Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0670

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0669 and Psyr_0670 are separated by 123 nucleotidesPsyr_0670 and Psyr_0671 are separated by 285 nucleotides Psyr_0669: Psyr_0669 - Amidohydrolase, at 757,959 to 759,314 _0669 Psyr_0670: Psyr_0670 - Short-chain dehydrogenase/reductase SDR, at 759,438 to 760,163 _0670 Psyr_0671: Psyr_0671 - nucleoside ABC transporter membrane protein, at 760,449 to 761,378 _0671 Position (kb) 759 760 761Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 758.453 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.549 kb on - strand, within Psyr_0669at 758.743 kb on + strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.933 kb on - strand, within Psyr_0669at 758.933 kb on - strand, within Psyr_0669at 759.106 kb on + strand, within Psyr_0669at 759.107 kb on - strand, within Psyr_0669at 759.107 kb on - strand, within Psyr_0669at 759.300 kb on - strandat 759.300 kb on - strandat 759.398 kb on - strandat 759.496 kb on + strandat 759.639 kb on - strand, within Psyr_0670at 759.639 kb on - strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.677 kb on - strand, within Psyr_0670at 760.020 kb on + strand, within Psyr_0670at 760.020 kb on + strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.119 kb on - strandat 760.207 kb on + strandat 760.207 kb on + strandat 760.207 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.259 kb on - strandat 760.259 kb on - strandat 760.259 kb on - strandat 760.287 kb on + strandat 760.297 kb on + strandat 760.424 kb on - strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.442 kb on - strandat 760.442 kb on - strandat 760.442 kb on - strandat 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.639 kb on + strand, within Psyr_0671at 760.639 kb on + strand, within Psyr_0671at 760.640 kb on - strand, within Psyr_0671at 760.640 kb on - strand, within Psyr_0671at 760.744 kb on + strand, within Psyr_0671at 760.760 kb on - strand, within Psyr_0671at 760.939 kb on + strand, within Psyr_0671at 760.939 kb on + strand, within Psyr_0671at 760.939 kb on + strand, within Psyr_0671at 760.940 kb on - strand, within Psyr_0671at 760.940 kb on - strand, within Psyr_0671

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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758,453 + Psyr_0669 0.36 +3.6
758,535 + Psyr_0669 0.42 +1.3
758,535 + Psyr_0669 0.42 -0.4
758,535 + Psyr_0669 0.42 -0.3
758,535 + Psyr_0669 0.42 -0.3
758,535 + Psyr_0669 0.42 +3.4
758,535 + Psyr_0669 0.42 +1.7
758,535 + Psyr_0669 0.42 -1.2
758,535 + Psyr_0669 0.42 -1.5
758,536 - Psyr_0669 0.43 +0.6
758,536 - Psyr_0669 0.43 +4.9
758,536 - Psyr_0669 0.43 -2.2
758,536 - Psyr_0669 0.43 +0.9
758,548 + Psyr_0669 0.43 -0.0
758,548 + Psyr_0669 0.43 +0.1
758,548 + Psyr_0669 0.43 -1.6
758,548 + Psyr_0669 0.43 +0.1
758,549 - Psyr_0669 0.44 +0.4
758,743 + Psyr_0669 0.58 -0.6
758,744 - Psyr_0669 0.58 -1.8
758,744 - Psyr_0669 0.58 -1.0
758,744 - Psyr_0669 0.58 +1.7
758,744 - Psyr_0669 0.58 +0.3
758,744 - Psyr_0669 0.58 +0.2
758,932 + Psyr_0669 0.72 +0.1
758,932 + Psyr_0669 0.72 +1.7
758,932 + Psyr_0669 0.72 -0.4
758,932 + Psyr_0669 0.72 -2.4
758,932 + Psyr_0669 0.72 -1.0
758,932 + Psyr_0669 0.72 -0.9
758,932 + Psyr_0669 0.72 -0.9
758,933 - Psyr_0669 0.72 -1.1
758,933 - Psyr_0669 0.72 +1.7
759,106 + Psyr_0669 0.85 -1.2
759,107 - Psyr_0669 0.85 +0.9
759,107 - Psyr_0669 0.85 +3.4
759,300 - -1.0
759,300 - -1.0
759,398 - +0.1
759,496 + -1.3
759,639 - Psyr_0670 0.28 -0.8
759,639 - Psyr_0670 0.28 -0.7
759,676 + Psyr_0670 0.33 +4.0
759,676 + Psyr_0670 0.33 +1.5
759,676 + Psyr_0670 0.33 -0.1
759,676 + Psyr_0670 0.33 +0.4
759,677 - Psyr_0670 0.33 +3.3
760,020 + Psyr_0670 0.80 +0.1
760,020 + Psyr_0670 0.80 -0.2
760,021 - Psyr_0670 0.80 +3.3
760,021 - Psyr_0670 0.80 +0.1
760,021 - Psyr_0670 0.80 -1.4
760,119 - -0.8
760,207 + +4.3
760,207 + -1.4
760,207 + -3.9
760,258 + +3.4
760,258 + +4.0
760,258 + -1.3
760,258 + -3.1
760,258 + -0.8
760,258 + -1.7
760,258 + -1.5
760,258 + -0.4
760,259 - -2.6
760,259 - +1.4
760,259 - +0.4
760,287 + -0.5
760,297 + -1.4
760,424 - -0.3
760,435 + +3.3
760,435 + +0.0
760,435 + -0.9
760,435 + -1.6
760,435 + -1.2
760,435 + +0.4
760,435 + +1.0
760,435 + -0.2
760,435 + +1.1
760,435 + +3.3
760,436 - +0.4
760,436 - +1.7
760,436 - -0.9
760,436 - -0.8
760,436 - -2.0
760,436 - +1.7
760,436 - -0.5
760,436 - -0.5
760,441 + -0.4
760,441 + -0.0
760,441 + +3.1
760,441 + +0.2
760,441 + -2.0
760,442 - -1.6
760,442 - +2.2
760,442 - +3.9
760,552 + Psyr_0671 0.11 -1.7
760,552 + Psyr_0671 0.11 -0.7
760,552 + Psyr_0671 0.11 +1.1
760,552 + Psyr_0671 0.11 -0.4
760,552 + Psyr_0671 0.11 +0.5
760,552 + Psyr_0671 0.11 +3.8
760,552 + Psyr_0671 0.11 +3.7
760,553 - Psyr_0671 0.11 -2.1
760,553 - Psyr_0671 0.11 -2.8
760,553 - Psyr_0671 0.11 -2.3
760,553 - Psyr_0671 0.11 -2.0
760,553 - Psyr_0671 0.11 -0.2
760,553 - Psyr_0671 0.11 -1.6
760,553 - Psyr_0671 0.11 -1.2
760,639 + Psyr_0671 0.20 +0.6
760,639 + Psyr_0671 0.20 +4.1
760,640 - Psyr_0671 0.21 +0.4
760,640 - Psyr_0671 0.21 +3.4
760,744 + Psyr_0671 0.32 +3.3
760,760 - Psyr_0671 0.33 -2.8
760,939 + Psyr_0671 0.53 +0.9
760,939 + Psyr_0671 0.53 -0.6
760,939 + Psyr_0671 0.53 -2.0
760,940 - Psyr_0671 0.53 +0.3
760,940 - Psyr_0671 0.53 -0.8

Or see this region's nucleotide sequence