Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0982

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0980 and Psyr_0981 are separated by 103 nucleotidesPsyr_0981 and Psyr_0982 overlap by 1 nucleotidesPsyr_0982 and Psyr_0983 are separated by 29 nucleotidesPsyr_0983 and Psyr_0984 are separated by 154 nucleotides Psyr_0980: Psyr_0980 - Phospholipid/glycerol acyltransferase, at 1,112,214 to 1,113,380 _0980 Psyr_0981: Psyr_0981 - conserved hypothetical protein, at 1,113,484 to 1,113,666 _0981 Psyr_0982: Psyr_0982 - conserved hypothetical protein, at 1,113,666 to 1,113,926 _0982 Psyr_0983: Psyr_0983 - Protein of unknown function DUF159, at 1,113,956 to 1,114,585 _0983 Psyr_0984: Psyr_0984 - Peptidase M48, Ste24p, at 1,114,740 to 1,115,588 _0984 Position (kb) 1113 1114Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.456 kb on - strandat 1113.458 kb on - strandat 1113.458 kb on - strandat 1113.458 kb on - strandat 1113.464 kb on - strandat 1113.495 kb on - strandat 1113.503 kb on - strand, within Psyr_0981at 1113.503 kb on - strand, within Psyr_0981at 1113.547 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.569 kb on - strand, within Psyr_0981at 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.679 kb on - strandat 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.861 kb on + strand, within Psyr_0982at 1113.862 kb on - strand, within Psyr_0982at 1113.862 kb on - strand, within Psyr_0982at 1113.867 kb on - strand, within Psyr_0982at 1113.913 kb on + strandat 1113.913 kb on + strandat 1113.913 kb on + strandat 1113.913 kb on + strandat 1113.914 kb on - strandat 1113.914 kb on - strandat 1113.969 kb on - strandat 1114.043 kb on - strand, within Psyr_0983at 1114.253 kb on + strand, within Psyr_0983at 1114.253 kb on + strand, within Psyr_0983at 1114.253 kb on + strand, within Psyr_0983at 1114.254 kb on - strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.360 kb on + strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.361 kb on - strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.364 kb on + strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.365 kb on - strand, within Psyr_0983at 1114.583 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.638 kb on + strandat 1114.639 kb on - strandat 1114.639 kb on - strandat 1114.639 kb on - strandat 1114.639 kb on - strandat 1114.647 kb on + strandat 1114.752 kb on + strandat 1114.752 kb on + strandat 1114.752 kb on + strandat 1114.752 kb on + strandat 1114.752 kb on + strandat 1114.752 kb on + strandat 1114.753 kb on - strandat 1114.753 kb on - strandat 1114.753 kb on - strandat 1114.753 kb on - strandat 1114.757 kb on + strandat 1114.757 kb on + strandat 1114.758 kb on - strandat 1114.758 kb on - strandat 1114.764 kb on + strandat 1114.764 kb on + strandat 1114.764 kb on + strandat 1114.764 kb on + strandat 1114.764 kb on + strandat 1114.764 kb on + strandat 1114.765 kb on - strandat 1114.765 kb on - strandat 1114.765 kb on - strandat 1114.838 kb on + strand, within Psyr_0984at 1114.838 kb on + strand, within Psyr_0984at 1114.838 kb on + strand, within Psyr_0984at 1114.878 kb on + strand, within Psyr_0984at 1114.878 kb on + strand, within Psyr_0984at 1114.878 kb on + strand, within Psyr_0984at 1114.878 kb on + strand, within Psyr_0984at 1114.878 kb on + strand, within Psyr_0984at 1114.878 kb on + strand, within Psyr_0984at 1114.878 kb on + strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.879 kb on - strand, within Psyr_0984at 1114.921 kb on - strand, within Psyr_0984

