Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0747

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0744 and Psyr_0745 overlap by 124 nucleotidesPsyr_0745 and Psyr_0746 are separated by 61 nucleotidesPsyr_0746 and Psyr_0747 are separated by 25 nucleotidesPsyr_0747 and Psyr_0748 are separated by 209 nucleotides Psyr_0744: Psyr_0744 - CDS, at 847,452 to 848,153 _0744 Psyr_0745: Psyr_0745 - CDS, at 848,030 to 848,569 _0745 Psyr_0746: Psyr_0746 - IS66 Orf2 like protein, at 848,631 to 848,996 _0746 Psyr_0747: Psyr_0747 - CDS, at 849,022 to 849,339 _0747 Psyr_0748: Psyr_0748 - Major facilitator superfamily, at 849,549 to 850,991 _0748 Position (kb) 849 850Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 848.084 kb on + strandat 848.084 kb on + strandat 848.084 kb on + strandat 848.084 kb on + strandat 848.088 kb on + strandat 848.088 kb on + strandat 848.088 kb on + strandat 848.101 kb on + strandat 848.102 kb on - strandat 848.133 kb on - strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.153 kb on + strandat 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.154 kb on - strand, within Psyr_0745at 848.187 kb on - strand, within Psyr_0745at 848.501 kb on + strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.502 kb on - strand, within Psyr_0745at 848.540 kb on - strandat 848.661 kb on + strandat 848.661 kb on + strandat 848.685 kb on + strand, within Psyr_0746at 848.686 kb on - strand, within Psyr_0746at 848.689 kb on - strand, within Psyr_0746at 848.738 kb on + strand, within Psyr_0746at 848.738 kb on + strand, within Psyr_0746at 848.739 kb on - strand, within Psyr_0746at 848.848 kb on + strand, within Psyr_0746at 848.849 kb on - strand, within Psyr_0746at 849.023 kb on + strandat 849.024 kb on - strandat 849.024 kb on - strandat 849.024 kb on - strandat 849.024 kb on - strandat 849.079 kb on + strand, within Psyr_0747at 849.079 kb on + strand, within Psyr_0747at 849.079 kb on + strand, within Psyr_0747at 849.080 kb on - strand, within Psyr_0747at 849.184 kb on - strand, within Psyr_0747at 849.204 kb on + strand, within Psyr_0747at 849.204 kb on + strand, within Psyr_0747at 849.204 kb on + strand, within Psyr_0747at 849.205 kb on - strand, within Psyr_0747at 849.205 kb on - strand, within Psyr_0747at 849.205 kb on - strand, within Psyr_0747at 849.269 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.276 kb on + strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.277 kb on - strand, within Psyr_0747at 849.310 kb on - strandat 849.324 kb on - strandat 849.361 kb on + strandat 849.362 kb on - strandat 849.362 kb on - strandat 849.387 kb on - strandat 849.390 kb on + strandat 849.390 kb on + strandat 849.390 kb on + strandat 849.391 kb on - strandat 849.399 kb on + strandat 849.399 kb on + strandat 849.399 kb on + strandat 849.403 kb on - strandat 849.403 kb on - strandat 849.428 kb on + strandat 849.428 kb on + strandat 849.428 kb on + strandat 849.429 kb on - strandat 849.429 kb on - strandat 849.429 kb on - strandat 849.432 kb on + strandat 849.432 kb on + strandat 849.432 kb on + strandat 849.433 kb on - strandat 849.433 kb on - strandat 849.453 kb on + strandat 849.532 kb on - strandat 849.534 kb on + strandat 849.534 kb on + strandat 849.535 kb on - strandat 849.621 kb on + strandat 849.622 kb on - strandat 849.622 kb on - strandat 849.622 kb on - strandat 849.680 kb on + strandat 849.689 kb on + strandat 849.690 kb on - strandat 849.744 kb on + strand, within Psyr_0748at 849.744 kb on + strand, within Psyr_0748at 849.744 kb on + strand, within Psyr_0748at 849.744 kb on + strand, within Psyr_0748at 849.744 kb on + strand, within Psyr_0748at 849.745 kb on - strand, within Psyr_0748at 849.745 kb on - strand, within Psyr_0748at 849.745 kb on - strand, within Psyr_0748at 849.745 kb on - strand, within Psyr_0748at 849.745 kb on - strand, within Psyr_0748at 849.758 kb on + strand, within Psyr_0748at 849.814 kb on - strand, within Psyr_0748at 849.868 kb on + strand, within Psyr_0748at 849.868 kb on + strand, within Psyr_0748at 849.869 kb on - strand, within Psyr_0748at 849.903 kb on + strand, within Psyr_0748at 849.903 kb on + strand, within Psyr_0748at 849.903 kb on + strand, within Psyr_0748at 849.904 kb on - strand, within Psyr_0748at 849.911 kb on + strand, within Psyr_0748at 849.911 kb on + strand, within Psyr_0748at 849.911 kb on + strand, within Psyr_0748at 849.912 kb on - strand, within Psyr_0748at 849.912 kb on - strand, within Psyr_0748at 849.912 kb on - strand, within Psyr_0748at 849.959 kb on + strand, within Psyr_0748at 849.959 kb on + strand, within Psyr_0748at 849.960 kb on - strand, within Psyr_0748at 850.052 kb on + strand, within Psyr_0748at 850.052 kb on + strand, within Psyr_0748at 850.053 kb on - strand, within Psyr_0748at 850.071 kb on + strand, within Psyr_0748at 850.072 kb on - strand, within Psyr_0748at 850.072 kb on - strand, within Psyr_0748at 850.085 kb on - strand, within Psyr_0748at 850.085 kb on - strand, within Psyr_0748at 850.085 kb on - strand, within Psyr_0748at 850.112 kb on - strand, within Psyr_0748at 850.112 kb on - strand, within Psyr_0748at 850.152 kb on + strand, within Psyr_0748at 850.157 kb on + strand, within Psyr_0748at 850.157 kb on + strand, within Psyr_0748at 850.157 kb on + strand, within Psyr_0748at 850.218 kb on - strand, within Psyr_0748at 850.218 kb on - strand, within Psyr_0748at 850.218 kb on - strand, within Psyr_0748at 850.224 kb on + strand, within Psyr_0748at 850.224 kb on + strand, within Psyr_0748at 850.225 kb on - strand, within Psyr_0748at 850.245 kb on + strand, within Psyr_0748at 850.250 kb on + strand, within Psyr_0748at 850.251 kb on - strand, within Psyr_0748at 850.283 kb on + strand, within Psyr_0748

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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848,084 + -1.3
848,084 + +0.3
848,084 + +0.2
848,084 + +0.4
848,088 + +2.4
848,088 + -1.3
848,088 + +0.4
848,101 + +3.7
848,102 - -0.7
848,133 - -3.7
848,153 + +2.1
848,153 + -3.9
848,153 + -0.2
848,153 + -1.6
848,153 + +1.1
848,153 + +3.3
848,153 + -1.2
848,153 + -0.3
848,153 + -0.6
848,153 + -1.2
848,153 + +1.1
848,154 - Psyr_0745 0.23 +2.9
848,154 - Psyr_0745 0.23 +0.9
848,154 - Psyr_0745 0.23 +2.8
848,154 - Psyr_0745 0.23 -5.0
848,154 - Psyr_0745 0.23 +0.9
848,154 - Psyr_0745 0.23 -1.9
848,154 - Psyr_0745 0.23 +0.1
848,154 - Psyr_0745 0.23 -1.3
848,187 - Psyr_0745 0.29 -1.7
848,501 + Psyr_0745 0.87 -1.1
848,502 - Psyr_0745 0.87 -1.1
848,502 - Psyr_0745 0.87 -2.6
848,502 - Psyr_0745 0.87 +0.1
848,502 - Psyr_0745 0.87 -1.2
848,540 - +4.3
848,661 + +1.4
848,661 + +0.8
848,685 + Psyr_0746 0.15 +3.8
848,686 - Psyr_0746 0.15 +0.3
848,689 - Psyr_0746 0.16 -1.3
