Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0868 and Psyr_0869 are separated by 8 nucleotides Psyr_0869 and Psyr_0870 are separated by 81 nucleotides Psyr_0870 and Psyr_0871 are separated by 303 nucleotides
Psyr_0868: Psyr_0868 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 989,205 to 990,845
_0868
Psyr_0869: Psyr_0869 - GCN5-related N-acetyltransferase, at 990,854 to 991,291
_0869
Psyr_0870: Psyr_0870 - GGDEF domain protein, at 991,373 to 992,566
_0870
Psyr_0871: Psyr_0871 - PAS, at 992,870 to 994,183
_0871
Position (kb) 991
992
993 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 990.827 kb on - strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 991.325 kb on + strand at 991.325 kb on + strand at 991.326 kb on - strand at 991.326 kb on - strand at 991.326 kb on - strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.394 kb on - strand at 991.394 kb on - strand at 991.416 kb on + strand at 991.700 kb on - strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.731 kb on + strand, within Psyr_0870 at 991.731 kb on + strand, within Psyr_0870 at 991.732 kb on - strand, within Psyr_0870 at 991.732 kb on - strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.918 kb on - strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.948 kb on - strand, within Psyr_0870 at 991.948 kb on - strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.118 kb on + strand, within Psyr_0870 at 992.119 kb on - strand, within Psyr_0870 at 992.148 kb on + strand, within Psyr_0870 at 992.211 kb on - strand, within Psyr_0870 at 992.211 kb on - strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.345 kb on + strand, within Psyr_0870 at 992.345 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.446 kb on - strand, within Psyr_0870 at 992.582 kb on + strand at 992.583 kb on - strand at 992.583 kb on - strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.634 kb on - strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.782 kb on - strand at 992.824 kb on + strand at 992.838 kb on + strand at 992.838 kb on + strand at 992.839 kb on - strand at 992.839 kb on - strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.898 kb on + strand at 992.899 kb on - strand at 992.899 kb on - strand at 992.919 kb on + strand at 992.919 kb on + strand at 992.920 kb on - strand at 992.920 kb on - strand at 992.920 kb on - strand at 992.927 kb on + strand at 992.928 kb on - strand at 992.988 kb on - strand at 992.988 kb on - strand at 993.022 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.251 kb on + strand, within Psyr_0871 at 993.305 kb on - strand, within Psyr_0871 at 993.422 kb on - strand, within Psyr_0871 at 993.530 kb on - strand, within Psyr_0871 at 993.535 kb on + strand, within Psyr_0871
