Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1030

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1029 and Psyr_1030 overlap by 4 nucleotidesPsyr_1030 and Psyr_1031 are separated by 12 nucleotides Psyr_1029: Psyr_1029 - Peptidase aspartic, active site, at 1,159,307 to 1,161,271 _1029 Psyr_1030: Psyr_1030 - bacteriophage N4 adsorption protein B, at 1,161,268 to 1,163,388 _1030 Psyr_1031: Psyr_1031 - conserved hypothetical protein, at 1,163,401 to 1,165,617 _1031 Position (kb) 1161 1162 1163 1164Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1160.269 kb on + strand, within Psyr_1029at 1160.310 kb on + strand, within Psyr_1029at 1160.310 kb on + strand, within Psyr_1029at 1160.310 kb on + strand, within Psyr_1029at 1160.311 kb on - strand, within Psyr_1029at 1160.311 kb on - strand, within Psyr_1029at 1160.311 kb on - strand, within Psyr_1029at 1160.406 kb on + strand, within Psyr_1029at 1160.407 kb on - strand, within Psyr_1029at 1160.583 kb on + strand, within Psyr_1029at 1160.584 kb on - strand, within Psyr_1029at 1160.615 kb on + strand, within Psyr_1029at 1160.976 kb on + strand, within Psyr_1029at 1161.000 kb on + strand, within Psyr_1029at 1161.000 kb on + strand, within Psyr_1029at 1161.000 kb on + strand, within Psyr_1029at 1161.000 kb on + strand, within Psyr_1029at 1161.001 kb on - strand, within Psyr_1029at 1161.001 kb on - strand, within Psyr_1029at 1161.027 kb on + strand, within Psyr_1029at 1161.027 kb on + strand, within Psyr_1029at 1161.028 kb on - strand, within Psyr_1029at 1161.049 kb on + strand, within Psyr_1029at 1161.049 kb on + strand, within Psyr_1029at 1161.049 kb on + strand, within Psyr_1029at 1161.049 kb on + strand, within Psyr_1029at 1161.050 kb on - strand, within Psyr_1029at 1161.050 kb on - strand, within Psyr_1029at 1161.050 kb on - strand, within Psyr_1029at 1161.123 kb on + strandat 1161.124 kb on - strandat 1161.138 kb on + strandat 1161.138 kb on + strandat 1161.139 kb on - strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.147 kb on + strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.148 kb on - strandat 1161.168 kb on + strandat 1161.169 kb on - strandat 1161.372 kb on - strandat 1162.115 kb on + strand, within Psyr_1030at 1162.115 kb on + strand, within Psyr_1030at 1162.115 kb on + strand, within Psyr_1030at 1162.115 kb on + strand, within Psyr_1030at 1162.116 kb on - strand, within Psyr_1030at 1162.212 kb on + strand, within Psyr_1030at 1162.272 kb on - strand, within Psyr_1030at 1162.329 kb on - strand, within Psyr_1030at 1162.478 kb on + strand, within Psyr_1030at 1162.532 kb on - strand, within Psyr_1030at 1162.553 kb on + strand, within Psyr_1030at 1162.580 kb on + strand, within Psyr_1030at 1162.580 kb on + strand, within Psyr_1030at 1162.581 kb on - strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.751 kb on + strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.752 