Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0578 and Psyr_RNA2 are separated by 106 nucleotides Psyr_RNA2 and Psyr_RNA3 are separated by 160 nucleotides Psyr_RNA3 and Psyr_0579 are separated by 225 nucleotides Psyr_0579 and Psyr_0580 overlap by 4 nucleotides
Psyr_0578: Psyr_0578 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 657,338 to 659,272
_0578
Psyr_RNA2: Psyr_RNA2 - tRNA-Leu, at 659,379 to 659,465
_RNA2
Psyr_RNA3: Psyr_RNA3 - tRNA-Leu, at 659,626 to 659,712
_RNA3
Psyr_0579: Psyr_0579 - RNAse R, at 659,938 to 662,571
_0579
Psyr_0580: Psyr_0580 - 23S rRNA Gm-2251 2'-O-methyltransferase, at 662,568 to 663,323
_0580
Position (kb) 659
660
661
662
663 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 659.019 kb on + strand, within Psyr_0578 at 659.020 kb on - strand, within Psyr_0578 at 659.482 kb on - strand at 659.502 kb on + strand at 659.502 kb on + strand at 659.504 kb on + strand at 659.505 kb on - strand at 659.505 kb on - strand at 659.525 kb on + strand at 659.543 kb on + strand at 659.543 kb on + strand at 659.543 kb on + strand at 659.544 kb on - strand at 659.547 kb on - strand at 659.610 kb on - strand at 659.610 kb on - strand at 659.610 kb on - strand at 659.610 kb on - strand at 659.615 kb on - strand at 659.615 kb on - strand at 659.615 kb on - strand at 659.750 kb on - strand at 659.751 kb on + strand at 659.751 kb on + strand at 659.752 kb on - strand at 659.765 kb on + strand at 659.765 kb on + strand at 659.765 kb on + strand at 659.765 kb on + strand at 659.766 kb on - strand at 659.766 kb on - strand at 659.766 kb on - strand at 659.766 kb on - strand at 659.895 kb on + strand at 659.895 kb on + strand at 659.895 kb on + strand at 659.896 kb on - strand at 659.896 kb on - strand at 659.906 kb on - strand at 659.912 kb on + strand at 659.912 kb on + strand at 659.912 kb on + strand at 659.913 kb on - strand at 659.913 kb on - strand at 659.913 kb on - strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.915 kb on - strand at 659.915 kb on - strand at 659.915 kb on - strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.936 kb on + strand at 659.936 kb on + strand at 659.936 kb on + strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.175 kb on + strand at 660.175 kb on + strand at 660.176 kb on - strand at 660.176 kb on - strand at 660.176 kb on - strand at 660.404 kb on + strand, within Psyr_0579 at 660.405 kb on - strand, within Psyr_0579 at 660.415 kb on + strand, within Psyr_0579 at 660.415 kb on + strand, within Psyr_0579 at 660.415 kb on + strand, within Psyr_0579 at 660.415 kb on + strand, within Psyr_0579 at 660.416 kb on - strand, within Psyr_0579 at 660.598 kb on + strand, within Psyr_0579 at 660.598 