Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1001

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1000 and Psyr_1001 are separated by 213 nucleotidesPsyr_1001 and Psyr_1002 overlap by 4 nucleotides Psyr_1000: Psyr_1000 - transcriptional regulator, TetR family, at 1,133,764 to 1,134,492 _1000 Psyr_1001: Psyr_1001 - nucleoside-binding protein, at 1,134,706 to 1,135,797 _1001 Psyr_1002: Psyr_1002 - nucleoside ABC transporter ATP-binding protein, at 1,135,794 to 1,137,305 _1002 Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1133.937 kb on - strand, within Psyr_1000at 1134.017 kb on - strand, within Psyr_1000at 1134.019 kb on + strand, within Psyr_1000at 1134.019 kb on + strand, within Psyr_1000at 1134.020 kb on - strand, within Psyr_1000at 1134.020 kb on - strand, within Psyr_1000at 1134.020 kb on - strand, within Psyr_1000at 1134.020 kb on - strand, within Psyr_1000at 1134.020 kb on - strand, within Psyr_1000at 1134.020 kb on - strand, within Psyr_1000at 1134.020 kb on - strand, within Psyr_1000at 1134.043 kb on + strand, within Psyr_1000at 1134.043 kb on + strand, within Psyr_1000at 1134.075 kb on - strand, within Psyr_1000at 1134.075 kb on - strand, within Psyr_1000at 1134.136 kb on + strand, within Psyr_1000at 1134.136 kb on + strand, within Psyr_1000at 1134.136 kb on + strand, within Psyr_1000at 1134.136 kb on + strand, within Psyr_1000at 1134.137 kb on - strand, within Psyr_1000at 1134.137 kb on - strand, within Psyr_1000at 1134.339 kb on + strand, within Psyr_1000at 1134.340 kb on - strand, within Psyr_1000at 1134.655 kb on + strandat 1134.688 kb on - strandat 1134.688 kb on - strandat 1134.688 kb on - strandat 1134.705 kb on + strandat 1134.705 kb on + strandat 1134.705 kb on + strandat 1134.705 kb on + strandat 1134.705 kb on + strandat 1134.705 kb on + strandat 1134.705 kb on + strandat 1134.706 kb on - strandat 1134.706 kb on - strandat 1134.706 kb on - strandat 1134.706 kb on - strandat 1134.706 kb on - strandat 1134.706 kb on - strandat 1134.709 kb on + strandat 1134.709 kb on + strandat 1134.709 kb on + strandat 1134.709 kb on + strandat 1134.709 kb on + strandat 1134.710 kb on - strandat 1134.710 kb on - strandat 1134.710 kb on - strandat 1134.710 kb on - strandat 1134.710 kb on - strandat 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.820 kb on + strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.821 kb on - strand, within Psyr_1001at 1134.823 kb on - strand, within Psyr_1001at 1134.911 kb on - strand, within Psyr_1001at 1134.911 kb on - strand, within Psyr_1001at 1135.010 kb on - strand, within Psyr_1001at 1135.042 kb on + strand, within Psyr_1001at 1135.106 kb on - strand, within Psyr_1001at 1135.113 kb on + strand, within Psyr_1001at 1135.117 kb on + strand, within Psyr_1001at 1135.117 kb on + strand, within Psyr_1001at 1135.228 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.279 kb on + strand, within Psyr_1001at 1135.280 kb on - strand, within Psyr_1001at 1135.280 kb on - strand, within Psyr_1001at 1135.678 kb on + strand, within Psyr_1001at 1135.678 kb on + strand, within Psyr_1001at 1135.678 kb on + strand, within Psyr_1001at 1135.678 kb on + strand, within Psyr_1001at 1135.678 kb on + strand, within Psyr_1001at 1135.679 kb on - strand, within Psyr_1001at 1135.679 kb on - strand, within Psyr_1001at 1135.959 kb on + strand, within Psyr_1002at 1135.960 kb on - strand, within Psyr_1002at 1136.652 kb on + strand, within Psyr_1002

