Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0612

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0610 and Psyr_0611 overlap by 4 nucleotidesPsyr_0611 and Psyr_0612 are separated by 66 nucleotidesPsyr_0612 and Psyr_0613 are separated by 1 nucleotidesPsyr_0613 and Psyr_0614 are separated by 7 nucleotides Psyr_0610: Psyr_0610 - ABC-2, at 700,534 to 701,310 _0610 Psyr_0611: Psyr_0611 - ABC transporter, at 701,307 to 702,011 _0611 Psyr_0612: Psyr_0612 - Nucleotidyl transferase, at 702,078 to 702,839 _0612 Psyr_0613: Psyr_0613 - conserved hypothetical protein, at 702,841 to 703,455 _0613 Psyr_0614: Psyr_0614 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 703,463 to 704,101 _0614 Position (kb) 702 703Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.165 kb on - strand, within Psyr_0610at 701.165 kb on - strand, within Psyr_0610at 701.179 kb on - strand, within Psyr_0610at 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.307 kb on - strandat 701.307 kb on - strandat 701.307 kb on - strandat 701.307 kb on - strandat 701.452 kb on + strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.516 kb on + strand, within Psyr_0611at 701.516 kb on + strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.602 kb on + strand, within Psyr_0611at 701.642 kb on + strand, within Psyr_0611at 701.643 kb on - strand, within Psyr_0611at 701.757 kb on + strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.965 kb on - strandat 702.071 kb on + strandat 702.072 kb on - strandat 702.072 kb on - strandat 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.233 kb on + strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.426 kb on - strand, within Psyr_0612at 702.426 kb on - strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.435 kb on + strand, within Psyr_0612at 702.563 kb on + strand, within Psyr_0612at 702.563 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.687 kb on + strand, within Psyr_0612at 702.688 kb on - strand, within Psyr_0612at 702.688 kb on - strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.727 kb on - strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.888 kb on + strandat 702.888 kb on + strandat 702.888 kb on + strandat 702.889 kb on - strandat 703.120 kb on - strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.416 kb on + strandat 703.417 kb on - strandat 703.523 kb on + strandat 703.523 kb on + strandat 703.523 kb on + strandat 703.524 kb on - strandat 703.691 kb on + strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.742 kb on + strand, within Psyr_0614at 703.772 kb on + strand, within Psyr_0614

