Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0535

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0534 and Psyr_0535 are separated by 48 nucleotidesPsyr_0535 and Psyr_0536 overlap by 2 nucleotides Psyr_0534: Psyr_0534 - membrane protein, putative, at 602,933 to 604,102 _0534 Psyr_0535: Psyr_0535 - toluene tolerance protein, putative, at 604,151 to 604,906 _0535 Psyr_0536: Psyr_0536 - ABC transporter, transmembrane region:ABC transporter, at 604,905 to 606,707 _0536 Position (kb) 604 605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 603.198 kb on - strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.410 kb on + strand, within Psyr_0534at 603.410 kb on + strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.542 kb on - strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.844 kb on + strand, within Psyr_0534at 603.844 kb on + strand, within Psyr_0534at 603.866 kb on + strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.957 kb on - strand, within Psyr_0534at 603.957 kb on - strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 604.101 kb on - strandat 604.101 kb on - strandat 604.101 kb on - strandat 604.206 kb on + strandat 604.206 kb on + strandat 604.206 kb on + strandat 604.404 kb on + strand, within Psyr_0535at 604.404 kb on + strand, within Psyr_0535at 604.404 kb on + strand, within Psyr_0535at 604.518 kb on + strand, within Psyr_0535at 604.518 kb on + strand, within Psyr_0535at 604.523 kb on + strand, within Psyr_0535at 604.565 kb on + strand, within Psyr_0535at 604.706 kb on + strand, within Psyr_0535at 604.736 kb on + strand, within Psyr_0535at 604.832 kb on + strandat 604.870 kb on + strandat 604.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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603,198 - Psyr_0534 0.23 +0.3
603,200 + Psyr_0534 0.23 -0.7
603,200 + Psyr_0534 0.23 +2.1
603,200 + Psyr_0534 0.23 -0.8
603,200 + Psyr_0534 0.23 -1.4
603,200 + Psyr_0534 0.23 +0.2
603,200 + Psyr_0534 0.23 -0.0
603,201 - Psyr_0534 0.23 -1.1
603,201 - Psyr_0534 0.23 +1.0
603,201 - Psyr_0534 0.23 -0.1
603,201 - Psyr_0534 0.23 +1.2
603,201 - Psyr_0534 0.23 +3.6
603,201 - Psyr_0534 0.23 +0.1
603,201 - Psyr_0534 0.23 +3.3
603,215 + Psyr_0534 0.24 -0.6
603,215 + Psyr_0534 0.24 +1.1
603,215 + Psyr_0534 0.24 -0.7
603,215 + Psyr_0534 0.24 -0.6
603,215 + Psyr_0534 0.24 +0.4
603,215 + Psyr_0534 0.24 -0.2
603,215 + Psyr_0534 0.24 +2.1
603,216 - Psyr_0534 0.24 -0.1
603,216 - Psyr_0534 0.24 -1.9
603,216 - Psyr_0534 0.24 +0.1
603,216 - Psyr_0534 0.24 +0.6
603,216 - Psyr_0534 0.24 +0.9
603,216 - Psyr_0534 0.24 +2.7
603,216 - Psyr_0534 0.24 +3.3
603,306 + Psyr_0534 0.32 +1.8
603,306 + Psyr_0534 0.32 -1.0
603,306 + Psyr_0534 0.32 -0.8
603,306 + Psyr_0534 0.32 -0.7
603,306 + Psyr_0534 0.32 +0.8
603,307 - Psyr_0534 0.32 -0.7
603,307 - Psyr_0534 0.32 +3.1
603,307 - Psyr_0534 0.32 +0.2
603,307 - Psyr_0534 0.32 -1.2
603,307 - Psyr_0534 0.32 +0.1
603,307 - Psyr_0534 0.32 +1.6
603,314 + Psyr_0534 0.33 -0.3
603,314 + Psyr_0534 0.33 -0.9
603,314 + Psyr_0534 0.33 +1.1
603,314 + Psyr_0534 0.33 -1.9
603,314 + Psyr_0534 0.33 +1.7
603,314 + Psyr_0534 0.33 -2.6
603,314 + Psyr_0534 0.33 -0.1
603,314 + Psyr_0534 0.33 -0.7
603,314 + Psyr_0534 0.33 +1.2
603,315 - Psyr_0534 0.33 -1.6
603,315 - Psyr_0534 0.33 -1.1
603,315 - Psyr_0534 0.33 +3.3
603,315 - Psyr_0534 0.33 -0.6
603,315 - Psyr_0534 0.33 -3.9
603,315 - Psyr_0534 0.33 -0.9
603,315 - Psyr_0534 0.33 -1.3
603,315 - Psyr_0534 0.33 -0.6
603,410 + Psyr_0534 0.41 -0.4
603,410 + Psyr_0534 0.41 +0.4
603,411 - Psyr_0534 0.41 -0.2
603,411 - Psyr_0534 0.41 -0.5
603,411 - Psyr_0534 0.41 +3.3
603,411 - Psyr_0534 0.41 -1.5
603,542 - Psyr_0534 0.52 -1.5
603,794 + Psyr_0534 0.74 +2.4
603,794 + Psyr_0534 0.74 +1.1
603,794 + Psyr_0534 0.74 -1.3
603,795 - Psyr_0534 0.74 +3.6
603,795 - Psyr_0534 0.74 -0.2
603,795 - Psyr_0534 0.74 -1.0
603,795 - Psyr_0534 0.74 -0.4
603,795 - Psyr_0534 0.74 -0.4
603,844 + Psyr_0534 0.78 +4.4
603,844 + Psyr_0534 0.78 +0.4
603,866 + Psyr_0534 0.80 +0.0
603,867 - Psyr_0534 0.80 -2.8
603,867 - Psyr_0534 0.80 -0.2
603,867 - Psyr_0534 0.80 +0.1
603,867 - Psyr_0534 0.80 -1.5
603,867 - Psyr_0534 0.80 +2.7
603,867 - Psyr_0534 0.80 -0.7
603,867 - Psyr_0534 0.80 -0.9
603,957 - Psyr_0534 0.88 -2.5
603,957 - Psyr_0534 0.88 +0.1
603,982 + Psyr_0534 0.90 -0.1
603,982 + Psyr_0534 0.90 -1.3
603,982 + Psyr_0534 0.90 +3.1
603,982 + Psyr_0534 0.90 -1.4
604,101 - -1.9
604,101 - -1.4
604,101 - -2.1
604,206 + -1.4
604,206 + +0.1
604,206 + +0.1
604,404 + Psyr_0535 0.33 +0.1
604,404 + Psyr_0535 0.33 +0.1
604,404 + Psyr_0535 0.33 -4.6
604,518 + Psyr_0535 0.49 -3.7
604,518 + Psyr_0535 0.49 -1.5
604,523 + Psyr_0535 0.49 -3.1
604,565 + Psyr_0535 0.55 +1.1
604,706 + Psyr_0535 0.73 +0.1
604,736 + Psyr_0535 0.77 +1.7
604,832 + +1.7
604,870 + -1.8
604,870 + +3.1

Or see this region's nucleotide sequence