kb on + strand, within Psyr_0579 at 660.598 kb on + strand, within Psyr_0579 at 660.598 kb on + strand, within Psyr_0579 at 660.598 kb on + strand, within Psyr_0579 at 660.599 kb on - strand, within Psyr_0579 at 660.599 kb on - strand, within Psyr_0579 at 660.599 kb on - strand, within Psyr_0579 at 660.599 kb on - strand, within Psyr_0579 at 660.599 kb on - strand, within Psyr_0579 at 660.599 kb on - strand, within Psyr_0579 at 660.636 kb on + strand, within Psyr_0579 at 660.636 kb on + strand, within Psyr_0579 at 660.637 kb on - strand, within Psyr_0579 at 660.637 kb on - strand, within Psyr_0579 at 660.637 kb on - strand, within Psyr_0579 at 660.637 kb on - strand, within Psyr_0579 at 660.637 kb on - strand, within Psyr_0579 at 660.637 kb on - strand, within Psyr_0579 at 660.637 kb on - strand, within Psyr_0579 at 660.640 kb on + strand, within Psyr_0579 at 660.854 kb on - strand, within Psyr_0579 at 660.854 kb on - strand, within Psyr_0579 at 660.873 kb on - strand, within Psyr_0579 at 660.880 kb on + strand, within Psyr_0579 at 660.881 kb on - strand, within Psyr_0579 at 660.937 kb on + strand, within Psyr_0579 at 660.938 kb on - strand, within Psyr_0579 at 661.070 kb on - strand, within Psyr_0579 at 661.078 kb on + strand, within Psyr_0579 at 661.079 kb on - strand, within Psyr_0579 at 661.114 kb on + strand, within Psyr_0579 at 661.115 kb on - strand, within Psyr_0579 at 661.115 kb on - strand, within Psyr_0579 at 661.213 kb on + strand, within Psyr_0579 at 661.213 kb on + strand, within Psyr_0579 at 661.213 kb on + strand, within Psyr_0579 at 661.214 kb on - strand, within Psyr_0579 at 661.222 kb on + strand, within Psyr_0579 at 661.222 kb on + strand, within Psyr_0579 at 661.222 kb on + strand, within Psyr_0579 at 661.222 kb on + strand, within Psyr_0579 at 661.222 kb on + strand, within Psyr_0579 at 661.223 kb on - strand, within Psyr_0579 at 661.223 kb on - strand, within Psyr_0579 at 661.223 kb on - strand, within Psyr_0579 at 661.223 kb on - strand, within Psyr_0579 at 661.223 kb on - strand, within Psyr_0579 at 661.229 kb on + strand, within Psyr_0579 at 661.229 kb on + strand, within Psyr_0579 at 661.229 kb on + strand, within Psyr_0579 at 661.230 kb on - strand, within Psyr_0579 at 661.339 kb on - strand, within Psyr_0579 at 661.429 kb on + strand, within Psyr_0579 at 661.430 kb on - strand, within Psyr_0579 at 661.579 kb on + strand, within Psyr_0579 at 661.580 kb on - strand, within Psyr_0579 at 661.628 kb on - strand, within Psyr_0579 at 661.663 kb on + strand, within Psyr_0579 at 661.672 kb on + strand, within Psyr_0579 at 661.811 kb on - strand, within Psyr_0579 at 661.895 kb on + strand, within Psyr_0579 at 661.918 kb on + strand, within