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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701,099 + Psyr_0610 0.73 -0.3
701,099 + Psyr_0610 0.73 -2.0
701,099 + Psyr_0610 0.73 -3.1
701,099 + Psyr_0610 0.73 +3.9
701,099 + Psyr_0610 0.73 +0.1
701,099 + Psyr_0610 0.73 +4.2
701,099 + Psyr_0610 0.73 +3.4
701,099 + Psyr_0610 0.73 -3.0
701,100 - Psyr_0610 0.73 -2.0
701,100 - Psyr_0610 0.73 -0.2
701,100 - Psyr_0610 0.73 -1.2
701,100 - Psyr_0610 0.73 -1.5
701,146 + Psyr_0610 0.79 +4.5
701,146 + Psyr_0610 0.79 +2.1
701,146 + Psyr_0610 0.79 +1.4
701,146 + Psyr_0610 0.79 -0.5
701,147 - Psyr_0610 0.79 +3.1
701,147 - Psyr_0610 0.79 +2.4
701,147 - Psyr_0610 0.79 -1.9
701,147 - Psyr_0610 0.79 -0.7
701,164 + Psyr_0610 0.81 +3.8
701,165 - Psyr_0610 0.81 -1.8
701,165 - Psyr_0610 0.81 +2.4
701,179 - Psyr_0610 0.83 -2.0
701,302 + +0.4
701,302 + -2.4
701,302 + -0.6
701,303 - +0.4
701,303 - -1.4
701,303 - +1.7
701,303 - -0.5
701,303 - -0.7
701,303 - +2.4
701,303 - -2.7
701,306 + -0.6
701,306 + -0.3
701,306 + +2.7
701,307 - +2.4
701,307 - +4.7
701,307 - +2.7
701,307 - -1.4
701,452 + Psyr_0611 0.21 -0.9
701,453 - Psyr_0611 0.21 +2.1
701,453 - Psyr_0611 0.21 +0.1
701,453 - Psyr_0611 0.21 +3.3
701,453 - Psyr_0611 0.21 +4.3
701,453 - Psyr_0611 0.21 -1.4
701,516 + Psyr_0611 0.30 -5.2
701,516 + Psyr_0611 0.30 -0.5
701,517 - Psyr_0611 0.30 +1.7
701,517 - Psyr_0611 0.30 -0.1
701,517 - Psyr_0611 0.30 -0.6
701,517 - Psyr_0611 0.30 -3.3
701,517 - Psyr_0611 0.30 +0.9
701,602 + Psyr_0611 0.42 -1.6
701,642 + Psyr_0611 0.48 -1.2
701,643 - Psyr_0611 0.48 -0.5
701,757 + Psyr_0611 0.64 +1.7
701,773 - Psyr_0611 0.66 -0.1
701,773 - Psyr_0611 0.66 -0.9
701,773 - Psyr_0611 0.66 +1.8
701,773 - Psyr_0611 0.66 +1.7
701,773 - Psyr_0611 0.66 -2.0
701,773 - Psyr_0611 0.66 -1.1
701,965 - +0.1
702,071 + -2.2
702,072 - +1.1
702,072 - -2.5
702,163 + Psyr_0612 0.11 -1.5
702,163 + Psyr_0612 0.11 -0.7
702,163 + Psyr_0612 0.11 -0.5
702,163 + Psyr_0612 0.11 -1.1
702,163 + Psyr_0612 0.11 -0.9
702,163 + Psyr_0612 0.11 -1.6
702,164 - Psyr_0612 0.11 +1.5
702,164 - Psyr_0612 0.11 +3.1
702,164 - Psyr_0612 0.11 -2.5
702,164 - Psyr_0612 0.11 +2.7
702,233 + Psyr_0612 0.20 -1.4
702,233 + Psyr_0612 0.20 -3.6
702,233 + Psyr_0612 0.20 +0.1
702,233 + Psyr_0612 0.20 +4.3
702,234 - Psyr_0612 0.20 +1.1
702,234 - Psyr_0612 0.20 +2.4
702,351 + Psyr_0612 0.36 -2.1
702,351 + Psyr_0612 0.36 -2.1
702,351 + Psyr_0612 0.36 -1.8
702,351 + Psyr_0612 0.36 +2.9
702,352 - Psyr_0612 0.36 -1.2
702,352 - Psyr_0612 0.36 -0.5
702,352 - Psyr_0612 0.36 -1.9
702,352 - Psyr_0612 0.36 -0.4
702,352 - Psyr_0612 0.36 +0.8
702,425 + Psyr_0612 0.46 +1.1
702,425 + Psyr_0612 0.46 -0.0
702,425 + Psyr_0612 0.46 +0.5
702,426 - Psyr_0612 0.46 +2.1
702,426 - Psyr_0612 0.46 -0.6