848,738 + Psyr_0746 0.29 -1.2
848,738 + Psyr_0746 0.29 +2.4
848,739 - Psyr_0746 0.30 -2.0
848,848 + Psyr_0746 0.59 -1.4
848,849 - Psyr_0746 0.60 -0.8
849,023 + +1.1
849,024 - -1.1
849,024 - +1.2
849,024 - -0.9
849,024 - +1.4
849,079 + Psyr_0747 0.18 +4.3
849,079 + Psyr_0747 0.18 +3.4
849,079 + Psyr_0747 0.18 +4.0
849,080 - Psyr_0747 0.18 +2.4
849,184 - Psyr_0747 0.51 -0.9
849,204 + Psyr_0747 0.57 +2.9
849,204 + Psyr_0747 0.57 -0.8
849,204 + Psyr_0747 0.57 -1.1
849,205 - Psyr_0747 0.58 -1.0
849,205 - Psyr_0747 0.58 +0.3
849,205 - Psyr_0747 0.58 +3.1
849,269 + Psyr_0747 0.78 +0.1
849,276 + Psyr_0747 0.80 -1.4
849,276 + Psyr_0747 0.80 -0.2
849,276 + Psyr_0747 0.80 +3.4
849,276 + Psyr_0747 0.80 +2.9
849,276 + Psyr_0747 0.80 +3.4
849,276 + Psyr_0747 0.80 +2.4
849,276 + Psyr_0747 0.80 -1.7
849,276 + Psyr_0747 0.80 +0.4
849,277 - Psyr_0747 0.80 +0.3
849,277 - Psyr_0747 0.80 -0.5
849,277 - Psyr_0747 0.80 -0.1
849,277 - Psyr_0747 0.80 -0.4
849,277 - Psyr_0747 0.80 +0.1
849,277 - Psyr_0747 0.80 +0.7
849,277 - Psyr_0747 0.80 +0.1
849,277 - Psyr_0747 0.80 +1.1
849,277 - Psyr_0747 0.80 -0.8
849,277 - Psyr_0747 0.80 -0.8
849,277 - Psyr_0747 0.80 -2.1
849,310 - +1.7
849,324 - -1.0
849,361 + -1.7
849,362 - -0.8
849,362 - -0.1
849,387 - +3.7
849,390 + +2.7
849,390 + -1.0
849,390 + -0.4
849,391 - -0.8
849,399 + -1.6
849,399 + +2.7
849,399 + -0.8
849,403 - +1.8
849,403 - +3.3
849,428 + +1.1
849,428 + +1.7
849,428 + -2.5
849,429 - +3.1
849,429 - -2.2
849,429 - -0.1
849,432 + +3.6
849,432 + -0.5
849,432 + +2.7
849,433 - -2.2
849,433 - -1.5
849,453 + -1.4
849,532 - +0.3
849,534 + +0.1
849,534 + -2.4
849,535 - +1.4
849,621 + -3.4
849,622 - +2.7
849,622 - +1.3
849,622 - -1.1
849,680 + -2.0
849,689 + -0.9
849,690 - -1.2
849,744 + Psyr_0748 0.14 +0.1
849,744 + Psyr_0748 0.14 -1.5
849,744 + Psyr_0748 0.14 +0.3
849,744 + Psyr_0748 0.14 +2.9
849,744 + Psyr_0748 0.14 +0.3
849,745 - Psyr_0748 0.14 +1.1
849,745 - Psyr_0748 0.14 +0.5
849,745 - Psyr_0748 0.14 -0.8
849,745 - Psyr_0748 0.14 +1.1
849,745 - Psyr_0748 0.14 -3.4
849,758 + Psyr_0748 0.14 +1.1
849,814 - Psyr_0748 0.18 +2.1
849,868 + Psyr_0748 0.22 -2.0
849,868 + Psyr_0748 0.22 -1.5
849,869 - Psyr_0748 0.22 -1.3
849,903 + Psyr_0748 0.25 -1.8
849,903 + Psyr_0748 0.25 +1.1
849,903 + Psyr_0748 0.25 +3.4
849,904 - Psyr_0748 0.25 +0.2
849,911 + Psyr_0748 0.25 +0.8
849,911 + Psyr_0748 0.25 -0.5
849,911 + Psyr_0748 0.25 -1.6
849,912 - Psyr_0748 0.25 +1.0
849,912 - Psyr_0748 0.25 -5.5
849,912 - Psyr_0748 0.25 +2.1
849,959 + Psyr_0748 0.28 +0.3
849,959 + Psyr_0748 0.28 +2.1
849,960 - Psyr_0748 0.28 +2.4
850,052 + Psyr_0748 0.35 -0.9
850,052 + Psyr_0748 0.35 +1.1
850,053 - Psyr_0748 0.35 -0.3
850,071 + Psyr_0748 0.36 -2.7
850,072 - Psyr_0748 0.36 +3.1
850,072 - Psyr_0748 0.36 -0.8
850,085 - Psyr_0748 0.37 -3.8
850,085 - Psyr_0748 0.37 -0.3
850,085 - Psyr_0748 0.37 -3.0
850,112 - Psyr_0748 0.39 -2.3
850,112 - Psyr_0748 0.39 -1.6
850,152 + Psyr_0748 0.42 -0.5
850,157 + Psyr_0748 0.42 -1.9
850,157 + Psyr_0748 0.42 +0.1
850,157 + Psyr_0748 0.42 -2.1
850,218 - Psyr_0748 0.46 +2.1
850,218 - Psyr_0748 0.46 +3.1
850,218 - Psyr_0748 0.46 +1.1
850,224 + Psyr_0748 0.47 +0.3
850,224 + Psyr_0748 0.47 -2.2
850,225 - Psyr_0748 0.47 +2.4
850,245 + Psyr_0748 0.48 -2.3
850,250 + Psyr_0748 0.49 -1.5
850,251 - Psyr_0748 0.49 +1.7
850,283 + Psyr_0748 0.51 -0.6

Or see this region's nucleotide sequence