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
remove
1,133,937 - Psyr_1000 0.24 -1.0
1,134,017 - Psyr_1000 0.35 +2.6
1,134,019 + Psyr_1000 0.35 -0.8
1,134,019 + Psyr_1000 0.35 -1.4
1,134,020 - Psyr_1000 0.35 -0.7
1,134,020 - Psyr_1000 0.35 +0.0
1,134,020 - Psyr_1000 0.35 +0.0
1,134,020 - Psyr_1000 0.35 -0.6
1,134,020 - Psyr_1000 0.35 -1.8
1,134,020 - Psyr_1000 0.35 +4.1
1,134,020 - Psyr_1000 0.35 +4.7
1,134,043 + Psyr_1000 0.38 -0.8
1,134,043 + Psyr_1000 0.38 -1.0
1,134,075 - Psyr_1000 0.43 +4.0
1,134,075 - Psyr_1000 0.43 -0.8
1,134,136 + Psyr_1000 0.51 -0.6
1,134,136 + Psyr_1000 0.51 +4.1
1,134,136 + Psyr_1000 0.51 +0.4
1,134,136 + Psyr_1000 0.51 -2.0
1,134,137 - Psyr_1000 0.51 +2.3
1,134,137 - Psyr_1000 0.51 -4.4
1,134,339 + Psyr_1000 0.79 -0.8
1,134,340 - Psyr_1000 0.79 +1.1
1,134,655 + +0.3
1,134,688 - +0.9
1,134,688 - -1.8
1,134,688 - +1.0
1,134,705 + -0.1
1,134,705 + -0.5
1,134,705 + +0.5
1,134,705 + -1.9
1,134,705 + +2.3
1,134,705 + +2.0
1,134,705 + -0.4
1,134,706 - +0.0
1,134,706 - -0.4
1,134,706 - -0.7
1,134,706 - -1.2
1,134,706 - +2.6
1,134,706 - -1.6
1,134,709 + +3.9
1,134,709 + +4.1
1,134,709 + +2.0
1,134,709 + +0.9
1,134,709 + +3.2
1,134,710 - +4.5
1,134,710 - +2.3
1,134,710 - -1.0
1,134,710 - -1.4
1,134,710 - -3.0
1,134,820 + Psyr_1001 0.10 +0.0
1,134,820 + Psyr_1001 0.10 -1.6
1,134,820 + Psyr_1001 0.10 +3.3
1,134,820 + Psyr_1001 0.10 -0.8
1,134,820 + Psyr_1001 0.10 +1.1
1,134,820 + Psyr_1001 0.10 +3.6
1,134,820 + Psyr_1001 0.10 -1.0
1,134,820 + Psyr_1001 0.10 -4.1
1,134,820 + Psyr_1001 0.10 +4.4
1,134,820 + Psyr_1001 0.10 -0.8
1,134,820 + Psyr_1001 0.10 -1.3
1,134,820 + Psyr_1001 0.10 +3.3
1,134,820 + Psyr_1001 0.10 +2.8
1,134,821 - Psyr_1001 0.11 -2.1
1,134,821 - Psyr_1001 0.11 -1.5
1,134,821 - Psyr_1001 0.11 +4.0
1,134,821 - Psyr_1001 0.11 +2.1
1,134,821 - Psyr_1001 0.11 -2.2
1,134,821 - Psyr_1001 0.11 +2.3
1,134,821 - Psyr_1001 0.11 -0.8
1,134,821 - Psyr_1001 0.11 +0.0
1,134,821 - Psyr_1001 0.11 +0.7
1,134,821 - Psyr_1001 0.11 +3.8
1,134,821 - Psyr_1001 0.11 +0.1
1,134,821 - Psyr_1001 0.11 +0.4
1,134,821 - Psyr_1001 0.11 -0.4
1,134,823 - Psyr_1001 0.11 -0.5
1,134,911 - Psyr_1001 0.19 -1.7
1,134,911 - Psyr_1001 0.19 +3.0
1,135,010 - Psyr_1001 0.28 +3.2
1,135,042 + Psyr_1001 0.31 +0.3
1,135,106 - Psyr_1001 0.37 +1.0
1,135,113 + Psyr_1001 0.37 -0.1
1,135,117 + Psyr_1001 0.38 +2.8
1,135,117 + Psyr_1001 0.38 +1.3
1,135,228 + Psyr_1001 0.48 +3.8
1,135,279 + Psyr_1001 0.52 -0.5
1,135,279 + Psyr_1001 0.52 +2.8
1,135,279 + Psyr_1001 0.52 +4.3
1,135,279 + Psyr_1001 0.52 -1.7
1,135,279 + Psyr_1001 0.52 +2.0
1,135,279 + Psyr_1001 0.52 -1.0
1,135,279 + Psyr_1001 0.52 +1.0
1,135,280 - Psyr_1001 0.53 +2.8
1,135,280 - Psyr_1001 0.53 -2.1
1,135,678 + Psyr_1001 0.89 +4.3
1,135,678 + Psyr_1001 0.89 +4.2
1,135,678 + Psyr_1001 0.89 +1.0
1,135,678 + Psyr_1001 0.89 -1.1
1,135,678 + Psyr_1001 0.89 +3.7
1,135,679 - Psyr_1001 0.89 -0.1
1,135,679 - Psyr_1001 0.89 -1.2
1,135,959 + Psyr_1002 0.11 +4.3
1,135,960 - Psyr_1002 0.11 +2.3
1,136,652 + Psyr_1002 0.57 -0.8

Or see this region's nucleotide sequence