Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0515 and Psyr_0516 are separated by 175 nucleotides Psyr_0516 and Psyr_0517 are separated by 277 nucleotides
Psyr_0515: Psyr_0515 - HI0933-like protein, at 571,412 to 572,590
_0515
Psyr_0516: Psyr_0516 - ATP-dependent RNA helicase DbpA, at 572,766 to 574,187
_0516
Psyr_0517: Psyr_0517 - Dihydrolipoamide acetyltransferase, at 574,465 to 576,138
_0517
Position (kb) 572
573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.644 kb on + strand at 572.644 kb on + strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.717 kb on + strand at 572.717 kb on + strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.738 kb on + strand at 572.768 kb on - strand at 572.861 kb on - strand at 573.269 kb on + strand, within Psyr_0516 at 573.270 kb on - strand, within Psyr_0516 at 573.295 kb on - strand, within Psyr_0516 at 573.438 kb on + strand, within Psyr_0516 at 573.439 kb on - strand, within Psyr_0516 at 573.652 kb on + strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.747 kb on - strand, within Psyr_0516 at 574.177 kb on + strand at 574.178 kb on - strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.183 kb on - strand at 574.252 kb on + strand at 574.252 kb on + strand at 574.253 kb on - strand at 574.253 kb on - strand at 574.429 kb on + strand at 574.429 kb on + strand at 574.430 kb on - strand at 574.430 kb on - strand at 574.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 572,424 + Psyr_0515 0.86 +2.1 572,424 + Psyr_0515 0.86 +2.4 572,424 + Psyr_0515 0.86 +3.3 572,424 + Psyr_0515 0.86 +0.9 572,424 + Psyr_0515 0.86 +0.7 572,424 + Psyr_0515 0.86 +2.2 572,424 + Psyr_0515 0.86 +2.7 572,424 + Psyr_0515 0.86 +1.0 572,425 - Psyr_0515 0.86 +0.8 572,425 - Psyr_0515 0.86 -2.1 572,428 + Psyr_0515 0.86 +1.1 572,428 + Psyr_0515 0.86 +3.9 572,428 + Psyr_0515 0.86 +0.2 572,428 + Psyr_0515 0.86 -1.4 572,428 + Psyr_0515 0.86 +0.1 572,428 + Psyr_0515 0.86 -0.9 572,429 - Psyr_0515 0.86 -0.9 572,429 - Psyr_0515 0.86 +2.9 572,429 - Psyr_0515 0.86 -0.3 572,429 - Psyr_0515 0.86 -0.6 572,429 - Psyr_0515 0.86 -3.4 572,429 - Psyr_0515 0.86 -0.4 572,429 - Psyr_0515 0.86 -0.5 572,429 - Psyr_0515 0.86 +3.4 572,429 - Psyr_0515 0.86 -0.4 572,570 + -1.5 572,570 + -0.2 572,570 + -1.6 572,571 - +1.1 572,571 - +0.9 572,571 - -3.3 572,644 + +0.2 572,644 + -0.6 572,645 - +0.2 572,645 - -1.1 572,645 - -1.0 572,645 - -0.5 572,715 + -0.5 572,715 + -2.2 572,715 + -0.8 572,715 + +1.8 572,715 + +0.1 572,715 + -0.5 572,715 + -2.7 572,715 + +2.7 572,715 + -0.9 572,715 + +2.4 572,715 + +4.5 572,716 - -1.3 572,716 - -0.1 572,716 - -1.4 572,716 - +0.1 572,716 - +0.6 572,716 - +4.3 572,716 - -2.2 572,716 - +0.1 572,716 - +3.1 572,716 - -1.3 572,716 - -1.2 572,716 - +1.6 572,716 - -1.7 572,716 - +2.7 572,716 - +0.8 572,716 - -2.2 572,716 - -0.4 572,716 - +1.1 572,716 - -2.0 572,717 + +1.1 572,717 + -0.2 572,718 - -1.8 572,718 - +2.9 572,718 - +2.7 572,718 - -0.8 572,718 - +2.4 572,718 - -1.1 572,718 - +1.4 572,738 + -2.6 572,768 - +0.1 572,861 - -1.5 573,269 + Psyr_0516 0.35 -0.4 573,270 - Psyr_0516 0.35 +4.4 573,295 - Psyr_0516 0.37 +0.7 573,438 + Psyr_0516 0.47 -1.7 573,439 - Psyr_0516 0.47 -1.4 573,652 + Psyr_0516 0.62 -1.6 573,653 - Psyr_0516 0.62 +2.1 573,653 - Psyr_0516 0.62 -0.5 573,653 - Psyr_0516 0.62 +1.0 573,744 + Psyr_0516 0.69 +2.4 573,744 + Psyr_0516 0.69 +2.9 573,744 + Psyr_0516 0.69 -1.3 573,744 + Psyr_0516 0.69 -2.6 573,744 + Psyr_0516 0.69 +1.7 573,744 + Psyr_0516 0.69 +0.1 573,745 - Psyr_0516 0.69 +0.4 573,745 - Psyr_0516 0.69 -1.5 573,745 - Psyr_0516 0.69 +1.8 573,745 - Psyr_0516 0.69 +3.3 573,746 + Psyr_0516 0.69 +2.2 573,746 + Psyr_0516 0.69 +0.1 573,746 + Psyr_0516 0.69 -1.5 573,747 - Psyr_0516 0.69 +4.1 574,177 + +2.9 574,178 - +3.3 574,182 + +2.9 574,182 + -1.0 574,182 + +3.2 574,182 + +2.9 574,183 - +2.4 574,252 + -1.2 574,252 + +4.0 574,253 - -0.2 574,253 - +0.1 574,429 + -0.0 574,429 + +0.1 574,430 - +2.9 574,430 - -0.6 574,430 - +2.8
Or see this region's nucleotide sequence