kb on - strand, within Psyr_1030at 1162.833 kb on - strand, within Psyr_1030at 1162.833 kb on - strand, within Psyr_1030at 1162.833 kb on - strand, within Psyr_1030at 1162.833 kb on - strand, within Psyr_1030at 1162.888 kb on - strand, within Psyr_1030at 1162.903 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.063 kb on + strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.064 kb on - strand, within Psyr_1030at 1163.084 kb on + strand, within Psyr_1030at 1163.084 kb on + strand, within Psyr_1030at 1163.084 kb on + strand, within Psyr_1030at 1163.084 kb on + strand, within Psyr_1030at 1163.085 kb on - strand, within Psyr_1030at 1163.085 kb on - strand, within Psyr_1030at 1163.085 kb on - strand, within Psyr_1030at 1163.085 kb on - strand, within Psyr_1030at 1163.085 kb on - strand, within Psyr_1030at 1163.141 kb on + strand, within Psyr_1030at 1163.142 kb on - strand, within Psyr_1030at 1163.246 kb on + strandat 1163.264 kb on + strandat 1163.271 kb on + strandat 1163.272 kb on - strandat 1163.348 kb on + strandat 1163.348 kb on + strandat 1163.348 kb on + strandat 1163.348 kb on + strandat 1163.348 kb on + strandat 1163.349 kb on - strandat 1163.349 kb on - strandat 1163.351 kb on + strandat 1163.351 kb on + strandat 1163.351 kb on + strandat 1163.351 kb on + strandat 1163.352 kb on - strandat 1163.352 kb on - strandat 1163.375 kb on + strandat 1163.455 kb on + strandat 1163.751 kb on + strand, within Psyr_1031at 1163.752 kb on - strand, within Psyr_1031at 1164.165 kb on - strand, within Psyr_1031at 1164.165 kb on - strand, within Psyr_1031at 1164.329 kb on + strand, within Psyr_1031

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,160,269 + Psyr_1029 0.49 -0.4
1,160,310 + Psyr_1029 0.51 +0.1
1,160,310 + Psyr_1029 0.51 -0.0
1,160,310 + Psyr_1029 0.51 +1.1
1,160,311 - Psyr_1029 0.51 +3.5
1,160,311 - Psyr_1029 0.51 -0.5
1,160,311 - Psyr_1029 0.51 +4.2
1,160,406 + Psyr_1029 0.56 +2.6
1,160,407 - Psyr_1029 0.56 -1.6
1,160,583 + Psyr_1029 0.65 -0.9
1,160,584 - Psyr_1029 0.65 -0.3
1,160,615 + Psyr_1029 0.67 +2.0
1,160,976 + Psyr_1029 0.85 +4.2
1,161,000 + Psyr_1029 0.86 -0.4
1,161,000 + Psyr_1029 0.86 -3.2
1,161,000 + Psyr_1029 0.86 -0.1
1,161,000 + Psyr_1029 0.86 -0.5
1,161,001 - Psyr_1029 0.86 -2.5
1,161,001 - Psyr_1029 0.86 -1.5
1,161,027 + Psyr_1029 0.88 -0.4
1,161,027 + Psyr_1029 0.88 +0.8
1,161,028 - Psyr_1029 0.88 +1.1
1,161,049 + Psyr_1029 0.89 -1.2
1,161,049 + Psyr_1029 0.89 -2.9
1,161,049 + Psyr_1029 0.89 -3.0
1,161,049 + Psyr_1029 0.89 -0.2
1,161,050 - Psyr_1029 0.89 -0.6
1,161,050 - Psyr_1029 0.89 +0.7
1,161,050 - Psyr_1029 0.89 +0.9
1,161,123 + -0.1
1,161,124 - -2.0
1,161,138 + -1.9
1,161,138 + +2.6
1,161,139 - +4.0
1,161,147 + -0.4
1,161,147 + +3.0
1,161,147 + +1.3
1,161,147 + -0.8
1,161,147 + +4.0
1,161,147 + -1.8
1,161,147 + -1.0
1,161,147 + -2.5
1,161,147 + -4.1
1,161,147 + +3.7
1,161,148 - +2.3
