Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0516 and Psyr_0517 are separated by 277 nucleotides Psyr_0517 and Psyr_0518 are separated by 142 nucleotides
Psyr_0516: Psyr_0516 - ATP-dependent RNA helicase DbpA, at 572,766 to 574,187
_0516
Psyr_0517: Psyr_0517 - Dihydrolipoamide acetyltransferase, at 574,465 to 576,138
_0517
Psyr_0518: Psyr_0518 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 576,281 to 578,926
_0518
Position (kb) 574
575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 573.652 kb on + strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.747 kb on - strand, within Psyr_0516 at 574.177 kb on + strand at 574.178 kb on - strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.183 kb on - strand at 574.252 kb on + strand at 574.252 kb on + strand at 574.253 kb on - strand at 574.253 kb on - strand at 574.429 kb on + strand at 574.429 kb on + strand at 574.430 kb on - strand at 574.430 kb on - strand at 574.430 kb on - strand at 576.190 kb on - strand at 576.190 kb on - strand at 576.218 kb on - strand at 576.218 kb on - strand at 576.250 kb on - strand at 576.250 kb on - strand at 576.589 kb on - strand, within Psyr_0518
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 573,652 + Psyr_0516 0.62 -1.6 573,653 - Psyr_0516 0.62 +2.1 573,653 - Psyr_0516 0.62 -0.5 573,653 - Psyr_0516 0.62 +1.0 573,744 + Psyr_0516 0.69 +2.4 573,744 + Psyr_0516 0.69 +2.9 573,744 + Psyr_0516 0.69 -1.3 573,744 + Psyr_0516 0.69 -2.6 573,744 + Psyr_0516 0.69 +1.7 573,744 + Psyr_0516 0.69 +0.1 573,745 - Psyr_0516 0.69 +0.4 573,745 - Psyr_0516 0.69 -1.5 573,745 - Psyr_0516 0.69 +1.8 573,745 - Psyr_0516 0.69 +3.3 573,746 + Psyr_0516 0.69 +2.2 573,746 + Psyr_0516 0.69 +0.1 573,746 + Psyr_0516 0.69 -1.5 573,747 - Psyr_0516 0.69 +4.1 574,177 + +2.9 574,178 - +3.3 574,182 + +2.9 574,182 + -1.0 574,182 + +3.2 574,182 + +2.9 574,183 - +2.4 574,252 + -1.2 574,252 + +4.0 574,253 - -0.2 574,253 - +0.1 574,429 + -0.0 574,429 + +0.1 574,430 - +2.9 574,430 - -0.6 574,430 - +2.8 576,190 - -1.1 576,190 - +2.5 576,218 - +2.1 576,218 - -0.4 576,250 - -1.5 576,250 - +3.1 576,589 - Psyr_0518 0.12 -3.6
Or see this region's nucleotide sequence