702,427 + Psyr_0612 0.46 +1.1
702,427 + Psyr_0612 0.46 -0.8
702,427 + Psyr_0612 0.46 -1.1
702,427 + Psyr_0612 0.46 +1.6
702,427 + Psyr_0612 0.46 +3.3
702,427 + Psyr_0612 0.46 -0.9
702,427 + Psyr_0612 0.46 -0.9
702,428 - Psyr_0612 0.46 -1.8
702,428 - Psyr_0612 0.46 +0.1
702,428 - Psyr_0612 0.46 -2.1
702,428 - Psyr_0612 0.46 +2.7
702,428 - Psyr_0612 0.46 +0.9
702,428 - Psyr_0612 0.46 -1.0
702,428 - Psyr_0612 0.46 -1.0
702,428 - Psyr_0612 0.46 +0.1
702,428 - Psyr_0612 0.46 +0.1
702,428 - Psyr_0612 0.46 +1.7
702,435 + Psyr_0612 0.47 +1.7
702,563 + Psyr_0612 0.64 +0.1
702,563 + Psyr_0612 0.64 +0.6
702,591 + Psyr_0612 0.67 +0.0
702,591 + Psyr_0612 0.67 +2.9
702,591 + Psyr_0612 0.67 +2.4
702,591 + Psyr_0612 0.67 +0.3
702,591 + Psyr_0612 0.67 -1.9
702,591 + Psyr_0612 0.67 -2.4
702,591 + Psyr_0612 0.67 +2.7
702,592 - Psyr_0612 0.67 +1.1
702,592 - Psyr_0612 0.67 -4.1
702,592 - Psyr_0612 0.67 -0.5
702,592 - Psyr_0612 0.67 -1.2
702,592 - Psyr_0612 0.67 +2.4
702,592 - Psyr_0612 0.67 +2.4
702,592 - Psyr_0612 0.67 -3.9
702,594 - Psyr_0612 0.68 -3.8
702,594 - Psyr_0612 0.68 -1.8
702,672 + Psyr_0612 0.78 +2.9
702,672 + Psyr_0612 0.78 -1.9
702,673 - Psyr_0612 0.78 +4.1
702,673 - Psyr_0612 0.78 -0.8
702,673 - Psyr_0612 0.78 +0.1
702,687 + Psyr_0612 0.80 -0.4
702,688 - Psyr_0612 0.80 -1.1
702,688 - Psyr_0612 0.80 -2.4
702,726 + Psyr_0612 0.85 -1.6
702,727 - Psyr_0612 0.85 -1.3
702,756 + Psyr_0612 0.89 -1.4
702,756 + Psyr_0612 0.89 +3.4
702,756 + Psyr_0612 0.89 +1.7
702,756 + Psyr_0612 0.89 +1.1
702,756 + Psyr_0612 0.89 +2.1
702,756 + Psyr_0612 0.89 -1.5
702,756 + Psyr_0612 0.89 -0.3
702,757 - Psyr_0612 0.89 +2.4
702,757 - Psyr_0612 0.89 +3.3
702,757 - Psyr_0612 0.89 +0.5
702,757 - Psyr_0612 0.89 -0.4
702,757 - Psyr_0612 0.89 -1.9
702,757 - Psyr_0612 0.89 +0.4
702,757 - Psyr_0612 0.89 +2.4
702,757 - Psyr_0612 0.89 +0.1
702,757 - Psyr_0612 0.89 +0.1
702,757 - Psyr_0612 0.89 -1.2
702,757 - Psyr_0612 0.89 +2.1
702,888 + -0.3
702,888 + +1.4
702,888 + +0.1
702,889 - -1.0
703,120 - Psyr_0613 0.45 -0.6
703,189 + Psyr_0613 0.57 +0.2
703,189 + Psyr_0613 0.57 -0.1
703,189 + Psyr_0613 0.57 +4.3
703,189 + Psyr_0613 0.57 +0.2
703,189 + Psyr_0613 0.57 +2.2
703,189 + Psyr_0613 0.57 -0.2
703,190 - Psyr_0613 0.57 +1.1
703,190 - Psyr_0613 0.57 +0.7
703,190 - Psyr_0613 0.57 -2.7
703,190 - Psyr_0613 0.57 -0.5
703,190 - Psyr_0613 0.57 +0.5
703,190 - Psyr_0613 0.57 +1.7
703,190 - Psyr_0613 0.57 -0.7
703,416 + +1.7
703,417 - -2.3
703,523 + -0.8
703,523 + +0.1
703,523 + +0.1
703,524 - -3.1
703,691 + Psyr_0614 0.36 -2.7
703,692 - Psyr_0614 0.36 +1.7
703,692 - Psyr_0614 0.36 -2.4
703,742 + Psyr_0614 0.44 -2.1
703,772 + Psyr_0614 0.48 +0.5

Or see this region's nucleotide sequence