Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1025

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1023 and Psyr_1024 are separated by 206 nucleotidesPsyr_1024 and Psyr_1025 are separated by 111 nucleotidesPsyr_1025 and Psyr_1026 are separated by 213 nucleotides Psyr_1023: Psyr_1023 - conserved hypothetical protein, at 1,154,230 to 1,154,835 _1023 Psyr_1024: Psyr_1024 - Flavodoxin/nitric oxide synthase, at 1,155,042 to 1,155,494 _1024 Psyr_1025: Psyr_1025 - Short-chain dehydrogenase/reductase SDR, at 1,155,606 to 1,156,517 _1025 Psyr_1026: Psyr_1026 - hypothetical protein, at 1,156,731 to 1,157,288 _1026 Position (kb) 1155 1156 1157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1154.749 kb on - strand, within Psyr_1023at 1154.749 kb on - strand, within Psyr_1023at 1154.758 kb on + strand, within Psyr_1023at 1154.758 kb on + strand, within Psyr_1023at 1154.758 kb on + strand, within Psyr_1023at 1154.758 kb on + strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.759 kb on - strand, within Psyr_1023at 1154.998 kb on + strandat 1154.998 kb on + strandat 1154.998 kb on + strandat 1155.005 kb on + strandat 1155.005 kb on + strandat 1155.006 kb on - strandat 1155.156 kb on - strand, within Psyr_1024at 1155.156 kb on - strand, within Psyr_1024at 1155.252 kb on + strand, within Psyr_1024at 1155.483 kb on + strandat 1155.484 kb on - strandat 1155.484 kb on - strandat 1155.511 kb on + strandat 1155.511 kb on + strandat 1155.619 kb on + strandat 1155.619 kb on + strandat 1155.619 kb on + strandat 1155.814 kb on + strand, within Psyr_1025at 1155.987 kb on + strand, within Psyr_1025at 1155.987 kb on + strand, within Psyr_1025at 1155.987 kb on + strand, within Psyr_1025at 1155.987 kb on + strand, within Psyr_1025at 1155.988 kb on - strand, within Psyr_1025at 1155.988 kb on - strand, within Psyr_1025at 1155.988 kb on - strand, within Psyr_1025at 1155.988 kb on - strand, within Psyr_1025at 1155.988 kb on - strand, within Psyr_1025at 1155.988 kb on - strand, within Psyr_1025at 1155.989 kb on + strand, within Psyr_1025at 1155.989 kb on + strand, within Psyr_1025at 1156.015 kb on - strand, within Psyr_1025at 1156.071 kb on + strand, within Psyr_1025at 1156.072 kb on - strand, within Psyr_1025at 1156.072 kb on - strand, within Psyr_1025at 1156.072 kb on - strand, within Psyr_1025at 1156.095 kb on + strand, within Psyr_1025at 1156.095 kb on + strand, within Psyr_1025at 1156.095 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.275 kb on + strand, within Psyr_1025at 1156.276 kb on - strand, within Psyr_1025at 1156.276 kb on - strand, within Psyr_1025at 1156.276 kb on - strand, within Psyr_1025at 1156.276 kb on - strand, within Psyr_1025at 1156.276 kb on - strand, within Psyr_1025at 1156.506 kb on + strandat 1156.506 kb on + strandat 1156.506 kb on + strandat 1156.507 kb on - strandat 1156.507 kb on - strandat 1156.507 kb on - strandat 1156.507 kb on - strandat 1156.507 kb on - strandat 1156.515 kb on + strandat 1156.516 kb on - strandat 1156.516 kb on - strandat 1156.516 kb on - strandat 1156.592 kb on + strandat 1156.592 kb on + strandat 1156.593 kb on - strandat 1156.593 kb on - strandat 1156.593 kb on - strandat 1156.593 kb on - strandat 1156.593 kb on - strandat 1156.616 kb on + strandat 1156.616 kb on + strandat 1156.616 kb on + strandat 1156.616 kb on + strandat 1156.620 kb on + strandat 1156.620 kb on + strandat 1156.620 kb on + strandat 1156.620 kb on + strandat 1156.620 kb on + strandat 1156.620 kb on + strandat 1156.620 kb on + strandat 1156.620 kb on + strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.621 kb on - strandat 1156.643 kb on - strandat 1156.643 kb on - strandat 1156.669 kb on + strandat 1156.672 kb on + strandat 1156.672 kb on + strandat 1156.673 kb on - strandat 1156.695 kb on + strandat 1156.716 kb on + strandat 1156.716 kb on + strandat 1156.717 kb on - strandat 1156.717 kb on - strandat 1156.745 kb on - strandat 1156.927 kb on + strand, within Psyr_1026at 1156.927 kb on + strand, within Psyr_1026at 1156.928 kb on - strand, within Psyr_1026at 1156.928 kb on - strand, within Psyr_1026at 1156.965 kb on + strand, within Psyr_1026at 1156.986 kb on - strand, within Psyr_1026at 1157.157 kb on + strand, within Psyr_1026at 1157.157 kb on + strand, within Psyr_1026at 1157.157 kb on + strand, within Psyr_1026at 1157.157 kb on + strand, within Psyr_1026at 1157.157 kb on + strand, within Psyr_1026at 1157.157 kb on + strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.158 kb on - strand, within Psyr_1026at 1157.217 kb on + strand, within Psyr_1026at 1157.217 kb on + strand, within Psyr_1026at 1157.217 kb on + strand, within Psyr_1026at 1157.217 kb on + strand, within Psyr_1026at 1157.217 kb on + strand, within Psyr_1026at 1157.218 kb on - strand, within Psyr_1026

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,154,749 - Psyr_1023 0.86 -0.2
1,154,749 - Psyr_1023 0.86 -1.4
1,154,758 + Psyr_1023 0.87 +1.0
1,154,758 + Psyr_1023 0.87 +2.3
1,154,758 + Psyr_1023 0.87 +2.3
1,154,758 + Psyr_1023 0.87 -0.1
1,154,759 - Psyr_1023 0.87 -0.3
1,154,759 - Psyr_1023 0.87 -1.6
1,154,759 - Psyr_1023 0.87 +0.9
1,154,759 - Psyr_1023 0.87 +0.1
1,154,759 - Psyr_1023 0.87 -2.7
1,154,759 - Psyr_1023 0.87 +1.0
1,154,759 - Psyr_1023 0.87 -0.6
1,154,759 - Psyr_1023 0.87 +0.0
1,154,759 - Psyr_1023 0.87 +1.6
1,154,998 + +0.2
1,154,998 + +2.0
1,154,998 + -0.1
1,155,005 + -0.6
1,155,005 + -2.7
1,155,006 - -1.6
1,155,156 - Psyr_1024 0.25 -1.0
1,155,156 - Psyr_1024 0.25 -1.2
1,155,252 + Psyr_1024 0.46 -0.8
1,155,483 + -0.8
1,155,484 - +2.6
1,155,484 - +4.1
1,155,511 + -1.6
1,155,511 + +3.5
1,155,619 + -0.9
1,155,619 + +1.6
1,155,619 + -1.5
1,155,814 + Psyr_1025 0.23 -3.0
1,155,987 + Psyr_1025 0.42 -0.1