Psyr_0579 at 661.918 kb on + strand, within Psyr_0579 at 661.919 kb on - strand, within Psyr_0579 at 661.919 kb on - strand, within Psyr_0579 at 661.919 kb on - strand, within Psyr_0579 at 661.968 kb on - strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.005 kb on + strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.006 kb on - strand, within Psyr_0579 at 662.047 kb on + strand, within Psyr_0579 at 662.048 kb on - strand, within Psyr_0579 at 662.051 kb on - strand, within Psyr_0579 at 662.227 kb on - strand, within Psyr_0579 at 662.421 kb on + strand at 662.422 kb on - strand at 662.550 kb on + strand at 662.605 kb on + strand at 662.605 kb on + strand at 662.606 kb on - strand at 662.614 kb on + strand at 662.614 kb on + strand at 662.614 kb on + strand at 662.615 kb on - strand at 662.915 kb on + strand, within Psyr_0580 at 662.915 kb on + strand, within Psyr_0580 at 663.051 kb on - strand, within Psyr_0580 at 663.121 kb on - strand, within Psyr_0580 at 663.152 kb on + strand, within Psyr_0580 at 663.207 kb on + strand, within Psyr_0580 at 663.208 kb on - strand, within Psyr_0580 at 663.321 kb on + strand at 663.324 kb on + strand at 663.324 kb on + strand at 663.324 kb on + strand at 663.324 kb on + strand at 663.352 kb on + strand at 663.352 kb on + strand at 663.352 kb on + strand at 663.352 kb on + strand at 663.352 kb on + strand at 663.352 kb on + strand at 663.353 kb on - strand at 663.353 kb on - strand at 663.353 kb on - strand at 663.353 kb on - strand at 663.359 kb on + strand at 663.359 kb on + strand at 663.359 kb on + strand at 663.359 kb on + strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.360 kb on - strand at 663.376 kb on + strand at 663.376 kb on + strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.377 kb on - strand at 663.382 kb on + strand at 663.383 kb on - strand at 663.383 kb on - strand at 663.421 kb on + strand at 663.422 kb on - strand at 663.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 659,019 + Psyr_0578 0.87 -1.8 659,020 - Psyr_0578 0.87 +3.1 659,482 - +0.3 659,502 + +0.4 659,502 + +1.2 659,504 + -1.6 659,505 - +4.3 659,505 - +2.7 659,525 + +0.5 659,543 + -2.3 659,543 + +2.3 659,543 + -2.2 659,544 - +3.5 659,547 - -2.2 659,610 - -0.7 659,610 - -3.1 659,610 - -0.0 659,610 - +0.7 659,615 - -1.1 659,615 - -0.3 659,615 - +2.7 659,750 - -0.4 659,751 + +2.1 659,751 + -2.3 659,752 - +3.4 659,765 + +0.1 659,765 + +0.1 659,765 + -1.0 659,765 + -1.4 659,766 - +0.2 659,766 - +3.7 659,766 - -2.6 659,766 - +1.7 659,895 + +3.3 659,895 + +4.3 659,895 + -0.1 659,896 - +0.1 659,896 - +1.1 659,906 - +2.1 659,912 + -1.2 659,912 + -0.3 659,912 + -1.7 659,913 - -4.7 659,913 - -5.2 659,913 - +0.1 659,914 + +1.1 659,914 + -2.1 659,914 + +4.4 659,914 + -2.0 659,914 + +0.6 659,914 + +0.4 659,914 + +1.1 659,915 - -1.9 659,915 - -3.2 659,915 - +0.1 659,916 + +3.9 659,916 + +0.3 659,916 + -1.9 659,916 + +2.7 659,916 + -0.6 659,916 + +2.1 659,916 + +4.1 659,916 + +1.9 659,916 + -0.1 659,916 + +0.9 659,916 + +2.9 659,916 + +4.0 659,916 + -3.5 659,916 + -0.5 659,916 + -0.8 659,916 + +0.1 659,916 + -1.5 659,916 + +1.3 659,916 + -0.6 659,916 + -1.1 659,916 + -1.6 659,916 + -0.9 659,917 - +0.1 659,917 - +1.1 659,917 - +0.1 659,917 - -1.2 659,917 - +0.1 659,917 - +1.7 659,917 - -3.7 659,917 - +2.7 659,917 - -1.2 659,917 - -0.9 659,917 - +1.1 659,917 - -3.9 659,917 - -3.5 659,917 - -1.3 659,917 - +1.1 659,917 - +0.1 659,917 - -3.6 659,918 + -0.9 659,918 + +2.9 659,918 + +3.8 659,918 + +3.9 659,918 + -1.7 659,918 + +0.3 659,918 + +2.1 659,918 + -0.4 659,918 + -0.2 659,918 + -1.5 659,918 + +2.1 659,918 + -3.4 659,918 + +0.3 659,918 + +2.4 659,918 + +2.1 659,918 + +0.6 659,918 + +2.7 659,919 - +1.1 659,919 - +0.1 659,919 - +0.1 659,919 - -1.9 659,919 - +0.1 659,919 - -3.2 659,919 - -4.2 659,919 - -4.5 659,919 - -3.6 659,936 + +3.9 659,936 + +2.7 659,936 + +2.1 660,158 - -4.4 660,158 - -2.1 660,158 - -4.1 660,158 - -4.3 660,175 + +0.1 660,175 + -2.5 660,176 - -1.7 660,176 - +2.4 660,176 - +0.1 660,404 + Psyr_0579 0.18 +1.7 660,405 - Psyr_0579 0.18 -3.5 660,415 + Psyr_0579 0.18 +1.1 660,415 + Psyr_0579 0.18 -3.5 660,415 + Psyr_0579 0.18 -2.2 660,415 + Psyr_0579 0.18 +0.1 660,416 - Psyr_0579 0.18 -3.2 660,598 + Psyr_0579 0.25 -3.1 660,598 + Psyr_0579 0.25 +2.7 660,598 + Psyr_0579 0.25 -3.1 660,598 + Psyr_0579 0.25 +0.1 660,598 + Psyr_0579 0.25 -3.2 660,599 - Psyr_0579 0.25 -3.9 660,599 - Psyr_0579 0.25 +1.1 660,599 - Psyr_0579 0.25 +0.1 660,599 - Psyr_0579 0.25 +0.1 660,599 - Psyr_0579 0.25 -2.6 660,599 - Psyr_0579 0.25 -3.0 660,636 + Psyr_0579 0.26 -4.0 660,636 + Psyr_0579 0.26 -2.9 660,637 - Psyr_0579 0.27 -2.9 660,637 - Psyr_0579 0.27 +0.1 660,637 - Psyr_0579 0.27 +0.1 660,637 - Psyr_0579 0.27 -0.3 660,637 - Psyr_0579 0.27 -2.9 660,637 - Psyr_0579 0.27 +0.1 660,637 - Psyr_0579 0.27 +0.1 660,640 + Psyr_0579 0.27 -2.1 660,854 - Psyr_0579 0.35 -2.2 660,854 - Psyr_0579 0.35 -3.4 660,873 - Psyr_0579 0.35 +2.1 660,880 + Psyr_0579 0.36 +1.1 660,881 - Psyr_0579 0.36 +0.1 660,937 + Psyr_0579 0.38 +1.1 660,938 - Psyr_0579 0.38 +0.1 661,070 - Psyr_0579 0.43 +1.7 661,078 + Psyr_0579 0.43 +1.1 661,079 - Psyr_0579 0.43 +0.1 661,114 + Psyr_0579 0.45 +0.1 661,115 - Psyr_0579 0.45 -2.7 661,115 - Psyr_0579 0.45 -4.8 661,213 + Psyr_0579 0.48 -3.1 661,213 + Psyr_0579 0.48 -1.5 661,213 + Psyr_0579 0.48 -2.8 661,214 - Psyr_0579 0.48 -2.6 661,222 + Psyr_0579 0.49 -3.6 661,222 + Psyr_0579 0.49 -3.9 661,222 + Psyr_0579 