Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0548

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0546 and Psyr_0547 are separated by 177 nucleotidesPsyr_0547 and Psyr_0548 overlap by 10 nucleotidesPsyr_0548 and Psyr_0549 are separated by 145 nucleotides Psyr_0546: Psyr_0546 - lipoprotein, putative, at 618,752 to 619,498 _0546 Psyr_0547: Psyr_0547 - Conserved hypothetical protein 52, at 619,676 to 620,323 _0547 Psyr_0548: Psyr_0548 - Protein of unknown function DUF1249, at 620,314 to 620,766 _0548 Psyr_0549: Psyr_0549 - Metallophosphoesterase, at 620,912 to 621,718 _0549 Position (kb) 620 621Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.561 kb on + strandat 619.562 kb on - strandat 619.562 kb on - strandat 619.594 kb on - strandat 619.620 kb on - strandat 619.620 kb on - strandat 619.664 kb on + strandat 619.750 kb on - strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.780 kb on + strand, within Psyr_0547at 619.780 kb on + strand, within Psyr_0547at 619.780 kb on + strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.886 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.313 kb on + strandat 620.314 kb on - strandat 620.314 kb on - strandat 620.327 kb on + strandat 620.328 kb on - strandat 620.328 kb on - strandat 620.328 kb on - strandat 620.387 kb on - strand, within Psyr_0548at 620.478 kb on - strand, within Psyr_0548at 620.510 kb on - strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.585 kb on - strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.648 kb on - strand, within Psyr_0548at 620.648 kb on - strand, within Psyr_0548at 620.648 kb on - strand, within Psyr_0548at 621.117 kb on - strand, within Psyr_0549at 621.448 kb on - strand, within Psyr_0549at 621.486 kb on + strand, within Psyr_0549at 621.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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619,537 + +3.4
619,537 + +2.7
619,537 + -1.9
619,537 + -1.0
619,537 + -1.8
619,537 + -0.8
619,537 + +3.3
619,537 + -2.9
619,537 + -2.1
619,537 + -1.0
619,537 + -2.6
619,537 + -1.2
619,538 - -1.3
619,538 - +1.1
619,538 - +3.6
619,538 - -4.9
619,538 - -1.5
619,538 - +0.6
619,541 + -0.7
619,541 + -2.4
619,541 + -0.9
619,541 + +2.1
619,541 + +1.1
619,541 + +0.5
619,541 + -2.2
619,542 - +3.1
619,542 - +3.9
619,542 - -0.8
619,542 - -2.8
619,542 - -1.4
619,542 - -0.3
619,542 - -4.6
619,542 - +0.3
619,542 - -0.7
619,561 + -0.7
619,562 - +0.2
619,562 - -1.3
619,594 - -1.4
619,620 - -1.1
619,620 - +3.0
619,664 + +4.6
619,750 - Psyr_0547 0.11 -0.6
619,778 + Psyr_0547 0.16 -1.1
619,778 + Psyr_0547 0.16 +1.1
619,778 + Psyr_0547 0.16 -1.2
619,778 + Psyr_0547 0.16 -0.5
619,778 + Psyr_0547 0.16 +0.5
619,778 + Psyr_0547 0.16 +1.1
619,778 + Psyr_0547 0.16 +1.8
619,778 + Psyr_0547 0.16 +4.5
619,778 + Psyr_0547 0.16 +1.1
619,778 + Psyr_0547 0.16 +1.1
619,778 + Psyr_0547 0.16 +2.9
619,779 - Psyr_0547 0.16 +3.1
619,779 - Psyr_0547 0.16 -0.2
619,779 - Psyr_0547 0.16 -1.6
619,779 - Psyr_0547 0.16 -1.0
619,779 - Psyr_0547 0.16 +0.7
619,779 - Psyr_0547 0.16 +1.1
619,779 - Psyr_0547 0.16 -0.2
619,780 + Psyr_0547 0.16 -0.3
619,780 + Psyr_0547 0.16 +3.7
619,780 + Psyr_0547 0.16 +5.1
619,781 - Psyr_0547 0.16 +4.8
619,781 - Psyr_0547 0.16 -1.4
619,781 - Psyr_0547 0.16 -1.6
619,781 - Psyr_0547 0.16 +2.4
619,781 - Psyr_0547 0.16 -1.7
619,886 + Psyr_0547 0.32 -1.6
620,081 + Psyr_0547 0.62 -1.2
620,081 + Psyr_0547 0.62 -2.6
620,081 + Psyr_0547 0.62 -1.6
620,081 + Psyr_0547 0.62 +1.7
620,081 + Psyr_0547 0.62 +3.8
620,081 + Psyr_0547 0.62 -0.9
620,081 + Psyr_0547 0.62 +2.4
620,082 - Psyr_0547 0.63 +2.1
620,082 - Psyr_0547 0.63 -3.5
620,082 - Psyr_0547 0.63 -1.1
620,082 - Psyr_0547 0.63 -0.8
620,082 - Psyr_0547 0.63 +3.1
620,082 - Psyr_0547 0.63 +3.4
620,082 - Psyr_0547 0.63 +3.7
620,082 - Psyr_0547 0.63 -0.3
620,082 - Psyr_0547 0.63 +3.7
620,313 + -0.4
620,314 - +0.1
620,314 - +0.3
620,327 + -0.6
620,328 - +2.1
620,328 - -0.0
620,328 - -1.6
620,387 - Psyr_0548 0.16 +3.6
620,478 - Psyr_0548 0.36 -0.9
620,510 - Psyr_0548 0.43 -1.0
620,584 + Psyr_0548 0.60 +3.1
620,584 + Psyr_0548 0.60 +0.9
620,584 + Psyr_0548 0.60 +2.4
620,584 + Psyr_0548 0.60 +1.7
620,584 + Psyr_0548 0.60 -3.0
620,584 + Psyr_0548 0.60 -2.0
620,585 - Psyr_0548 0.60 +4.2
620,647 + Psyr_0548 0.74 +1.7
620,647 + Psyr_0548 0.74 -1.1
620,647 + Psyr_0548 0.74 +2.1
620,647 + Psyr_0548 0.74 -2.4
620,648 - Psyr_0548 0.74 +2.4
620,648 - Psyr_0548 0.74 +3.8
620,648 - Psyr_0548 0.74 +3.6
621,117 - Psyr_0549 0.25 -2.1
621,448 - Psyr_0549 0.66 +4.1
621,486 + Psyr_0549 0.71 +3.8
621,733 - -2.3

Or see this region's nucleotide sequence