Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0514 and Psyr_0515 are separated by 137 nucleotides Psyr_0515 and Psyr_0516 are separated by 175 nucleotides
Psyr_0514: Psyr_0514 - Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK, at 569,076 to 571,274
_0514
Psyr_0515: Psyr_0515 - HI0933-like protein, at 571,412 to 572,590
_0515
Psyr_0516: Psyr_0516 - ATP-dependent RNA helicase DbpA, at 572,766 to 574,187
_0516
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 570.478 kb on + strand, within Psyr_0514 at 570.478 kb on + strand, within Psyr_0514 at 570.478 kb on + strand, within Psyr_0514 at 570.479 kb on - strand, within Psyr_0514 at 570.484 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.530 kb on - strand, within Psyr_0514 at 570.530 kb on - strand, within Psyr_0514 at 570.852 kb on + strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.889 kb on + strand, within Psyr_0514 at 570.889 kb on + strand, within Psyr_0514 at 570.928 kb on + strand, within Psyr_0514 at 570.928 kb on + strand, within Psyr_0514 at 571.211 kb on + strand at 571.211 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.323 kb on + strand at 571.323 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.370 kb on + strand at 571.398 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.434 kb on + strand at 571.434 kb on + strand at 571.435 kb on - strand at 571.671 kb on + strand, within Psyr_0515 at 571.671 kb on + strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.644 kb on + strand at 572.644 kb on + strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.717 kb on + strand at 572.717 kb on + strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.738 kb on + strand at 572.768 kb on - strand at 572.861 kb on - strand at 573.269 kb on + strand, within Psyr_0516 at 573.270 kb on - strand, within Psyr_0516 at 573.295 kb on - strand, within Psyr_0516 at 573.438 kb on + strand, within Psyr_0516 at 573.439 kb on - strand, within Psyr_0516
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 570,478 + Psyr_0514 0.64 -0.7 570,478 + Psyr_0514 0.64 +0.2 570,478 + Psyr_0514 0.64 +0.1 570,479 - Psyr_0514 0.64 -0.1 570,484 + Psyr_0514 0.64 -0.7 570,529 + Psyr_0514 0.66 -0.8 570,529 + Psyr_0514 0.66 +3.6 570,529 + Psyr_0514 0.66 -0.2 570,529 + Psyr_0514 0.66 +0.9 570,530 - Psyr_0514 0.66 +3.6 570,530 - Psyr_0514 0.66 +0.7 570,852 + Psyr_0514 0.81 -0.3 570,853 - Psyr_0514 0.81 +4.3 570,853 - Psyr_0514 0.81 +2.9 570,853 - Psyr_0514 0.81 -1.2 570,853 - Psyr_0514 0.81 -1.4 570,889 + Psyr_0514 0.82 +3.3 570,889 + Psyr_0514 0.82 +0.7 570,928 + Psyr_0514 0.84 +1.0 570,928 + Psyr_0514 0.84 -1.8 571,211 + -1.2 571,211 + +2.1 571,213 + +2.3 571,213 + -1.6 571,213 + -1.4 571,213 + +2.7 571,214 - -0.0 571,214 - +1.1 571,214 - -2.2 571,214 - +0.0 571,250 + +3.1 571,250 + -0.5 571,250 + -1.7 571,250 + -2.3 571,250 + +3.4 571,251 - -2.6 571,251 - -1.1 571,251 - -0.7 571,251 - -2.7 571,251 - -2.2 571,251 - -2.0 571,323 + -2.1 571,323 - +1.1 571,324 - -3.2 571,324 - +3.1 571,324 - -0.2 571,324 - +1.7 571,327 + -1.1 571,327 + -1.8 571,327 + -1.0 571,327 + +1.1 571,327 + +1.7 571,327 + +3.8 571,327 + +2.9 571,327 + -3.6 571,327 + -1.3 571,327 + +3.9 571,328 - +0.1 571,328 - -1.2 571,328 - -1.0 571,328 - +1.2 571,328 - +2.4 571,328 - -0.5 571,328 - -1.2 571,328 - +3.4 571,328 - -2.7 571,328 - -1.7 571,328 - +0.1 571,328 - +3.3 571,328 - +1.1 571,328 - +0.4 571,348 + +3.1 571,348 + +0.1 571,348 + +2.4 571,348 + +1.3 571,349 - -1.0 571,349 - +1.7 571,349 - -0.1 571,349 - -3.1 571,349 - -0.6 571,349 - +0.2 571,349 - -1.2 571,370 + -1.0 571,398 + -2.3 571,419 + +2.4 571,419 + +2.9 571,419 + +2.4 571,419 + -1.3 571,419 + +1.7 571,419 + +3.3 571,419 + -0.1 571,419 + +3.3 571,419 + +3.1 571,419 + -0.7 571,420 - +1.1 571,420 - -2.3 571,420 - +0.6 571,420 - -1.8 571,420 - +0.1 571,434 + +3.1 571,434 + -0.3 571,435 - +3.1 571,671 + Psyr_0515 0.22 +4.3 571,671 + Psyr_0515 0.22 -1.1 571,672 - Psyr_0515 0.22 +0.1 571,672 - Psyr_0515 0.22 -0.1 571,672 - Psyr_0515 0.22 +0.3 572,424 + Psyr_0515 0.86 +2.1 572,424 + Psyr_0515 0.86 +2.4 572,424 + Psyr_0515 0.86 +3.3 572,424 + Psyr_0515 0.86 +0.9 572,424 + Psyr_0515 0.86 +0.7 572,424 + Psyr_0515 0.86 +2.2 572,424 + Psyr_0515 0.86 +2.7 572,424 + Psyr_0515 0.86 +1.0 572,425 - Psyr_0515 0.86 +0.8 572,425 - Psyr_0515 0.86 -2.1 572,428 + Psyr_0515 0.86 +1.1 572,428 + Psyr_0515 0.86 +3.9 572,428 + Psyr_0515 0.86 +0.2 572,428 + Psyr_0515 0.86 -1.4 572,428 + Psyr_0515 0.86 +0.1 572,428 + Psyr_0515 0.86 -0.9 572,429 - Psyr_0515 0.86 -0.9 572,429 - Psyr_0515 0.86 +2.9 572,429 - Psyr_0515 0.86 -0.3 572,429 - Psyr_0515 0.86 -0.6 572,429 - Psyr_0515 0.86 -3.4 572,429 - Psyr_0515 0.86 -0.4 572,429 - Psyr_0515 0.86 -0.5 572,429 - Psyr_0515 0.86 +3.4 572,429 - Psyr_0515 0.86 -0.4 572,570 + -1.5 572,570 + -0.2 572,570 + -1.6 572,571 - +1.1 572,571 - +0.9 572,571 - -3.3 572,644 + +0.2 572,644 + -0.6 572,645 - +0.2 572,645 - -1.1 572,645 - -1.0 572,645 - -0.5 572,715 + -0.5 572,715 + -2.2 572,715 + -0.8 572,715 + +1.8 572,715 + +0.1 572,715 + -0.5 572,715 + -2.7 572,715 + +2.7 572,715 + -0.9 572,715 + +2.4 572,715 + +4.5 572,716 - -1.3 572,716 - -0.1 572,716 - -1.4 572,716 - +0.1 572,716 - +0.6 572,716 - +4.3 572,716 - -2.2 572,716 - +0.1 572,716 - +3.1 572,716 - -1.3 572,716 - -1.2 572,716 - +1.6 572,716 - -1.7 572,716 - +2.7 572,716 - +0.8 572,716 - -2.2 572,716 - -0.4 572,716 - +1.1 572,716 - -2.0 572,717 + +1.1 572,717 + -0.2 572,718 - -1.8 572,718 - +2.9 572,718 - +2.7 572,718 - -0.8 572,718 - +2.4 572,718 - -1.1 572,718 - +1.4 572,738 + -2.6 572,768 - +0.1 572,861 - -1.5 573,269 + Psyr_0516 0.35 -0.4 573,270 - Psyr_0516 0.35 +4.4 573,295 - Psyr_0516 0.37 +0.7 573,438 + Psyr_0516 0.47 -1.7 573,439 - Psyr_0516 0.47 -1.4
Or see this region's nucleotide sequence