Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0897 and Psyr_0898 are separated by 84 nucleotides Psyr_0898 and Psyr_0899 are separated by 0 nucleotides Psyr_0899 and Psyr_0900 are separated by 62 nucleotides
Psyr_0897: Psyr_0897 - Protein of unknown function DUF6, at 1,016,129 to 1,017,100
_0897
Psyr_0898: Psyr_0898 - TRAP dicarboxylate transporter, DctM subunit, at 1,017,185 to 1,018,465
_0898
Psyr_0899: Psyr_0899 - Tripartite ATP-independent periplasmic transporter, DctQ component, at 1,018,466 to 1,018,993
_0899
Psyr_0900: Psyr_0900 - TRAP dicarboxylate transporter- DctP subunit, at 1,019,056 to 1,020,081
_0900
Position (kb) 1017
1018
1019 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1016.525 kb on + strand, within Psyr_0897 at 1016.526 kb on - strand, within Psyr_0897 at 1016.604 kb on + strand, within Psyr_0897 at 1016.812 kb on + strand, within Psyr_0897 at 1016.812 kb on + strand, within Psyr_0897 at 1016.812 kb on + strand, within Psyr_0897 at 1016.813 kb on - strand, within Psyr_0897 at 1016.813 kb on - strand, within Psyr_0897 at 1016.813 kb on - strand, within Psyr_0897 at 1016.813 kb on - strand, within Psyr_0897 at 1016.829 kb on + strand, within Psyr_0897 at 1016.830 kb on - strand, within Psyr_0897 at 1016.830 kb on - strand, within Psyr_0897 at 1016.830 kb on - strand, within Psyr_0897 at 1016.830 kb on - strand, within Psyr_0897 at 1016.830 kb on - strand, within Psyr_0897 at 1017.100 kb on + strand at 1017.100 kb on + strand at 1017.100 kb on + strand at 1017.100 kb on + strand at 1017.100 kb on + strand at 1017.100 kb on + strand at 1017.101 kb on - strand at 1017.101 kb on - strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.228 kb on + strand at 1017.229 kb on - strand at 1017.229 kb on - strand at 1017.229 kb on - strand at 1017.229 kb on - strand at 1017.229 kb on - strand at 1017.229 kb on - strand at 1017.229 kb on - strand at 1017.264 kb on + strand at 1017.264 kb on + strand at 1017.264 kb on + strand at 1017.264 kb on + strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.265 kb on - strand at 1017.284 kb on + strand at 1017.285 kb on - strand at 1017.285 kb on - strand at 1017.285 kb on - strand at 1017.285 kb on - strand at 1017.525 kb on + strand, within Psyr_0898 at 1017.594 kb on + strand, within Psyr_0898 at 1017.595 kb on - strand, within Psyr_0898 at 1017.595 kb on - strand, within Psyr_0898 at 1017.687 kb on + strand, within Psyr_0898 at 1017.688 kb on - strand, within Psyr_0898 at 1017.787 kb on + strand, within Psyr_0898 at 1017.787 kb on + strand, within Psyr_0898 at 1017.788 kb on - strand, within Psyr_0898 at 1017.788 kb on - strand, within Psyr_0898 at 1017.993 kb on + strand, within Psyr_0898 at 1017.994 kb on - strand, within Psyr_0898 at 1017.994 kb on - strand, within Psyr_0898 at 1017.994 kb on - strand, within Psyr_0898 at 1018.436 kb on - strand at 1018.451 kb on + strand at 1018.451 kb on + strand at 1018.451 kb on + strand at 1018.451 kb on + strand at 1018.452 kb on - strand at 1018.452 kb on - strand at 1018.453 kb on + strand at 1018.453 kb on + strand at 1018.453 kb on + strand at 1018.453 kb on + strand at 1018.453 kb on + strand at 1018.454 kb on - strand at 1018.454 kb on - strand at 1018.454 kb on - strand at 1018.454 kb on - strand at 1018.454 kb on - strand at 1018.454 kb on - strand at 1018.468 kb on - strand at 1018.468 kb on - strand at 1018.468 kb on - strand at 1018.468 kb on - strand at 1018.468 kb on - strand at 1018.468 kb on - strand at 1018.557 kb on - strand, within Psyr_0899 at 1018.557 kb on - strand, within Psyr_0899 at 1018.649 kb on - strand, within Psyr_0899 at 1018.715 kb on + strand, within Psyr_0899 at 1018.715 kb on + strand, within Psyr_0899 at 1018.716 kb on - strand, within Psyr_0899 at 1018.716 kb on - strand, within Psyr_0899 at 1018.816 kb on + strand, within Psyr_0899 at 1018.816 kb on + strand, within Psyr_0899 at 1018.878 kb on + strand, within Psyr_0899 at 1018.878 kb on + strand, within Psyr_0899 at 1018.878 kb on + strand, within Psyr_0899 at 1018.879 kb on - strand, within Psyr_0899 at 1018.979 kb on + strand at 1018.985 kb on - strand at 1018.985 kb on - strand at 1018.985 kb on - strand at 1018.985 kb on - strand at 1018.985 kb on - strand at 1018.993 kb on + strand at 1019.057 kb on + strand at 1019.058 kb on - strand at 1019.133 kb on + strand at 1019.133 kb on + strand at 1019.134 kb on - strand at 1019.134 kb on - strand at 1019.134 kb on - strand at 1019.134 kb on - strand at 1019.135 kb on + strand at 1019.135 kb on + strand at 1019.135 kb on + strand at 1019.135 kb on + strand at 1019.135 kb on + strand at 1019.135 kb on + strand at 1019.136 kb on - strand at 1019.136 kb on - strand at 1019.136 kb on - strand at 1019.136 kb on - strand at 1019.136 kb on - strand at 1019.147 kb on + strand at 1019.147 kb on + strand at 1019.147 kb on + strand at 1019.147 kb on + strand at 1019.147 kb on + strand at 1019.147 kb on + strand at 1019.148 kb on - strand at 1019.148 kb on - strand at 1019.177 kb on + strand, within Psyr_0900 at 1019.177 kb on + strand, within Psyr_0900 at 1019.428 kb on - strand, within Psyr_0900 at 1019.439 kb on - strand, within Psyr_0900 at 1019.439 kb on - strand, within Psyr_0900
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 1,016,525 + Psyr_0897 0.41 +2.4 1,016,526 - Psyr_0897 0.41 -0.7 1,016,604 + Psyr_0897 0.49 +1.1 1,016,812 + Psyr_0897 0.70 +3.3 1,016,812 + Psyr_0897 0.70 +2.1 1,016,812 + Psyr_0897 0.70 -2.5 1,016,813 - Psyr_0897 0.70 +0.1 1,016,813 - Psyr_0897 0.70 +0.4 1,016,813 - Psyr_0897 0.70 -0.2 1,016,813 - Psyr_0897 0.70 -2.1 1,016,829 + Psyr_0897 0.72 -0.6 1,016,830 - Psyr_0897 0.72 +3.4 1,016,830 - Psyr_0897 0.72 +4.5 1,016,830 - Psyr_0897 0.72 +0.6 