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 990,827 - +2.9 990,848 + +3.6 990,848 + -1.4 990,848 + +2.9 990,848 + +1.1 990,848 + -0.1 990,848 + -0.2 990,848 + +0.8 990,848 + +3.1 990,849 - +1.8 990,849 - -2.3 990,849 - -0.9 990,849 - -1.3 990,849 - +0.3 990,849 - -0.9 990,849 - +3.1 990,849 - +2.5 990,849 - -0.4 991,325 + -0.2 991,325 + -2.6 991,326 - -1.1 991,326 - +1.6 991,326 - -0.6 991,393 + -0.4 991,393 + +1.0 991,393 + -3.8 991,393 + +0.1 991,394 - +3.3 991,394 - -1.5 991,416 + +1.4 991,700 - Psyr_0870 0.27 -2.7 991,719 + Psyr_0870 0.29 -0.5 991,719 + Psyr_0870 0.29 +3.4 991,719 + Psyr_0870 0.29 -0.1 991,719 + Psyr_0870 0.29 +2.9 991,719 + Psyr_0870 0.29 +4.0 991,719 + Psyr_0870 0.29 -1.3 991,719 + Psyr_0870 0.29 +1.6 991,720 - Psyr_0870 0.29 +2.7 991,720 - Psyr_0870 0.29 +0.9 991,720 - Psyr_0870 0.29 -0.7 991,720 - Psyr_0870 0.29 -1.7 991,720 - Psyr_0870 0.29 +3.7 991,720 - Psyr_0870 0.29 +0.5 991,720 - Psyr_0870 0.29 -1.4 991,731 + Psyr_0870 0.30 +2.1 991,731 + Psyr_0870 0.30 -0.1 991,732 - Psyr_0870 0.30 -2.1 991,732 - Psyr_0870 0.30 -0.1 991,917 + Psyr_0870 0.46 +0.5 991,917 + Psyr_0870 0.46 -0.5 991,917 + Psyr_0870 0.46 +0.1 991,918 - Psyr_0870 0.46 +1.1 991,947 + Psyr_0870 0.48 -0.1 991,947 + Psyr_0870 0.48 -1.3 991,947 + Psyr_0870 0.48 +0.7 991,947 + Psyr_0870 0.48 -1.6 991,948 - Psyr_0870 0.48 +2.1 991,948 - Psyr_0870 0.48 -2.8 992,034 + Psyr_0870 0.55 -0.6 992,034 + Psyr_0870 0.55 -3.8 992,034 + Psyr_0870 0.55 +3.8 992,034 + Psyr_0870 0.55 -0.8 992,034 + Psyr_0870 0.55 +0.5 992,034 + Psyr_0870 0.55 -1.1 992,034 + Psyr_0870 0.55 +0.8 992,034 + Psyr_0870 0.55 +2.1 992,034 + Psyr_0870 0.55 +0.0 992,034 + Psyr_0870 0.55 +0.8 992,034 + Psyr_0870 0.55 +2.2 992,034 + Psyr_0870 0.55 +1.7 992,034 + Psyr_0870 0.55 +3.3 992,034 + Psyr_0870 0.55 -0.6 992,034 + Psyr_0870 0.55 -1.2 992,034 + Psyr_0870 0.55 +3.4 992,034 + Psyr_0870 0.55 +0.1 992,034 + Psyr_0870 0.55 -0.3 992,035 - Psyr_0870 0.55 +2.9 992,035 - Psyr_0870 0.55 +2.1 992,035 - Psyr_0870 0.55 -1.0 992,035 - Psyr_0870 0.55 +3.1 992,035 - Psyr_0870 0.55 -1.3 992,035 - Psyr_0870 0.55 +1.1 992,035 - Psyr_0870 0.55 +2.7 992,035 - Psyr_0870 0.55 -2.6 992,035 - Psyr_0870 0.55 -0.5 992,035 - Psyr_0870 0.55 +0.1 992,035 - Psyr_0870 0.55 +3.7 992,035 - Psyr_0870 0.55 -0.4 992,035 - Psyr_0870 0.55 -1.2 992,035 - Psyr_0870 0.55 +2.8 992,035 - Psyr_0870 0.55 +0.5 992,066 + Psyr_0870 0.58 -0.6 992,066 + Psyr_0870 0.58 +1.5 992,066 + Psyr_0870 0.58 +3.7 992,066 + Psyr_0870 0.58 +0.5 992,066 + Psyr_0870 0.58 +4.0 992,067 - Psyr_0870 0.58 -1.3 992,067 - Psyr_0870 0.58 +3.3 992,067 - Psyr_0870 0.58 -1.0 992,067 - Psyr_0870 0.58 +2.4 992,067 - Psyr_0870 0.58 -2.1 992,118 + Psyr_0870 0.62 +0.0 992,119 - Psyr_0870 0.62 +1.1 992,148 + Psyr_0870 0.65 -1.0 992,211 - Psyr_0870 0.70 +1.4 992,211 - Psyr_0870 0.70 +0.9 992,325 + Psyr_0870 0.80 -1.5 992,325 + Psyr_0870 