Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0508 and Psyr_0509 are separated by 296 nucleotides Psyr_0509 and Psyr_0510 are separated by 32 nucleotides Psyr_0510 and Psyr_0511 are separated by 26 nucleotides Psyr_0511 and Psyr_0512 are separated by 7 nucleotides
Psyr_0508: Psyr_0508 - lyase, putative, at 563,658 to 564,329
_0508
Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785
_0509
Psyr_0510: Psyr_0510 - conserved hypothetical protein, at 566,818 to 567,342
_0510
Psyr_0511: Psyr_0511 - conserved hypothetical protein, at 567,369 to 567,665
_0511
Psyr_0512: Psyr_0512 - GCN5-related N-acetyltransferase, at 567,673 to 568,131
_0512
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 563.633 kb on - strand at 563.633 kb on - strand at 563.689 kb on + strand at 563.689 kb on + strand at 563.689 kb on + strand at 563.690 kb on - strand at 563.690 kb on - strand at 563.690 kb on - strand at 563.740 kb on + strand, within Psyr_0508 at 563.740 kb on + strand, within Psyr_0508 at 563.740 kb on + strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.741 kb on - strand, within Psyr_0508 at 563.758 kb on + strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.759 kb on - strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.857 kb on + strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.858 kb on - strand, within Psyr_0508 at 563.890 kb on - strand, within Psyr_0508 at 563.890 kb on - strand, within Psyr_0508 at 563.900 kb on - strand, within Psyr_0508 at 563.974 kb on + strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 563.975 kb on - strand, within Psyr_0508 at 564.013 kb on + strand, within Psyr_0508 at 564.014 kb on - strand, within Psyr_0508 at 564.014 kb on - strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.021 kb on + strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.022 kb on - strand, within Psyr_0508 at 564.054 kb on + strand, within Psyr_0508 at 564.054 kb on + strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.055 kb on - strand, within Psyr_0508 at 564.113 kb on + strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.114 kb on - strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.160 kb on + strand, within Psyr_0508 at 564.179 kb on + strand, within Psyr_0508 at 564.232 kb on + strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.233 kb on - strand, within Psyr_0508 at 564.236 kb on + strand, within Psyr_0508 at 564.236 kb on + strand, within Psyr_0508 at 564.245 kb on - strand, within Psyr_0508 at 564.252 kb on + strand, within Psyr_0508 at 564.252 kb on + strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.253 kb on - strand, within Psyr_0508 at 564.255 kb on + strand, within Psyr_0508 at 564.255 kb on + strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.256 kb on - strand, within Psyr_0508 at 564.324 kb on + strand at 564.356 kb on + strand at 564.356 kb on + strand at 564.356 kb on + strand at 564.357 kb on - strand at 564.402 kb on + strand at 564.402 kb on + strand at 564.403 kb on - strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.597 