1,016,830 - Psyr_0897 0.72 +0.1 1,016,830 - Psyr_0897 0.72 +4.4 1,017,100 + +2.4 1,017,100 + -0.8 1,017,100 + -0.7 1,017,100 + +3.4 1,017,100 + +1.2 1,017,100 + -3.3 1,017,101 - +3.8 1,017,101 - +1.7 1,017,228 + +2.9 1,017,228 + -0.6 1,017,228 + +2.4 1,017,228 + +0.7 1,017,228 + +2.4 1,017,228 + -1.7 1,017,228 + -2.0 1,017,228 + +2.4 1,017,228 + -2.4 1,017,229 - +3.4 1,017,229 - +2.7 1,017,229 - +2.1 1,017,229 - +2.9 1,017,229 - +0.6 1,017,229 - +0.7 1,017,229 - -0.3 1,017,264 + -1.7 1,017,264 + +3.1 1,017,264 + +1.1 1,017,264 + +3.4 1,017,265 - +2.4 1,017,265 - -1.3 1,017,265 - +0.7 1,017,265 - +3.6 1,017,265 - +3.6 1,017,265 - +0.3 1,017,265 - +2.9 1,017,265 - +3.6 1,017,265 - +0.5 1,017,265 - +3.9 1,017,265 - -1.8 1,017,284 + -1.2 1,017,285 - +3.1 1,017,285 - +5.3 1,017,285 - +2.9 1,017,285 - -2.1 1,017,525 + Psyr_0898 0.27 +0.8 1,017,594 + Psyr_0898 0.32 -1.2 1,017,595 - Psyr_0898 0.32 +1.2 1,017,595 - Psyr_0898 0.32 +0.1 1,017,687 + Psyr_0898 0.39 +3.4 1,017,688 - Psyr_0898 0.39 -1.9 1,017,787 + Psyr_0898 0.47 +0.1 1,017,787 + Psyr_0898 0.47 -1.2 1,017,788 - Psyr_0898 0.47 +4.6 1,017,788 - Psyr_0898 0.47 +5.1 1,017,993 + Psyr_0898 0.63 -0.9 1,017,994 - Psyr_0898 0.63 -0.5 1,017,994 - Psyr_0898 0.63 +2.9 1,017,994 - Psyr_0898 0.63 +2.4 1,018,436 - -0.7 1,018,451 + +1.1 1,018,451 + +1.1 1,018,451 + -2.0 1,018,451 + +2.1 1,018,452 - +0.3 1,018,452 - -0.2 1,018,453 + -0.1 1,018,453 + +0.5 1,018,453 + +0.1 1,018,453 + -0.4 1,018,453 + +2.1 1,018,454 - +3.7 1,018,454 - -2.9 1,018,454 - +3.8 1,018,454 - -0.7 1,018,454 - +4.3 1,018,454 - -0.7 1,018,468 - +2.2 1,018,468 - -0.1 1,018,468 - +1.0 1,018,468 - +3.7 1,018,468 - +1.0 1,018,468 - -0.5 1,018,557 - Psyr_0899 0.17 +3.9 1,018,557 - Psyr_0899 0.17 -1.4 1,018,649 - Psyr_0899 0.35 +3.6 1,018,715 + Psyr_0899 0.47 -0.0 1,018,715 + Psyr_0899 0.47 +0.1 1,018,716 - Psyr_0899 0.47 +3.1 1,018,716 - Psyr_0899 0.47 -2.3 1,018,816 + Psyr_0899 0.66 +2.4 1,018,816 + Psyr_0899 0.66 -0.6 1,018,878 + Psyr_0899 0.78 +0.7 1,018,878 + Psyr_0899 0.78 -0.9 1,018,878 + Psyr_0899 0.78 -1.4 1,018,879 - Psyr_0899 0.78 +4.4 1,018,979 + -1.8 1,018,985 - +3.4 1,018,985 - +0.5 1,018,985 - +1.3 1,018,985 - -1.5 1,018,985 - -4.1 1,018,993 + -1.3 1,019,057 + -2.1 1,019,058 - +0.4 1,019,133 + -1.8 1,019,133 + +0.7 1,019,134 - +3.7 1,019,134 - -1.2 1,019,134 - +3.3 1,019,134 - -1.1 1,019,135 + +0.1 1,019,135 + +3.3 1,019,135 + -0.8 1,019,135 + +0.7 1,019,135 + +1.7 1,019,135 + -2.1 1,019,136 - -4.5 1,019,136 - +0.8 1,019,136 - +0.8 1,019,136 - +2.1 1,019,136 - +0.5 1,019,147 + -1.8 1,019,147 + +1.3 1,019,147 + +1.1 1,019,147 + -0.1 1,019,147 + -1.0 1,019,147 + -1.8 1,019,148 - -0.4 1,019,148 - +0.1 1,019,177 + Psyr_0900 0.12 +0.8 1,019,177 + Psyr_0900 0.12 +3.7 1,019,428 - Psyr_0900 0.36 +0.1 1,019,439 - Psyr_0900 0.37 -0.2 1,019,439 - Psyr_0900 0.37 -0.0
Or see this region's nucleotide sequence