0.80 +2.1 992,325 + Psyr_0870 0.80 -1.0 992,326 - Psyr_0870 0.80 -0.5 992,326 - Psyr_0870 0.80 -0.9 992,326 - Psyr_0870 0.80 +3.7 992,326 - Psyr_0870 0.80 +0.7 992,345 + Psyr_0870 0.81 +0.6 992,345 + Psyr_0870 0.81 +0.4 992,376 + Psyr_0870 0.84 -2.4 992,376 + Psyr_0870 0.84 -1.1 992,376 + Psyr_0870 0.84 +0.4 992,376 + Psyr_0870 0.84 -3.6 992,376 + Psyr_0870 0.84 -0.7 992,377 - Psyr_0870 0.84 +3.8 992,377 - Psyr_0870 0.84 -1.1 992,377 - Psyr_0870 0.84 -1.0 992,446 - Psyr_0870 0.90 +0.3 992,582 + -0.2 992,583 - +2.7 992,583 - +0.6 992,597 + +0.3 992,597 + -0.0 992,597 + +3.3 992,597 + -1.4 992,597 + +2.1 992,597 + -1.0 992,598 - -0.9 992,598 - +2.4 992,598 - -1.4 992,598 - -1.0 992,598 - +0.0 992,598 - -1.3 992,598 - +3.3 992,598 - -0.2 992,634 - -1.8 992,781 + -0.6 992,781 + -0.5 992,781 + -0.7 992,781 + +3.8 992,781 + +1.4 992,782 - -1.2 992,824 + +3.5 992,838 + +2.1 992,838 + +3.1 992,839 - +1.1 992,839 - +0.3 992,840 + -0.9 992,840 + +2.7 992,840 + +0.8 992,840 + -0.5 992,840 + +0.7 992,840 + +3.1 992,840 + +1.1 992,840 + +1.5 992,840 + -3.0 992,840 + +3.3 992,840 + -0.7 992,841 - +2.5 992,841 - -0.8 992,841 - +1.1 992,841 - +0.8 992,841 - -4.0 992,841 - +0.3 992,841 - +1.4 992,842 + +1.7 992,842 + -0.0 992,842 + -1.0 992,842 + +2.5 992,842 + -2.1 992,842 + +0.1 992,842 + -2.4 992,842 + +0.1 992,842 + +2.5 992,842 + -0.8 992,842 + +4.5 992,843 - -1.6 992,843 - +3.5 992,843 - +0.7 992,843 - -1.5 992,843 - +3.5 992,843 - +3.1 992,843 - -0.1 992,843 - +3.3 992,843 - -0.9 992,843 - +0.7 992,843 - -0.0 992,843 - +3.7 992,846 + -2.1 992,846 + +3.5 992,846 + +2.5 992,846 + +0.6 992,846 + +2.1 992,846 + +3.5 992,846 + +0.1 992,846 + -0.9 992,846 + -0.7 992,846 + +1.8 992,846 + +3.9 992,846 + +1.1 992,846 + +2.5 992,846 + +0.5 992,846 + +4.1 992,846 + +0.0 992,846 + +0.6 992,847 - -1.5 992,847 - -0.5 992,847 - +1.8 992,847 - -1.9 992,847 - +3.5 992,847 - -1.0 992,847 - -0.5 992,898 + +1.7 992,899 - +4.8 992,899 - +0.5 992,919 + -0.3 992,919 + -0.0 992,920 - +0.0 992,920 - -1.6 992,920 - +4.3 992,927 + +0.1 992,928 - +1.1 992,988 - -1.7 992,988 - -0.1 993,022 + Psyr_0871 0.12 +0.9 993,083 + Psyr_0871 0.16 +0.7 993,083 + Psyr_0871 0.16 +3.5 993,083 + Psyr_0871 0.16 -1.2 993,083 + Psyr_0871 0.16 +2.5 993,083 + Psyr_0871 0.16 +3.1 993,083 + Psyr_0871 0.16 -0.4 993,083 + Psyr_0871 0.16 +0.1 993,083 + Psyr_0871 0.16 +0.1 993,083 + Psyr_0871 0.16 +3.5 993,084 - Psyr_0871 0.16 -5.0 993,084 - Psyr_0871 0.16 -1.1 993,084 - Psyr_0871 0.16 +4.0 993,084 - Psyr_0871 0.16 +3.1 993,084 - Psyr_0871 0.16 +1.1 993,084 - Psyr_0871 0.16 +0.1 993,084 - Psyr_0871 0.16 +3.3 993,084 - Psyr_0871 0.16 +5.0 993,251 + Psyr_0871 0.29 +1.8 993,305 - Psyr_0871 0.33 -3.7 993,422 - Psyr_0871 0.42 +0.1 993,530 - Psyr_0871 0.50 -1.4 993,535 + Psyr_0871 0.51 -0.5
Or see this region's nucleotide sequence