1,177,834 - Psyr_1042 0.70 -4.6
1,177,834 - Psyr_1042 0.70 -1.0
1,177,834 - Psyr_1042 0.70 -2.8
1,177,838 - Psyr_1042 0.71 +1.6
1,177,838 - Psyr_1042 0.71 +2.0
1,177,838 - Psyr_1042 0.71 -0.8
1,177,838 - Psyr_1042 0.71 +3.0
1,177,838 - Psyr_1042 0.71 -1.1
1,177,838 - Psyr_1042 0.71 +3.3
1,177,838 - Psyr_1042 0.71 -4.0
1,177,890 + Psyr_1042 0.76 -0.0
1,177,891 - Psyr_1042 0.77 +3.7
1,177,904 - Psyr_1042 0.78 -0.7
1,177,933 - Psyr_1042 0.81 +2.3
1,178,269 + Psyr_1043 0.12 +0.5
1,178,269 + Psyr_1043 0.12 +1.3
1,178,269 + Psyr_1043 0.12 +2.0
1,178,269 + Psyr_1043 0.12 -0.7
1,178,269 + Psyr_1043 0.12 -1.4
1,178,270 - Psyr_1043 0.12 +0.8
1,178,270 - Psyr_1043 0.12 +3.5
1,178,270 - Psyr_1043 0.12 +4.8
1,178,751 + Psyr_1043 0.62 -0.0
1,178,752 - Psyr_1043 0.62 -0.4
1,178,753 + Psyr_1043 0.62 -1.6
1,178,753 + Psyr_1043 0.62 -0.1
1,178,754 - Psyr_1043 0.62 -1.2
1,178,754 - Psyr_1043 0.62 +2.6
1,178,830 + Psyr_1043 0.70 +1.3
1,178,830 + Psyr_1043 0.70 -0.8
1,178,830 + Psyr_1043 0.70 -1.5
1,178,830 + Psyr_1043 0.70 -0.3
1,178,830 + Psyr_1043 0.70 -1.2
1,178,830 + Psyr_1043 0.70 -1.4
1,178,830 + Psyr_1043 0.70 +1.6
1,178,831 - Psyr_1043 0.70 +0.1
1,178,873 + Psyr_1043 0.74 -1.1
1,178,885 + Psyr_1043 0.75 +2.6
1,178,885 + Psyr_1043 0.75 -0.0
1,178,885 + Psyr_1043 0.75 -1.8
1,178,885 + Psyr_1043 0.75 +3.7
1,178,885 + Psyr_1043 0.75 +1.2
1,178,886 - Psyr_1043 0.76 -1.0
1,178,974 + Psyr_1043 0.85 +2.3
1,178,975 - Psyr_1043 0.85 +3.7
1,178,975 - Psyr_1043 0.85 -0.2
1,178,975 - Psyr_1043 0.85 -0.2

Or see this region's nucleotide sequence