0.49 -4.9 661,222 + Psyr_0579 0.49 +2.1 661,222 + Psyr_0579 0.49 +0.5 661,223 - Psyr_0579 0.49 +0.1 661,223 - Psyr_0579 0.49 +3.3 661,223 - Psyr_0579 0.49 +0.1 661,223 - Psyr_0579 0.49 +1.1 661,223 - Psyr_0579 0.49 -4.4 661,229 + Psyr_0579 0.49 +1.1 661,229 + Psyr_0579 0.49 -3.4 661,229 + Psyr_0579 0.49 +0.1 661,230 - Psyr_0579 0.49 -3.4 661,339 - Psyr_0579 0.53 +0.1 661,429 + Psyr_0579 0.57 +0.1 661,430 - Psyr_0579 0.57 -4.4 661,579 + Psyr_0579 0.62 -1.5 661,580 - Psyr_0579 0.62 +1.1 661,628 - Psyr_0579 0.64 -0.7 661,663 + Psyr_0579 0.65 +0.1 661,672 + Psyr_0579 0.66 -4.1 661,811 - Psyr_0579 0.71 -1.5 661,895 + Psyr_0579 0.74 +0.1 661,918 + Psyr_0579 0.75 +0.1 661,918 + Psyr_0579 0.75 +2.9 661,919 - Psyr_0579 0.75 +2.1 661,919 - Psyr_0579 0.75 -2.8 661,919 - Psyr_0579 0.75 +2.4 661,968 - Psyr_0579 0.77 +1.1 662,005 + Psyr_0579 0.78 +0.1 662,005 + Psyr_0579 0.78 +1.1 662,005 + Psyr_0579 0.78 -5.7 662,005 + Psyr_0579 0.78 +2.9 662,005 + Psyr_0579 0.78 +0.1 662,005 + Psyr_0579 0.78 +2.1 662,005 + Psyr_0579 0.78 +0.1 662,005 + Psyr_0579 0.78 -1.8 662,005 + Psyr_0579 0.78 -0.0 662,005 + Psyr_0579 0.78 +2.4 662,005 + Psyr_0579 0.78 -0.3 662,006 - Psyr_0579 0.79 -2.8 662,006 - Psyr_0579 0.79 +0.7 662,006 - Psyr_0579 0.79 -3.2 662,006 - Psyr_0579 0.79 -2.8 662,006 - Psyr_0579 0.79 +0.1 662,006 - Psyr_0579 0.79 +0.1 662,006 - Psyr_0579 0.79 -2.3 662,006 - Psyr_0579 0.79 -4.0 662,006 - Psyr_0579 0.79 -3.2 662,006 - Psyr_0579 0.79 +1.7 662,006 - Psyr_0579 0.79 +1.7 662,006 - Psyr_0579 0.79 -3.7 662,006 - Psyr_0579 0.79 +3.3 662,006 - Psyr_0579 0.79 -4.5 662,006 - Psyr_0579 0.79 +1.7 662,047 + Psyr_0579 0.80 -4.4 662,048 - Psyr_0579 0.80 -2.7 662,051 - Psyr_0579 0.80 +0.1 662,227 - Psyr_0579 0.87 -0.4 662,421 + -1.3 662,422 - +4.6 662,550 + +1.7 662,605 + +2.1 662,605 + +0.1 662,606 - -0.9 662,614 + +3.1 662,614 + +2.0 662,614 + -3.2 662,615 - +0.1 662,915 + Psyr_0580 0.46 -4.0 662,915 + Psyr_0580 0.46 -1.1 663,051 - Psyr_0580 0.64 -3.3 663,121 - Psyr_0580 0.73 +2.1 663,152 + Psyr_0580 0.77 +1.0 663,207 + Psyr_0580 0.85 +2.7 663,208 - Psyr_0580 0.85 +2.4 663,321 + +3.7 663,324 + -1.2 663,324 + -2.3 663,324 + +3.1 663,324 + +2.9 663,352 + -1.3 663,352 + -0.3 663,352 + -0.5 663,352 + +4.3 663,352 + +0.1 663,352 + -1.8 663,353 - -1.2 663,353 - +3.7 663,353 - -0.9 663,353 - -2.6 663,359 + +0.6 663,359 + +2.0 663,359 + +1.7 663,359 + +2.9 663,360 - -2.3 663,360 - +3.1 663,360 - +3.3 663,360 - +3.1 663,360 - -2.9 663,360 - -2.7 663,360 - +2.7 663,376 + +3.4 663,376 + +4.3 663,377 - +2.4 663,377 - +3.1 663,377 - -1.6 663,377 - -2.5 663,377 - -0.4 663,382 + -0.9 663,383 - -2.5 663,383 - -1.2 663,421 + +2.4 663,422 - -0.4 663,422 - +2.6
Or see this region's nucleotide sequence