Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0989

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0988 and Psyr_0989 are separated by 380 nucleotidesPsyr_0989 and Psyr_0990 are separated by 169 nucleotides Psyr_0988: Psyr_0988 - Integrase, catalytic region, at 1,118,184 to 1,118,966 _0988 Psyr_0989: Psyr_0989 - Lysine exporter protein (LYSE/YGGA), at 1,119,347 to 1,119,979 _0989 Psyr_0990: Psyr_0990 - AMP-dependent synthetase and ligase, at 1,120,149 to 1,121,831 _0990 Position (kb) 1119 1120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.973 kb on + strandat 1118.973 kb on + strandat 1118.973 kb on + strandat 1118.973 kb on + strandat 1119.244 kb on + strandat 1119.244 kb on + strandat 1119.245 kb on - strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.249 kb on - strandat 1119.306 kb on + strandat 1119.306 kb on + strandat 1119.350 kb on + strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.591 kb on - strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.695 kb on + strandat 1119.695 kb on + strand, within Psyr_0989at 1119.695 kb on + strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.815 kb on + strand, within Psyr_0989at 1120.109 kb on + strandat 1120.110 kb on - strandat 1120.110 kb on - strandat 1120.110 kb on - strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.260 kb on + strandat 1120.260 kb on + strandat 1120.260 kb on + strandat 1120.261 kb on - strandat 1120.278 kb on + strandat 1120.284 kb on + strandat 1120.285 kb on - strandat 1120.306 kb on + strandat 1120.306 kb on + strandat 1120.307 kb on - strandat 1120.324 kb on + strand, within Psyr_0990at 1120.324 kb on + strand, within Psyr_0990at 1120.324 kb on + strand, within Psyr_0990at 1120.389 kb on + strand, within Psyr_0990at 1120.533 kb on + strand, within Psyr_0990at 1120.533 kb on + strand, within Psyr_0990at 1120.533 kb on + strand, within Psyr_0990at 1120.534 kb on - strand, within Psyr_0990at 1120.534 kb on - strand, within Psyr_0990at 1120.621 kb on + strand, within Psyr_0990at 1120.621 kb on + strand, within Psyr_0990at 1120.622 kb on - strand, within Psyr_0990at 1120.622 kb on - strand, within Psyr_0990at 1120.622 kb on - strand, within Psyr_0990at 1120.632 kb on + strand, within Psyr_0990at 1120.633 kb on - strand, within Psyr_0990at 1120.633 kb on - strand, within Psyr_0990at 1120.665 kb on + strand, within Psyr_0990at 1120.666 kb on - strand, within Psyr_0990at 1120.666 kb on - strand, within Psyr_0990at 1120.710 kb on + strand, within Psyr_0990at 1120.710 kb on + strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.747 kb on - strand, within Psyr_0990at 1120.747 kb on - strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.923 kb on + strand, within Psyr_0990