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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1,113,456 - -1.9
1,113,456 - -1.1
1,113,456 - +0.3
1,113,456 - -1.0
1,113,456 - -0.7
1,113,456 - -2.3
1,113,458 - +2.6
1,113,458 - -1.4
1,113,458 - -0.1
1,113,464 - +1.0
1,113,495 - +0.0
1,113,503 - Psyr_0981 0.10 -1.9
1,113,503 - Psyr_0981 0.10 -3.6
1,113,547 - Psyr_0981 0.34 -1.0
1,113,569 - Psyr_0981 0.46 -0.2
1,113,569 - Psyr_0981 0.46 -4.0
1,113,569 - Psyr_0981 0.46 +0.5
1,113,569 - Psyr_0981 0.46 -1.3
1,113,569 - Psyr_0981 0.46 -2.1
1,113,569 - Psyr_0981 0.46 +0.1
1,113,569 - Psyr_0981 0.46 +0.3
1,113,679 - -0.7
1,113,679 - -2.6
1,113,679 - -2.1
1,113,679 - -1.1
1,113,679 - +1.6
1,113,679 - +2.8
1,113,861 + Psyr_0982 0.75 +1.0
1,113,861 + Psyr_0982 0.75 -4.2
1,113,861 + Psyr_0982 0.75 -4.1
1,113,861 + Psyr_0982 0.75 -4.7
1,113,861 + Psyr_0982 0.75 -2.9
1,113,862 - Psyr_0982 0.75 +0.3
1,113,862 - Psyr_0982 0.75 +0.0
1,113,867 - Psyr_0982 0.77 +3.9
1,113,913 + -3.1
1,113,913 + +0.0
1,113,913 + +2.6
1,113,913 + +1.0
1,113,914 - +2.6
1,113,914 - +2.0
1,113,969 - +2.4
1,114,043 - Psyr_0983 0.14 -0.7
1,114,253 + Psyr_0983 0.47 -2.1
1,114,253 + Psyr_0983 0.47 +0.0
1,114,253 + Psyr_0983 0.47 -1.7
1,114,254 - Psyr_0983 0.47 +0.4
1,114,360 + Psyr_0983 0.64 +1.4
1,114,360 + Psyr_0983 0.64 -1.0
1,114,360 + Psyr_0983 0.64 +3.6
1,114,360 + Psyr_0983 0.64 -2.2
1,114,360 + Psyr_0983 0.64 -0.2
1,114,360 + Psyr_0983 0.64 -1.1
1,114,360 + Psyr_0983 0.64 -0.3
1,114,360 + Psyr_0983 0.64 +2.4
1,114,361 - Psyr_0983 0.64 +0.5
1,114,361 - Psyr_0983 0.64 -1.4
1,114,361 - Psyr_0983 0.64 -1.2
1,114,361 - Psyr_0983 0.64 +2.0
1,114,361 - Psyr_0983 0.64 -1.7
1,114,361 - Psyr_0983 0.64 +3.0
1,114,361 - Psyr_0983 0.64 +2.6
1,114,364 + Psyr_0983 0.65 +1.6
1,114,364 + Psyr_0983 0.65 -1.6
1,114,364 + Psyr_0983 0.65 -2.3
1,114,364 + Psyr_0983 0.65 +1.0
1,114,364 + Psyr_0983 0.65 -4.1
1,114,364 + Psyr_0983 0.65 -2.6
1,114,364 + Psyr_0983 0.65 +2.0
1,114,365 - Psyr_0983 0.65 +0.6
1,114,365 - Psyr_0983 0.65 +1.6
1,114,365 - Psyr_0983 0.65 +3.0
1,114,365 - Psyr_0983 0.65 -4.0
1,114,365 - Psyr_0983 0.65 -0.6
1,114,583 + +1.0
1,114,638 + +1.4
1,114,638 + +2.3
1,114,638 + -0.7
1,114,638 + +4.6
1,114,638 + -1.1
1,114,639 - +1.0
1,114,639 - +2.0
1,114,639 - -0.5
1,114,639 - +0.6
1,114,647 + +2.8
1,114,752 + +0.6
1,114,752 + +2.8
1,114,752 + -0.8
1,114,752 + -1.8
1,114,752 + -1.1
1,114,752 + +1.0
1,114,753 - -2.6
1,114,753 - +2.8
1,114,753 - -2.0
1,114,753 - +3.5
1,114,757 + -2.8
1,114,757 + +0.8
1,114,758 - +0.2
1,114,758 - +3.0
1,114,764 + -1.7
1,114,764 + +0.4
1,114,764 + -2.0
1,114,764 + -0.2
1,114,764 + +3.0
1,114,764 + +2.0
1,114,765 - +2.8
1,114,765 - +0.4
1,114,765 - +0.4
1,114,838 + Psyr_0984 0.12 +1.5
1,114,838 + Psyr_0984 0.12 -0.9
1,114,838 + Psyr_0984 0.12 -0.8
1,114,878 + Psyr_0984 0.16 -1.1
1,114,878 + Psyr_0984 0.16 -1.1
1,114,878 + Psyr_0984 0.16 +0.0
1,114,878 + Psyr_0984 0.16 +1.0
1,114,878 + Psyr_0984 0.16 +2.3
1,114,878 + Psyr_0984 0.16 +3.2
1,114,878 + Psyr_0984 0.16 -0.7
1,114,879 - Psyr_0984 0.16 -0.7
1,114,879 - Psyr_0984 0.16 +3.4
1,114,879 - Psyr_0984 0.16 +3.6
1,114,879 - Psyr_0984 0.16 -2.0
1,114,879 - Psyr_0984 0.16 +0.6
1,114,879 - Psyr_0984 0.16 +3.8
1,114,879 - Psyr_0984 0.16 +0.0
1,114,879 - Psyr_0984 0.16 +2.1
1,114,879 - Psyr_0984 0.16 +0.3
1,114,879 - Psyr_0984 0.16 -0.9
1,114,879 - Psyr_0984 0.16 +3.4
1,114,879 - Psyr_0984 0.16 +3.4
1,114,921 - Psyr_0984 0.21 -1.5

Or see this region's nucleotide sequence