kb on + strand at 564.598 kb on - strand at 564.598 kb on - strand at 564.690 kb on + strand at 564.691 kb on - strand at 564.699 kb on + strand at 564.783 kb on + strand at 564.784 kb on - strand at 564.798 kb on + strand at 564.799 kb on - strand at 564.963 kb on - strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 564.983 kb on + strand, within Psyr_0509 at 565.197 kb on + strand, within Psyr_0509 at 565.197 kb on + strand, within Psyr_0509 at 565.198 kb on - strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.244 kb on + strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.245 kb on - strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.263 kb on + strand, within Psyr_0509 at 565.264 kb on - strand, within Psyr_0509 at 565.289 kb on + strand, within Psyr_0509 at 565.290 kb on - strand, within Psyr_0509 at 565.317 kb on - strand, within Psyr_0509 at 565.317 kb on - strand, within Psyr_0509 at 565.430 kb on - strand, within Psyr_0509 at 565.451 kb on + strand, within Psyr_0509 at 565.517 kb on + strand, within Psyr_0509 at 565.562 kb on - strand, within Psyr_0509 at 565.562 kb on - strand, within Psyr_0509 at 565.565 kb on + strand, within Psyr_0509 at 565.565 kb on + strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.566 kb on - strand, within Psyr_0509 at 565.644 kb on + strand, within Psyr_0509 at 565.644 kb on + strand, within Psyr_0509 at 565.645 kb on - strand, within Psyr_0509 at 565.645 kb on - strand, within Psyr_0509 at 565.688 kb on + strand, within Psyr_0509 at 565.689 kb on - strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.916 kb on + strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.917 kb on - strand, within Psyr_0509 at 565.955 kb on + strand, within Psyr_0509 at 565.956 kb on - strand, within Psyr_0509 at 566.048 kb on + strand, within Psyr_0509 at 566.048 kb on + strand, within Psyr_0509 at 566.048 kb on + strand, within Psyr_0509 at 566.049 kb on - strand, within Psyr_0509 at 566.049 kb on - strand, within Psyr_0509 at 566.049 kb on - strand, within Psyr_0509 at 566.358 kb on + strand, within Psyr_0509 at 566.359 kb on - strand, within Psyr_0509 at 566.359 kb on - strand, within Psyr_0509 at 566.545 kb on + strand, within Psyr_0509 at 566.584 kb on + strand at 566.585 kb on - strand at 566.783 kb on + strand at 566.783 kb on + strand at 566.783 kb on + strand at 566.784 kb on - strand at 566.784 kb on - strand at 566.784 kb on - strand at 566.784 kb on - strand at 566.849 kb on - strand at 566.921 kb on - strand, within Psyr_0510 at 566.974 kb on + strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.239 kb on - strand, within Psyr_0510 at 567.299 kb on - strand at 567.308 kb on - strand at 567.399 kb on + strand, within Psyr_0511 at 567.411 kb on + strand, within Psyr_0511 at 567.411 kb on + strand, within Psyr_0511 at 567.411 kb on + strand, within Psyr_0511 at 567.412 kb on - strand, within Psyr_0511 at 567.420 kb on + strand, within Psyr_0511 at 567.421 kb on - strand, within Psyr_0511 at 567.503 kb on + strand, within Psyr_0511 at 567.504 kb on - strand, within Psyr_0511 at 567.658 kb on - strand at 567.758 kb on + strand, within Psyr_0512 at 567.761 kb on + strand, within Psyr_0512 at 567.761 kb on + strand, within Psyr_0512 at 567.762 kb on - strand, within Psyr_0512
