Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0834 and Psyr_0835 are separated by 531 nucleotides Psyr_0835 and Psyr_0836 are separated by 348 nucleotides
Psyr_0834: Psyr_0834 - Glutamyl-tRNA synthetase, class Ic, at 945,989 to 946,876
_0834
Psyr_0835: Psyr_0835 - transcriptional regulator, TraR/DksA family, at 947,408 to 947,848
_0835
Psyr_0836: Psyr_0836 - Aminotransferase, class I and II, at 948,197 to 949,369
_0836
Position (kb) 947
948 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 946.458 kb on + strand, within Psyr_0834 at 946.534 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.581 kb on + strand, within Psyr_0834 at 946.718 kb on + strand, within Psyr_0834 at 946.789 kb on - strand at 946.858 kb on + strand at 946.933 kb on + strand at 947.238 kb on + strand at 947.345 kb on + strand at 947.345 kb on + strand at 947.346 kb on - strand at 947.346 kb on - strand at 947.346 kb on - strand at 947.413 kb on + strand at 947.414 kb on - strand at 947.507 kb on + strand, within Psyr_0835 at 947.532 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.687 kb on + strand, within Psyr_0835 at 947.688 kb on - strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.796 kb on + strand, within Psyr_0835 at 947.796 kb on + strand, within Psyr_0835 at 947.816 kb on + strand at 947.816 kb on + strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.872 kb on + strand at 947.872 kb on + strand at 947.873 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.939 kb on + strand at 947.939 kb on + strand at 947.939 kb on + strand at 947.940 kb on - strand at 947.940 kb on - strand at 947.962 kb on + strand at 947.999 kb on - strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.044 kb on - strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.074 kb on - strand at 948.170 kb on + strand at 948.192 kb on + strand at 948.193 kb on - strand at 948.193 kb on - strand at 948.209 kb on + strand at 948.210 kb on - strand at 948.210 kb on - strand at 948.210 kb on - strand at 948.231 kb on + strand at 948.232 kb on - strand at 948.232 kb on - strand at 948.232 kb on - strand at 948.348 kb on + strand, within Psyr_0836 at 948.349 kb on - strand, within Psyr_0836 at 948.349 kb on - strand, within Psyr_0836 at 948.440 kb on + strand, within Psyr_0836 at 948.440 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.604 kb on - strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.830 kb on + strand, within Psyr_0836 at 948.830 kb on + strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 946,458 + Psyr_0834 0.53 +2.5 946,534 - Psyr_0834 0.61 -2.8 946,538 - Psyr_0834 0.62 +2.1 946,538 - Psyr_0834 0.62 -1.0 946,581 + Psyr_0834 0.67 -0.7 946,718 + Psyr_0834 0.82 +2.1 946,789 - -2.1 946,858 + +1.1 946,933 + -0.0 947,238 + -1.0 947,345 + +1.1 947,345 + -0.8 947,346 - +5.2 947,346 - -0.6 947,346 - +0.6 947,413 + -2.2 947,414 - +0.5 947,507 + Psyr_0835 0.22 -0.9 947,532 + Psyr_0835 0.28 +0.1 947,680 + Psyr_0835 0.62 -2.2 947,680 + Psyr_0835 0.62 +0.1 947,680 + Psyr_0835 0.62 -2.9 947,680 + Psyr_0835 0.62 +0.1 947,680 + Psyr_0835 0.62 -5.1 947,681 - Psyr_0835 0.62 -4.1 947,681 - Psyr_0835 0.62 +1.1 947,681 - Psyr_0835 0.62 +0.1 947,681 - Psyr_0835 0.62 +1.1 947,687 + Psyr_0835 0.63 +0.1 947,688 - Psyr_0835 0.63 +0.1 947,772 + Psyr_0835 0.83 -2.3 947,772 + Psyr_0835 0.83 +0.1 947,772 + Psyr_0835 0.83 +0.1 947,772 + Psyr_0835 0.83 +1.7 947,772 + Psyr_0835 0.83 +0.1 947,772 + Psyr_0835 0.83 +2.1 947,772 + Psyr_0835 0.83 +1.1 947,772 + Psyr_0835 0.83 -3.9 947,772 + Psyr_0835 0.83 +0.1 947,772 + Psyr_0835 0.83 +4.5 947,772 + Psyr_0835 0.83 +1.7 947,773 - Psyr_0835 0.83 -2.4 947,773 - Psyr_0835 0.83 +2.7 947,773 - Psyr_0835 0.83 -3.1 947,773 - Psyr_0835 0.83 +3.6 947,796 + Psyr_0835 0.88 -1.5 947,796 + Psyr_0835 0.88 -3.6 947,816 + -3.7 947,816 + +0.1 947,817 - +0.1 947,817 - -1.9 947,817 - +0.1 947,872 + +2.5 947,872 + -1.3 947,873 - +1.4 947,878 - +0.1 947,878 - +2.9 947,878 - +1.1 947,878 - -3.7 947,939 + +2.1 947,939 + -2.1 947,939 + +1.7 947,940 - -1.0 947,940 - +3.5 947,962 + -1.6 947,999 - +4.3 948,032 + +0.1 948,032 + +1.7 948,032 + -0.5 948,032 + +1.1 948,032 + -2.1 948,033 - +1.3 948,033 - -1.8 948,033 - -1.2 948,033 - -2.8 948,044 - +0.2 948,062 + +3.1 948,062 + +2.1 948,062 + -0.6 948,062 + -2.4 948,062 + -0.7 948,074 - +0.1 948,170 + +3.9 948,192 + +1.7 948,193 - +3.9 948,193 - -3.0 948,209 + +1.7 948,210 - +2.9 948,210 - -1.3 948,210 - -0.2 948,231 + -1.5 948,232 - -2.0 948,232 - -4.3 948,232 - +0.6 948,348 + Psyr_0836 0.13 +1.5 948,349 - Psyr_0836 0.13 +1.4 948,349 - Psyr_0836 0.13 +3.1 948,440 + Psyr_0836 0.21 +3.7 948,440 + Psyr_0836 0.21 -2.4 948,603 + Psyr_0836 0.35 -1.2 948,603 + Psyr_0836 0.35 +0.6 948,603 + Psyr_0836 0.35 +3.5 948,603 + Psyr_0836 0.35 +3.3 948,604 - Psyr_0836 0.35 +2.5 948,815 + Psyr_0836 0.53 -1.2 948,815 + Psyr_0836 0.53 +2.7 948,815 + Psyr_0836 0.53 -1.7 948,816 - Psyr_0836 0.53 +0.9 948,816 - Psyr_0836 0.53 -0.6 948,816 - Psyr_0836 0.53 +0.1 948,830 + Psyr_0836 0.54 +3.1 948,830 + Psyr_0836 0.54 +5.1 948,831 - Psyr_0836 0.54 -2.3 948,831 - Psyr_0836 0.54 -0.6 948,831 - Psyr_0836 0.54 +2.1 948,831 - Psyr_0836 0.54 -5.2
Or see this region's nucleotide sequence