Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1039 and Psyr_1040 overlap by 4 nucleotides Psyr_1040 and Psyr_1041 are separated by 210 nucleotides
Psyr_1039: Psyr_1039 - FecR protein, at 1,174,500 to 1,175,477
_1039
Psyr_1040: Psyr_1040 - RNA polymerase sigma factor, ECF subfamily, at 1,175,474 to 1,175,977
_1040
Psyr_1041: Psyr_1041 - transcriptional regulator, AraC family, at 1,176,188 to 1,177,063
_1041
Position (kb) 1175
1176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1174.845 kb on + strand, within Psyr_1039 at 1175.203 kb on - strand, within Psyr_1039 at 1175.478 kb on - strand at 1175.487 kb on + strand at 1175.488 kb on - strand at 1175.488 kb on - strand at 1175.488 kb on - strand at 1175.488 kb on - strand at 1175.488 kb on - strand at 1175.721 kb on + strand, within Psyr_1040 at 1175.721 kb on + strand, within Psyr_1040 at 1175.721 kb on + strand, within Psyr_1040 at 1175.722 kb on - strand, within Psyr_1040 at 1175.722 kb on - strand, within Psyr_1040 at 1175.724 kb on + strand, within Psyr_1040 at 1175.724 kb on + strand, within Psyr_1040 at 1175.724 kb on + strand, within Psyr_1040 at 1175.725 kb on - strand, within Psyr_1040 at 1175.819 kb on - strand, within Psyr_1040 at 1175.842 kb on + strand, within Psyr_1040 at 1175.931 kb on + strand at 1175.931 kb on + strand at 1175.931 kb on + strand at 1175.931 kb on + strand at 1176.125 kb on - strand at 1176.189 kb on + strand at 1176.189 kb on + strand at 1176.189 kb on + strand at 1176.189 kb on + strand at 1176.189 kb on + strand at 1176.190 kb on - strand at 1176.190 kb on - strand at 1176.210 kb on + strand at 1176.210 kb on + strand at 1176.211 kb on - strand at 1176.211 kb on - strand at 1176.361 kb on - strand, within Psyr_1041 at 1176.361 kb on - strand, within Psyr_1041 at 1176.492 kb on + strand, within Psyr_1041 at 1176.762 kb on + strand, within Psyr_1041 at 1176.762 kb on + strand, within Psyr_1041 at 1176.762 kb on + strand, within Psyr_1041 at 1176.763 kb on - strand, within Psyr_1041 at 1176.763 kb on - strand, within Psyr_1041 at 1176.763 kb on - strand, within Psyr_1041 at 1176.824 kb on + strand, within Psyr_1041 at 1176.825 kb on - strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.897 kb on + strand, within Psyr_1041 at 1176.898 kb on - strand, within Psyr_1041 at 1176.898 kb on - strand, within Psyr_1041 at 1176.898 kb on - strand, within Psyr_1041 at 1176.898 kb on - strand, within Psyr_1041 at 1176.898 kb on - strand, within Psyr_1041 at 1176.910 kb on + strand, within Psyr_1041 at 1176.911 kb on - strand, within Psyr_1041 at 1176.930 kb on + strand, within Psyr_1041 at 1176.931 kb on - strand, within Psyr_1041
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,174,845 + Psyr_1039 0.35 -1.2 1,175,203 - Psyr_1039 0.72 +4.6 1,175,478 - +1.6 1,175,487 + -4.0 1,175,488 - -1.7 1,175,488 - -1.6 1,175,488 - +0.5 1,175,488 - -2.0 1,175,488 - -0.3 1,175,721 + Psyr_1040 0.49 -1.3 1,175,721 + Psyr_1040 0.49 +2.6 1,175,721 + Psyr_1040 0.49 +3.7 1,175,722 - Psyr_1040 0.49 -1.6 1,175,722 - Psyr_1040 0.49 -0.9 1,175,724 + Psyr_1040 0.50 +4.5 1,175,724 + Psyr_1040 0.50 -1.5 1,175,724 + Psyr_1040 0.50 -2.1 1,175,725 - Psyr_1040 0.50 -1.3 1,175,819 - Psyr_1040 0.68 -1.9 1,175,842 + Psyr_1040 0.73 -0.9 1,175,931 + +2.3 1,175,931 + -2.1 1,175,931 + -0.2 1,175,931 + +0.6 1,176,125 - -0.0 1,176,189 + -1.2 1,176,189 + +0.5 1,176,189 + +0.4 1,176,189 + -0.1 1,176,189 + +1.0 1,176,190 - +1.6 1,176,190 - -0.1 1,176,210 + +2.4 1,176,210 + +3.2 1,176,211 - +3.2 1,176,211 - +3.9 1,176,361 - Psyr_1041 0.20 +3.0 1,176,361 - Psyr_1041 0.20 +1.9 1,176,492 + Psyr_1041 0.35 -1.2 1,176,762 + Psyr_1041 0.66 -1.2 1,176,762 + Psyr_1041 0.66 -0.0 1,176,762 + Psyr_1041 0.66 -0.7 1,176,763 - Psyr_1041 0.66 -0.2 1,176,763 - Psyr_1041 0.66 +0.6 1,176,763 - Psyr_1041 0.66 +4.6 1,176,824 + Psyr_1041 0.73 -0.4 1,176,825 - Psyr_1041 0.73 -0.4 1,176,897 + Psyr_1041 0.81 -1.9 1,176,897 + Psyr_1041 0.81 +2.3 1,176,897 + Psyr_1041 0.81 +0.6 1,176,897 + Psyr_1041 0.81 -2.9 1,176,897 + Psyr_1041 0.81 +3.9 1,176,897 + Psyr_1041 0.81 +1.6 1,176,897 + Psyr_1041 0.81 +3.3 1,176,897 + Psyr_1041 0.81 +1.0 1,176,897 + Psyr_1041 0.81 -0.3 1,176,897 + Psyr_1041 0.81 -0.4 1,176,897 + Psyr_1041 0.81 -1.1 1,176,897 + Psyr_1041 0.81 -0.6 1,176,898 - Psyr_1041 0.81 -0.5 1,176,898 - Psyr_1041 0.81 +2.8 1,176,898 - Psyr_1041 0.81 +2.0 1,176,898 - Psyr_1041 0.81 +3.3 1,176,898 - Psyr_1041 0.81 -0.7 1,176,910 + Psyr_1041 0.82 -0.0 1,176,911 - Psyr_1041 0.83 -0.4 1,176,930 + Psyr_1041 0.85 +4.1 1,176,931 - Psyr_1041 0.85 -1.9
Or see this region's nucleotide sequence