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 563,633 - +2.7 563,633 - +3.1 563,689 + +0.2 563,689 + -0.4 563,689 + -2.9 563,690 - -1.5 563,690 - -0.5 563,690 - +2.1 563,740 + Psyr_0508 0.12 +0.4 563,740 + Psyr_0508 0.12 -3.6 563,740 + Psyr_0508 0.12 -2.9 563,741 - Psyr_0508 0.12 +3.5 563,741 - Psyr_0508 0.12 +2.9 563,741 - Psyr_0508 0.12 +1.1 563,741 - Psyr_0508 0.12 -0.5 563,741 - Psyr_0508 0.12 -1.9 563,741 - Psyr_0508 0.12 -4.4 563,741 - Psyr_0508 0.12 +3.7 563,758 + Psyr_0508 0.15 -0.9 563,759 - Psyr_0508 0.15 +2.7 563,759 - Psyr_0508 0.15 +0.4 563,759 - Psyr_0508 0.15 +2.1 563,857 + Psyr_0508 0.30 +0.3 563,857 + Psyr_0508 0.30 +3.1 563,857 + Psyr_0508 0.30 -1.1 563,857 + Psyr_0508 0.30 +2.9 563,858 - Psyr_0508 0.30 -0.2 563,858 - Psyr_0508 0.30 +1.3 563,858 - Psyr_0508 0.30 +2.4 563,858 - Psyr_0508 0.30 +3.5 563,890 - Psyr_0508 0.35 +0.9 563,890 - Psyr_0508 0.35 +2.7 563,900 - Psyr_0508 0.36 -0.9 563,974 + Psyr_0508 0.47 -0.8 563,975 - Psyr_0508 0.47 -1.1 563,975 - Psyr_0508 0.47 -2.2 563,975 - Psyr_0508 0.47 -1.2 563,975 - Psyr_0508 0.47 +0.1 564,013 + Psyr_0508 0.53 +0.4 564,014 - Psyr_0508 0.53 -0.2 564,014 - Psyr_0508 0.53 -0.6 564,021 + Psyr_0508 0.54 -0.7 564,021 + Psyr_0508 0.54 +3.9 564,021 + Psyr_0508 0.54 +3.5 564,021 + Psyr_0508 0.54 -0.5 564,021 + Psyr_0508 0.54 -1.2 564,021 + Psyr_0508 0.54 +0.8 564,021 + Psyr_0508 0.54 +3.1 564,021 + Psyr_0508 0.54 -1.3 564,022 - Psyr_0508 0.54 -2.9 564,022 - Psyr_0508 0.54 +0.1 564,022 - Psyr_0508 0.54 -0.2 564,054 + Psyr_0508 0.59 +1.1 564,054 + Psyr_0508 0.59 +3.4 564,055 - Psyr_0508 0.59 +2.7 564,055 - Psyr_0508 0.59 -0.7 564,055 - Psyr_0508 0.59 +0.7 564,113 + Psyr_0508 0.68 -1.0 564,114 - Psyr_0508 0.68 -0.2 564,114 - Psyr_0508 0.68 -0.9 564,114 - Psyr_0508 0.68 -0.7 564,114 - Psyr_0508 0.68 +1.5 564,114 - Psyr_0508 0.68 -0.5 564,114 - Psyr_0508 0.68 +0.2 564,114 - Psyr_0508 0.68 +0.4 564,114 - Psyr_0508 0.68 -0.2 564,160 + Psyr_0508 0.75 -1.6 564,160 + Psyr_0508 0.75 -2.7 564,160 + Psyr_0508 0.75 -2.2 564,179 + Psyr_0508 0.78 +5.0 564,232 + Psyr_0508 0.85 +3.3 564,233 - Psyr_0508 0.86 -2.3 564,233 - Psyr_0508 0.86 -1.2 564,233 - Psyr_0508 0.86 +3.9 564,236 + Psyr_0508 0.86 -1.1 564,236 + Psyr_0508 0.86 +0.2 564,245 - Psyr_0508 0.87 -1.4 564,252 + Psyr_0508 0.88 +0.1 564,252 + Psyr_0508 0.88 +2.4 564,253 - Psyr_0508 0.89 +1.1 564,253 - Psyr_0508 0.89 +3.5 564,253 - Psyr_0508 0.89 +4.7 564,255 + Psyr_0508 0.89 +3.1 564,255 + Psyr_0508 0.89 -2.5 564,256 - Psyr_0508 0.89 +1.7 564,256 - Psyr_0508 0.89 +2.9 564,256 - Psyr_0508 0.89 -0.6 564,324 + -2.3 564,356 + +0.1 564,356 + +1.8 564,356 + +0.5 564,357 - -0.2 564,402 + -0.3 564,402 + +4.0 564,403 - -3.7 564,597 + -0.5 564,597 + -1.0 564,597 + -1.0 564,597 + -0.8 564,598 - -1.6 564,598 - -1.8 564,690 + -1.7 564,691 - +2.1 564,699 + +0.1 564,783 + +3.5 564,784 - -0.5 564,798 + +2.1 564,799 - -1.4 