Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0667 and Psyr_0668 are separated by 264 nucleotides Psyr_0668 and Psyr_0669 are separated by 111 nucleotides
Psyr_0667: Psyr_0667 - Periplasmic binding protein, at 755,559 to 756,479
_0667
Psyr_0668: Psyr_0668 - Sodium/calcium exchanger membrane region, at 756,744 to 757,847
_0668
Psyr_0669: Psyr_0669 - Amidohydrolase, at 757,959 to 759,314
_0669
Position (kb) 756
757
758 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 755.881 kb on + strand, within Psyr_0667 at 755.881 kb on + strand, within Psyr_0667 at 755.882 kb on - strand, within Psyr_0667 at 755.882 kb on - strand, within Psyr_0667 at 755.882 kb on - strand, within Psyr_0667 at 755.882 kb on - strand, within Psyr_0667 at 756.067 kb on + strand, within Psyr_0667 at 756.124 kb on + strand, within Psyr_0667 at 756.124 kb on + strand, within Psyr_0667 at 756.124 kb on + strand, within Psyr_0667 at 756.124 kb on + strand, within Psyr_0667 at 756.125 kb on - strand, within Psyr_0667 at 756.125 kb on - strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.189 kb on + strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.190 kb on - strand, within Psyr_0667 at 756.191 kb on + strand, within Psyr_0667 at 756.192 kb on - strand, within Psyr_0667 at 756.213 kb on + strand, within Psyr_0667 at 756.213 kb on + strand, within Psyr_0667 at 756.214 kb on - strand, within Psyr_0667 at 756.214 kb on - strand, within Psyr_0667 at 756.214 kb on - strand, within Psyr_0667 at 756.214 kb on - strand, within Psyr_0667 at 756.495 kb on + strand at 756.496 kb on - strand at 756.496 kb on - strand at 756.614 kb on + strand at 756.647 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.706 kb on + strand at 756.707 kb on - strand at 756.707 kb on - strand at 756.707 kb on - strand at 756.707 kb on - strand at 756.707 kb on - strand at 757.053 kb on + strand, within Psyr_0668 at 757.134 kb on + strand, within Psyr_0668 at 757.134 kb on + strand, within Psyr_0668 at 757.135 kb on - strand, within Psyr_0668 at 757.135 kb on - strand, within Psyr_0668 at 757.135 kb on - strand, within Psyr_0668 at 757.135 kb on - strand, within Psyr_0668 at 757.135 kb on - strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.158 kb on + strand, within Psyr_0668 at 757.159 kb on - strand, within Psyr_0668 at 757.159 kb on - strand, within Psyr_0668 at 757.159 kb on - strand, within Psyr_0668 at 757.201 kb on + strand, within Psyr_0668 at 757.236 kb on + strand, within Psyr_0668 at 757.236 kb on + strand, within Psyr_0668 at 757.272 kb on + strand, within Psyr_0668 at 757.273 kb on - strand, within Psyr_0668 at 757.273 kb on - strand, within Psyr_0668 at 757.273 kb on - strand, within Psyr_0668 at 757.273 kb on - strand, within