1,155,987 + Psyr_1025 0.42 +1.6
1,155,987 + Psyr_1025 0.42 +4.2
1,155,987 + Psyr_1025 0.42 +3.9
1,155,988 - Psyr_1025 0.42 +1.4
1,155,988 - Psyr_1025 0.42 -0.5
1,155,988 - Psyr_1025 0.42 -0.7
1,155,988 - Psyr_1025 0.42 +1.6
1,155,988 - Psyr_1025 0.42 +4.1
1,155,988 - Psyr_1025 0.42 +0.9
1,155,989 + Psyr_1025 0.42 +2.0
1,155,989 + Psyr_1025 0.42 +2.0
1,156,015 - Psyr_1025 0.45 -1.7
1,156,071 + Psyr_1025 0.51 -0.1
1,156,072 - Psyr_1025 0.51 -2.0
1,156,072 - Psyr_1025 0.51 -1.2
1,156,072 - Psyr_1025 0.51 +3.2
1,156,095 + Psyr_1025 0.54 -1.0
1,156,095 + Psyr_1025 0.54 +3.3
1,156,095 + Psyr_1025 0.54 +2.7
1,156,275 + Psyr_1025 0.73 +2.0
1,156,275 + Psyr_1025 0.73 -2.0
1,156,275 + Psyr_1025 0.73 -2.5
1,156,275 + Psyr_1025 0.73 +0.0
1,156,275 + Psyr_1025 0.73 -0.3
1,156,275 + Psyr_1025 0.73 +2.0
1,156,275 + Psyr_1025 0.73 -0.5
1,156,275 + Psyr_1025 0.73 +2.0
1,156,275 + Psyr_1025 0.73 +3.2
1,156,276 - Psyr_1025 0.73 +3.0
1,156,276 - Psyr_1025 0.73 -2.1
1,156,276 - Psyr_1025 0.73 +0.0
1,156,276 - Psyr_1025 0.73 +1.6
1,156,276 - Psyr_1025 0.73 +1.4
1,156,506 + +3.2
1,156,506 + -4.1
1,156,506 + -0.3
1,156,507 - -2.0
1,156,507 - +3.5
1,156,507 - +1.3
1,156,507 - +0.5
1,156,507 - -3.0
1,156,515 + -0.9
1,156,516 - -1.0
1,156,516 - -1.8
1,156,516 - +2.8
1,156,592 + -1.4
1,156,592 + -0.8
1,156,593 - -0.1
1,156,593 - +3.9
1,156,593 - +1.3
1,156,593 - -2.8
1,156,593 - +0.7
1,156,616 + +3.7
1,156,616 + +2.3
1,156,616 + +0.1
1,156,616 + +3.0
1,156,620 + +1.6
1,156,620 + +3.0
1,156,620 + -1.5
1,156,620 + +1.6
1,156,620 + -0.3
1,156,620 + +2.1
1,156,620 + -1.1
1,156,620 + +2.0
1,156,621 - -1.3
1,156,621 - +1.1
1,156,621 - +0.0
1,156,621 - -1.8
1,156,621 - +0.0
1,156,621 - +1.4
1,156,621 - +2.3
1,156,621 - -2.5
1,156,621 - +2.3
1,156,621 - +0.5
1,156,643 - -0.4
1,156,643 - +0.0
1,156,669 + +3.5
1,156,672 + -2.3
1,156,672 + -0.1
1,156,673 - +0.6
1,156,695 + -1.0
1,156,716 + +4.0
1,156,716 + +0.0
1,156,717 - -0.6
1,156,717 - +1.6
1,156,745 - +3.0
1,156,927 + Psyr_1026 0.35 +2.8
1,156,927 + Psyr_1026 0.35 +1.6
1,156,928 - Psyr_1026 0.35 -0.9
1,156,928 - Psyr_1026 0.35 +0.2
1,156,965 + Psyr_1026 0.42 -1.1
1,156,986 - Psyr_1026 0.46 +2.6
1,157,157 + Psyr_1026 0.76 +0.9
1,157,157 + Psyr_1026 0.76 +1.6
1,157,157 + Psyr_1026 0.76 +1.4
1,157,157 + Psyr_1026 0.76 +2.6
1,157,157 + Psyr_1026 0.76 -1.9
1,157,157 + Psyr_1026 0.76 +3.0
1,157,158 - Psyr_1026 0.77 -2.7
1,157,158 - Psyr_1026 0.77 +4.1
1,157,158 - Psyr_1026 0.77 -2.0
1,157,158 - Psyr_1026 0.77 +0.0
1,157,158 - Psyr_1026 0.77 +2.6
1,157,158 - Psyr_1026 0.77 +3.0
1,157,158 - Psyr_1026 0.77 +2.6
1,157,158 - Psyr_1026 0.77 +3.9
1,157,158 - Psyr_1026 0.77 -3.0
1,157,217 + Psyr_1026 0.87 -2.9
1,157,217 + Psyr_1026 0.87 +0.2
1,157,217 + Psyr_1026 0.87 +0.3
1,157,217 + Psyr_1026 0.87 +3.9
1,157,217 + Psyr_1026 0.87 +3.2
1,157,218 - Psyr_1026 0.87 +3.3

Or see this region's nucleotide sequence