1,161,148 - -0.0
1,161,148 - -1.6
1,161,148 - +2.0
1,161,148 - +2.6
1,161,148 - -1.3
1,161,148 - -0.2
1,161,148 - +2.3
1,161,148 - -1.6
1,161,148 - -1.4
1,161,148 - -3.0
1,161,168 + -0.9
1,161,169 - -0.0
1,161,372 - -1.1
1,162,115 + Psyr_1030 0.40 +2.0
1,162,115 + Psyr_1030 0.40 +0.6
1,162,115 + Psyr_1030 0.40 -0.5
1,162,115 + Psyr_1030 0.40 -1.5
1,162,116 - Psyr_1030 0.40 -2.3
1,162,212 + Psyr_1030 0.45 -1.0
1,162,272 - Psyr_1030 0.47 +2.3
1,162,329 - Psyr_1030 0.50 +1.6
1,162,478 + Psyr_1030 0.57 +2.0
1,162,532 - Psyr_1030 0.60 -1.8
1,162,553 + Psyr_1030 0.61 +0.4
1,162,580 + Psyr_1030 0.62 -1.6
1,162,580 + Psyr_1030 0.62 -0.3
1,162,581 - Psyr_1030 0.62 +0.8
1,162,751 + Psyr_1030 0.70 -1.1
1,162,751 + Psyr_1030 0.70 -1.9
1,162,751 + Psyr_1030 0.70 +4.2
1,162,751 + Psyr_1030 0.70 -0.9
1,162,751 + Psyr_1030 0.70 +2.0
1,162,751 + Psyr_1030 0.70 -2.0
1,162,751 + Psyr_1030 0.70 +3.2
1,162,751 + Psyr_1030 0.70 -0.5
1,162,752 - Psyr_1030 0.70 -0.4
1,162,752 - Psyr_1030 0.70 +2.6
1,162,752 - Psyr_1030 0.70 -0.7
1,162,752 - Psyr_1030 0.70 -1.7
1,162,752 - Psyr_1030 0.70 -1.3
1,162,752 - Psyr_1030 0.70 -0.5
1,162,752 - Psyr_1030 0.70 -1.9
1,162,752 - Psyr_1030 0.70 +0.8
1,162,752 - Psyr_1030 0.70 +3.2
1,162,752 - Psyr_1030 0.70 -1.1
1,162,833 - Psyr_1030 0.74 -0.0
1,162,833 - Psyr_1030 0.74 -0.4
1,162,833 - Psyr_1030 0.74 +2.8
1,162,833 - Psyr_1030 0.74 -0.2
1,162,888 - Psyr_1030 0.76 +1.6
1,162,903 + Psyr_1030 0.77 -0.3
1,163,063 + Psyr_1030 0.85 +4.2
1,163,063 + Psyr_1030 0.85 -2.1
1,163,063 + Psyr_1030 0.85 -2.0
1,163,063 + Psyr_1030 0.85 -0.2
1,163,063 + Psyr_1030 0.85 +3.7
1,163,063 + Psyr_1030 0.85 -1.5
1,163,063 + Psyr_1030 0.85 -1.1
1,163,063 + Psyr_1030 0.85 +2.3
1,163,064 - Psyr_1030 0.85 -2.1
1,163,064 - Psyr_1030 0.85 +1.0
1,163,064 - Psyr_1030 0.85 -2.5
1,163,064 - Psyr_1030 0.85 -1.0
1,163,064 - Psyr_1030 0.85 -4.1
1,163,064 - Psyr_1030 0.85 -0.1
1,163,064 - Psyr_1030 0.85 -1.1
1,163,064 - Psyr_1030 0.85 -3.6
1,163,064 - Psyr_1030 0.85 -0.0
1,163,064 - Psyr_1030 0.85 -0.0
1,163,084 + Psyr_1030 0.86 -3.0
1,163,084 + Psyr_1030 0.86 +1.0
1,163,084 + Psyr_1030 0.86 +1.7
1,163,084 + Psyr_1030 0.86 +2.6
1,163,085 - Psyr_1030 0.86 -3.7
1,163,085 - Psyr_1030 0.86 -1.5
1,163,085 - Psyr_1030 0.86 -0.7
1,163,085 - Psyr_1030 0.86 -1.0
1,163,085 - Psyr_1030 0.86 +2.0
1,163,141 + Psyr_1030 0.88 +2.6
1,163,142 - Psyr_1030 0.88 -0.1
1,163,246 + +4.4
1,163,264 + +4.2
1,163,271 + -0.6
1,163,272 - +0.5
1,163,348 + +2.8
1,163,348 + -3.2
1,163,348 + +3.7
1,163,348 + +2.3
1,163,348 + -1.2
1,163,349 - -2.0
1,163,349 - -0.2
1,163,351 + +1.4
1,163,351 + +1.6
1,163,351 + +2.3
1,163,351 + +1.6
1,163,352 - +3.5
1,163,352 - -2.3
1,163,375 + -0.9
1,163,455 + +3.3
1,163,751 + Psyr_1031 0.16 -1.5
1,163,752 - Psyr_1031 0.16 +0.2
1,164,165 - Psyr_1031 0.34 +2.3
1,164,165 - Psyr_1031 0.34 -0.0
1,164,329 + Psyr_1031 0.42 +4.2

Or see this region's nucleotide sequence