Psyr_0668 at 757.273 kb on - strand, within Psyr_0668 at 757.311 kb on + strand, within Psyr_0668 at 757.311 kb on + strand, within Psyr_0668 at 757.311 kb on + strand, within Psyr_0668 at 757.323 kb on + strand, within Psyr_0668 at 757.324 kb on - strand, within Psyr_0668 at 757.324 kb on - strand, within Psyr_0668 at 757.324 kb on - strand, within Psyr_0668 at 757.674 kb on + strand, within Psyr_0668 at 757.674 kb on + strand, within Psyr_0668 at 757.675 kb on - strand, within Psyr_0668 at 757.675 kb on - strand, within Psyr_0668 at 757.675 kb on - strand, within Psyr_0668 at 757.852 kb on + strand at 757.852 kb on + strand at 757.853 kb on - strand at 757.944 kb on + strand at 758.293 kb on + strand, within Psyr_0669 at 758.293 kb on + strand, within Psyr_0669 at 758.294 kb on - strand, within Psyr_0669 at 758.294 kb on - strand, within Psyr_0669 at 758.453 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.535 kb on + strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.536 kb on - strand, within Psyr_0669 at 758.548 kb on + strand, within Psyr_0669 at 758.548 kb on + strand, within Psyr_0669 at 758.548 kb on + strand, within Psyr_0669 at 758.548 kb on + strand, within Psyr_0669 at 758.549 kb on - strand, within Psyr_0669 at 758.743 kb on + strand, within Psyr_0669 at 758.744 kb on - strand, within Psyr_0669 at 758.744 kb on - strand, within Psyr_0669 at 758.744 kb on - strand, within Psyr_0669 at 758.744 kb on - strand, within Psyr_0669 at 758.744 kb on - strand, within Psyr_0669
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 755,881 + Psyr_0667 0.35 +3.4 755,881 + Psyr_0667 0.35 +2.1 755,882 - Psyr_0667 0.35 +0.7 755,882 - Psyr_0667 0.35 +3.4 755,882 - Psyr_0667 0.35 +0.1 755,882 - Psyr_0667 0.35 +1.7 756,067 + Psyr_0667 0.55 +3.5 756,124 + Psyr_0667 0.61 +0.9 756,124 + Psyr_0667 0.61 -4.8 756,124 + Psyr_0667 0.61 +2.4 756,124 + Psyr_0667 0.61 -3.5 756,125 - Psyr_0667 0.61 +3.8 756,125 - Psyr_0667 0.61 +3.3 756,189 + Psyr_0667 0.68 +3.3 756,189 + Psyr_0667 0.68 +0.6 756,189 + Psyr_0667 0.68 -1.3 756,189 + Psyr_0667 0.68 -0.8 756,189 + Psyr_0667 0.68 +2.7 756,189 + Psyr_0667 0.68 +0.9 756,189 + Psyr_0667 0.68 +4.0 756,189 + Psyr_0667 0.68 -0.5 756,189 + Psyr_0667 0.68 -3.0 756,189 + Psyr_0667 0.68 +3.9 756,189 + Psyr_0667 0.68 -1.0 756,189 + Psyr_0667 0.68 -0.3 756,189 + Psyr_0667 0.68 -2.0 756,189 + Psyr_0667 0.68 +3.5 756,189 + Psyr_0667 0.68 +0.9 756,190 - Psyr_0667 0.69 -0.1 756,190 - Psyr_0667 0.69 +1.3 756,190 - Psyr_0667 0.69 +0.7 756,190 - Psyr_0667 0.69 -1.9 756,190 - Psyr_0667 0.69 +0.0 756,190 - Psyr_0667 0.69 -0.5 756,190 - Psyr_0667 0.69 -2.0 756,190 - Psyr_0667 0.69 +1.3 756,190 - Psyr_0667 0.69 -0.6 756,190 - Psyr_0667 0.69 -1.7 756,190 - Psyr_0667 0.69 +1.0 756,190 - Psyr_0667 0.69 -0.3 756,190 - Psyr_0667 0.69 -0.1 756,190 - Psyr_0667 0.69 -0.4 756,191 + Psyr_0667 0.69 +1.1 756,192 - Psyr_0667 0.69 -2.2 756,213 + Psyr_0667 0.71 -1.1 756,213 + Psyr_0667 0.71 +4.3 756,214 - Psyr_0667 0.71 +3.3 756,214 - Psyr_0667 0.71 +2.4 756,214 - Psyr_0667 0.71 +2.4 756,214 - Psyr_0667 0.71 -0.2 756,495 + -1.4 756,496 - +4.4 756,496 - -0.2 756,614 + -1.6 756,647 + +3.1 756,706 + -1.6 756,706 + +0.7 756,706 + -0.4 756,706 + -0.5 756,706 + -2.2 756,706 + -0.6 756,706 + +2.7 756,706 + -0.9 756,706 + +3.4 756,706 + +1.7 756,706 + -0.4 756,706 + -2.0 756,706 + +2.7 756,706 + +0.5 756,706 + -1.3 756,707 - -1.1 756,707 - +3.1 756,707 - +3.3 756,707 - +3.3 756,707 - -0.8 757,053 + Psyr_0668 0.28 -0.9 757,134 + Psyr_0668 0.35 +3.4 757,134 + Psyr_0668 0.35 -1.0 757,135 - Psyr_0668 0.35 -0.4 757,135 - Psyr_0668 0.35 -1.5 757,135 - Psyr_0668 0.35 +4.1 757,135 - Psyr_0668 0.35 -2.0 757,135 - Psyr_0668 0.35 -0.5 757,158 + Psyr_0668 0.38 +0.3 757,158 + Psyr_0668 0.38 -0.3 757,158 + Psyr_0668 0.38 -1.1 757,158 + Psyr_0668 0.38 +0.2 757,158 + Psyr_0668 0.38 +3.4 757,159 - Psyr_0668 0.38 +1.7 757,159 - Psyr_0668 0.38 +1.7 757,159 - Psyr_0668 0.38 -1.4 757,201 + Psyr_0668 0.41 -4.3 757,236 + Psyr_0668 0.45 +0.4 757,236 + Psyr_0668 0.45 +2.4 757,272 + Psyr_0668 0.48 +0.4 757,273 - Psyr_0668 0.48 +1.7 757,273 - Psyr_0668 0.48 +1.7 757,273 - Psyr_0668 0.48 +3.1 757,273 - Psyr_0668 0.48 +2.4 757,273 - Psyr_0668 0.48 +4.2 757,311 + Psyr_0668 0.51 +1.4 757,311 + Psyr_0668 0.51 -1.7 757,311 + Psyr_0668 0.51 -0.8 757,323 + Psyr_0668 0.52 +3.3 757,324 - Psyr_0668 0.53 -1.0 757,324 - Psyr_0668 0.53 +2.9 757,324 - Psyr_0668 0.53 +3.6 757,674 + Psyr_0668 0.84 +0.1 757,674 + Psyr_0668 0.84 -0.5 757,675 - Psyr_0668 0.84 -0.5 757,675 - Psyr_0668 0.84 -1.1 757,675 - Psyr_0668 0.84 +2.1 757,852 + -0.3 757,852 + -1.2 757,853 - -2.4 757,944 + +1.3 758,293 + Psyr_0669 0.25 +2.9 758,293 + Psyr_0669 0.25 +4.6 758,294 - Psyr_0669 0.25 +1.1 758,294 - Psyr_0669 0.25 -1.7 758,453 + Psyr_0669 0.36 +3.6 758,535 + Psyr_0669 0.42 +1.3 758,535 + Psyr_0669 0.42 -0.4 758,535 + Psyr_0669 0.42 -0.3 758,535 + Psyr_0669 0.42 -0.3 758,535 + Psyr_0669 0.42 +3.4 758,535 + Psyr_0669 0.42 +1.7 758,535 + Psyr_0669 0.42 -1.2 758,535 + Psyr_0669 0.42 -1.5 758,536 - Psyr_0669 0.43 +0.6 758,536 - Psyr_0669 0.43 +4.9 758,536 - Psyr_0669 0.43 -2.2 758,536 - Psyr_0669 0.43 +0.9 758,548 + Psyr_0669 0.43 -0.0 758,548 + Psyr_0669 0.43 +0.1 758,548 + Psyr_0669 0.43 -1.6 758,548 + Psyr_0669 0.43 +0.1 758,549 - Psyr_0669 0.44 +0.4 758,743 + Psyr_0669 0.58 -0.6 758,744 - Psyr_0669 0.58 -1.8 758,744 - Psyr_0669 0.58 -1.0 758,744 - Psyr_0669 0.58 +1.7 758,744 - Psyr_0669 0.58 +0.3 758,744 - Psyr_0669 0.58 +0.2
Or see this region's nucleotide sequence