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,118,971 + +2.6
1,118,971 + +3.4
1,118,971 + +1.0
1,118,971 + +2.0
1,118,971 + +3.4
1,118,971 + -0.6
1,118,971 + +0.4
1,118,971 + -1.6
1,118,973 + -1.7
1,118,973 + +3.5
1,118,973 + -1.0
1,118,973 + +1.3
1,119,244 + -0.7
1,119,244 + +3.2
1,119,245 - +3.2
1,119,248 + +4.0
1,119,248 + +2.4
1,119,248 + +2.0
1,119,248 + +3.6
1,119,248 + -2.3
1,119,249 - +2.8
1,119,306 + -3.4
1,119,306 + +3.2
1,119,350 + +0.0
1,119,351 - +3.7
1,119,351 - -2.7
1,119,351 - +0.3
1,119,351 - -0.5
1,119,591 - Psyr_0989 0.39 +2.8
1,119,594 + Psyr_0989 0.39 +1.4
1,119,594 + Psyr_0989 0.39 +1.6
1,119,594 + Psyr_0989 0.39 +4.7
1,119,594 + Psyr_0989 0.39 +0.2
1,119,594 + Psyr_0989 0.39 -1.5
1,119,594 + Psyr_0989 0.39 +2.0
1,119,595 - Psyr_0989 0.39 +1.6
1,119,595 - Psyr_0989 0.39 -0.5
1,119,595 - Psyr_0989 0.39 +0.0
1,119,595 - Psyr_0989 0.39 -0.3
1,119,595 - Psyr_0989 0.39 +0.7
1,119,595 - Psyr_0989 0.39 +0.0
1,119,595 - Psyr_0989 0.39 -1.7
1,119,595 - Psyr_0989 0.39 -0.2
1,119,595 - Psyr_0989 0.39 +0.0
1,119,595 - Psyr_0989 0.39 +0.0
1,119,595 - Psyr_0989 0.39 +3.0
1,119,599 + Psyr_0989 0.40 +0.2
1,119,599 + Psyr_0989 0.40 +0.7
1,119,599 + Psyr_0989 0.40 +1.6
1,119,600 - Psyr_0989 0.40 +0.0
1,119,600 - Psyr_0989 0.40 +0.2
1,119,600 - Psyr_0989 0.40 +0.3
1,119,600 - Psyr_0989 0.40 +0.4
1,119,600 - Psyr_0989 0.40 +2.0
1,119,600 - Psyr_0989 0.40 +0.0
1,119,600 - Psyr_0989 0.40 -0.3
1,119,695 + -1.6
1,119,695 + Psyr_0989 0.55 +3.8
1,119,695 + Psyr_0989 0.55 -1.6
1,119,696 - Psyr_0989 0.55 -3.4
1,119,696 - Psyr_0989 0.55 +3.4
1,119,696 - Psyr_0989 0.55 +0.2
1,119,696 - Psyr_0989 0.55 -0.0
1,119,696 - Psyr_0989 0.55 +2.4
1,119,815 + Psyr_0989 0.74 +3.8
1,120,109 + -2.0
1,120,110 - +2.4
1,120,110 - +4.4
1,120,110 - -0.9
1,120,148 + +0.8
1,120,148 + -2.3
1,120,148 + +3.5
1,120,148 + -1.5
1,120,148 + +1.0
1,120,149 - -1.7
1,120,149 - -1.6
1,120,149 - -0.7
1,120,149 - +0.9
1,120,149 - -1.2
1,120,149 - +2.8
1,120,149 - +1.0
1,120,149 - -0.7
1,120,260 + +0.0
1,120,260 + +2.0
1,120,260 + +1.0
1,120,261 - +2.4
1,120,278 + -2.1
1,120,284 + -1.3
1,120,285 - -2.2
1,120,306 + +3.9
1,120,306 + -0.6
1,120,307 - -0.2
1,120,324 + Psyr_0990 0.10 -1.9
1,120,324 + Psyr_0990 0.10 -0.3
1,120,324 + Psyr_0990 0.10 -1.3
1,120,389 + Psyr_0990 0.14 -0.8
1,120,533 + Psyr_0990 0.23 +0.0
1,120,533 + Psyr_0990 0.23 +1.4
1,120,533 + Psyr_0990 0.23 +1.6
1,120,534 - Psyr_0990 0.23 -4.5
1,120,534 - Psyr_0990 0.23 -0.2
1,120,621 + Psyr_0990 0.28 +0.3
1,120,621 + Psyr_0990 0.28 -1.0
1,120,622 - Psyr_0990 0.28 +4.0
1,120,622 - Psyr_0990 0.28 -3.2
1,120,622 - Psyr_0990 0.28 +0.0
1,120,632 + Psyr_0990 0.29 -2.8
1,120,633 - Psyr_0990 0.29 -1.7
1,120,633 - Psyr_0990 0.29 -0.9
1,120,665 + Psyr_0990 0.31 -2.7
1,120,666 - Psyr_0990 0.31 +2.8
1,120,666 - Psyr_0990 0.31 +0.7
1,120,710 + Psyr_0990 0.33 -0.6
1,120,710 + Psyr_0990 0.33 +3.4
1,120,711 - Psyr_0990 0.33 -0.1
1,120,711 - Psyr_0990 0.33 -2.2
1,120,711 - Psyr_0990 0.33 +4.0
1,120,711 - Psyr_0990 0.33 -0.3
1,120,746 + Psyr_0990 0.35 +2.4
1,120,746 + Psyr_0990 0.35 +1.3
1,120,746 + Psyr_0990 0.35 -0.6
1,120,746 + Psyr_0990 0.35 +1.1
1,120,746 + Psyr_0990 0.35 +0.0
1,120,746 + Psyr_0990 0.35 +3.2
1,120,747 - Psyr_0990 0.36 +1.6
1,120,747 - Psyr_0990 0.36 -1.0
1,120,842 + Psyr_0990 0.41 -1.3
1,120,842 + Psyr_0990 0.41 -1.1
1,120,842 + Psyr_0990 0.41 +1.6
1,120,842 + Psyr_0990 0.41 +3.0
1,120,842 + Psyr_0990 0.41 -0.6
1,120,842 + Psyr_0990 0.41 +3.2
1,120,843 - Psyr_0990 0.41 +0.7
1,120,843 - Psyr_0990 0.41 +3.0
1,120,843 - Psyr_0990 0.41 -1.5
1,120,843 - Psyr_0990 0.41 -2.1
1,120,843 - Psyr_0990 0.41 -0.3
1,120,843 - Psyr_0990 0.41 -3.4
1,120,843 - Psyr_0990 0.41 +1.2
1,120,843 - Psyr_0990 0.41 -1.4
1,120,923 + Psyr_0990 0.46 +3.9

Or see this region's nucleotide sequence