564,963 - Psyr_0509 0.16 -1.4 564,983 + Psyr_0509 0.17 +0.4 564,983 + Psyr_0509 0.17 +0.2 564,983 + Psyr_0509 0.17 -1.1 564,983 + Psyr_0509 0.17 -0.3 564,983 + Psyr_0509 0.17 -1.6 565,197 + Psyr_0509 0.26 -0.9 565,197 + Psyr_0509 0.26 -0.9 565,198 - Psyr_0509 0.26 +2.9 565,244 + Psyr_0509 0.29 -0.3 565,244 + Psyr_0509 0.29 -2.9 565,244 + Psyr_0509 0.29 +4.0 565,244 + Psyr_0509 0.29 -2.0 565,244 + Psyr_0509 0.29 +4.3 565,244 + Psyr_0509 0.29 -2.6 565,244 + Psyr_0509 0.29 -1.4 565,244 + Psyr_0509 0.29 -1.9 565,244 + Psyr_0509 0.29 +2.7 565,244 + Psyr_0509 0.29 -1.1 565,244 + Psyr_0509 0.29 -1.3 565,245 - Psyr_0509 0.29 -0.4 565,245 - Psyr_0509 0.29 +0.8 565,245 - Psyr_0509 0.29 -1.5 565,245 - Psyr_0509 0.29 +3.1 565,245 - Psyr_0509 0.29 -1.3 565,245 - Psyr_0509 0.29 +2.9 565,263 + Psyr_0509 0.29 -1.1 565,263 + Psyr_0509 0.29 +2.4 565,263 + Psyr_0509 0.29 -0.8 565,264 - Psyr_0509 0.30 -1.1 565,289 + Psyr_0509 0.31 +4.1 565,290 - Psyr_0509 0.31 -2.2 565,317 - Psyr_0509 0.32 +0.1 565,317 - Psyr_0509 0.32 +3.4 565,430 - Psyr_0509 0.37 -0.6 565,451 + Psyr_0509 0.38 -2.1 565,517 + Psyr_0509 0.41 -0.3 565,562 - Psyr_0509 0.43 -2.1 565,562 - Psyr_0509 0.43 -0.0 565,565 + Psyr_0509 0.43 -1.2 565,565 + Psyr_0509 0.43 +1.1 565,566 - Psyr_0509 0.44 +2.7 565,566 - Psyr_0509 0.44 +4.3 565,566 - Psyr_0509 0.44 -2.0 565,566 - Psyr_0509 0.44 -1.7 565,644 + Psyr_0509 0.47 -0.6 565,644 + Psyr_0509 0.47 +0.9 565,645 - Psyr_0509 0.47 +1.1 565,645 - Psyr_0509 0.47 +1.7 565,688 + Psyr_0509 0.49 +1.7 565,689 - Psyr_0509 0.49 +2.1 565,916 + Psyr_0509 0.60 +3.4 565,916 + Psyr_0509 0.60 +4.5 565,916 + Psyr_0509 0.60 -0.1 565,916 + Psyr_0509 0.60 +0.1 565,916 + Psyr_0509 0.60 +2.9 565,916 + Psyr_0509 0.60 -0.4 565,916 + Psyr_0509 0.60 +1.7 565,917 - Psyr_0509 0.60 -1.8 565,917 - Psyr_0509 0.60 -1.6 565,917 - Psyr_0509 0.60 -0.6 565,917 - Psyr_0509 0.60 +4.0 565,917 - Psyr_0509 0.60 +0.4 565,917 - Psyr_0509 0.60 -1.8 565,955 + Psyr_0509 0.62 +0.5 565,956 - Psyr_0509 0.62 -1.2 566,048 + Psyr_0509 0.66 +1.8 566,048 + Psyr_0509 0.66 -1.3 566,048 + Psyr_0509 0.66 +3.3 566,049 - Psyr_0509 0.66 +3.1 566,049 - Psyr_0509 0.66 +3.9 566,049 - Psyr_0509 0.66 -0.3 566,358 + Psyr_0509 0.80 +4.4 566,359 - Psyr_0509 0.80 -0.2 566,359 - Psyr_0509 0.80 -1.0 566,545 + Psyr_0509 0.89 -0.2 566,584 + +0.1 566,585 - +3.5 566,783 + -3.7 566,783 + -0.2 566,783 + -1.8 566,784 - -0.3 566,784 - +2.9 566,784 - -3.0 566,784 - -0.8 566,849 - +3.1 566,921 - Psyr_0510 0.20 -1.6 566,974 + Psyr_0510 0.30 +0.1 567,239 - Psyr_0510 0.80 +2.1 567,239 - Psyr_0510 0.80 -0.9 567,239 - Psyr_0510 0.80 -1.3 567,239 - Psyr_0510 0.80 -0.6 567,299 - -1.1 567,308 - +2.4 567,399 + Psyr_0511 0.10 -1.7 567,411 + Psyr_0511 0.14 -1.4 567,411 + Psyr_0511 0.14 -1.2 567,411 + Psyr_0511 0.14 -1.5 567,412 - Psyr_0511 0.14 -0.1 567,420 + Psyr_0511 0.17 +2.1 567,421 - Psyr_0511 0.18 -0.4 567,503 + Psyr_0511 0.45 +1.7 567,504 - Psyr_0511 0.45 -1.1 567,658 - -1.9 567,758 + Psyr_0512 0.19 +3.7 567,761 + Psyr_0512 0.19 +0.1 567,761 + Psyr_0512 0.19 +0.9 567,762 - Psyr_0512 0.19 +3.3
Or see this region's nucleotide sequence