Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0462

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0460 and Psyr_0461 are separated by 354 nucleotidesPsyr_0461 and Psyr_0462 are separated by 152 nucleotidesPsyr_0462 and Psyr_0463 are separated by 22 nucleotides Psyr_0460: Psyr_0460 - adenosylhomocysteinase, at 498,180 to 499,589 _0460 Psyr_0461: Psyr_0461 - Thioesterase superfamily, at 499,944 to 500,339 _0461 Psyr_0462: Psyr_0462 - Hydroxypyruvate isomerase, at 500,492 to 501,277 _0462 Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757 _0463 Position (kb) 500 501 502Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.775 kb on - strandat 499.844 kb on + strandat 499.844 kb on + strandat 499.847 kb on + strandat 499.848 kb on - strandat 499.969 kb on + strandat 500.050 kb on - strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.091 kb on + strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.092 kb on - strand, within Psyr_0461at 500.200 kb on + strand, within Psyr_0461at 500.201 kb on - strand, within Psyr_0461at 500.307 kb on + strandat 500.329 kb on + strandat 500.329 kb on + strandat 500.329 kb on + strandat 500.329 kb on + strandat 500.330 kb on - strandat 500.376 kb on + strandat 500.376 kb on + strandat 500.376 kb on + strandat 500.418 kb on - strandat 500.418 kb on - strandat 500.481 kb on - strandat 500.580 kb on + strand, within Psyr_0462at 500.616 kb on + strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.617 kb on - strand, within Psyr_0462at 500.739 kb on + strand, within Psyr_0462at 500.740 kb on - strand, within Psyr_0462at 500.913 kb on + strand, within Psyr_0462at 500.913 kb on + strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 500.914 kb on - strand, within Psyr_0462at 500.954 kb on + strand, within Psyr_0462at 500.954 kb on + strand, within Psyr_0462at 500.955 kb on - strand, within Psyr_0462at 501.000 kb on + strand, within Psyr_0462at 501.001 kb on - strand, within Psyr_0462at 501.160 kb on - strand, within Psyr_0462at 501.165 kb on + strand, within Psyr_0462at 501.177 kb on + strand, within Psyr_0462at 501.280 kb on + strandat 501.281 kb on - strandat 501.663 kb on + strand, within Psyr_0463at 501.663 kb on + strand, within Psyr_0463at 501.663 kb on + strand, within Psyr_0463at 501.663 kb on + strand, within Psyr_0463at 501.663 kb on + strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.664 kb on - strand, within Psyr_0463at 501.770 kb on + strand, within Psyr_0463at 502.145 kb on - strand, within Psyr_0463

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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499,747 - -0.3
499,747 - -2.3
499,747 - +0.2
499,747 - -0.0
499,747 - -1.2
499,747 - -0.8
499,775 - -2.4
499,844 + +0.3
499,844 + -0.8
499,847 + -1.3
499,848 - -1.0
499,969 + +4.3
500,050 - Psyr_0461 0.27 +2.1
500,091 + Psyr_0461 0.37 -1.5
500,091 + Psyr_0461 0.37 -1.0
500,091 + Psyr_0461 0.37 -2.7
500,091 + Psyr_0461 0.37 -1.9
500,091 + Psyr_0461 0.37 +1.5
500,091 + Psyr_0461 0.37 -1.5
500,091 + Psyr_0461 0.37 -1.6
500,091 + Psyr_0461 0.37 +3.7
500,091 + Psyr_0461 0.37 +2.7
500,091 + Psyr_0461 0.37 +0.1
500,091 + Psyr_0461 0.37 +3.4
500,091 + Psyr_0461 0.37 +3.4
500,091 + Psyr_0461 0.37 +1.6
500,091 + Psyr_0461 0.37 -1.1
500,091 + Psyr_0461 0.37 +1.7
500,091 + Psyr_0461 0.37 +3.3
500,092 - Psyr_0461 0.37 +2.7
500,092 - Psyr_0461 0.37 +3.7
500,092 - Psyr_0461 0.37 +0.9
500,092 - Psyr_0461 0.37 +1.7
500,092 - Psyr_0461 0.37 -1.8
500,092 - Psyr_0461 0.37 +0.3
500,092 - Psyr_0461 0.37 +0.1
500,092 - Psyr_0461 0.37 -0.7
500,092 - Psyr_0461 0.37 -2.2
500,092 - Psyr_0461 0.37 -2.8
500,092 - Psyr_0461 0.37 +2.4
500,092 - Psyr_0461 0.37 +2.9
500,092 - Psyr_0461 0.37 +3.6
500,092 - Psyr_0461 0.37 +3.7
500,092 - Psyr_0461 0.37 +1.7
500,092 - Psyr_0461 0.37 +2.9
500,092 - Psyr_0461 0.37 -3.8
500,092 - Psyr_0461 0.37 +2.1
500,200 + Psyr_0461 0.65 +3.6
500,201 - Psyr_0461 0.65 +0.6
500,307 + -2.1
500,329 + +0.1
500,329 + -1.5
500,329 + +2.0
500,329 + -3.7
500,330 - +0.1
500,376 + -1.9
500,376 + -1.1
500,376 + -2.0
500,418 - +0.5
500,418 - +2.1
500,481 - +3.1
500,580 + Psyr_0462 0.11 -0.3
500,616 + Psyr_0462 0.16 -1.7
500,617 - Psyr_0462 0.16 +0.3
500,617 - Psyr_0462 0.16 -0.2
500,617 - Psyr_0462 0.16 -1.5
500,617 - Psyr_0462 0.16 -0.9
500,617 - Psyr_0462 0.16 +0.1
500,617 - Psyr_0462 0.16 -0.3
500,739 + Psyr_0462 0.31 +2.7
500,740 - Psyr_0462 0.32 -0.0
500,913 + Psyr_0462 0.54 -1.7
500,913 + Psyr_0462 0.54 -0.3
500,914 - Psyr_0462 0.54 -2.0
500,914 - Psyr_0462 0.54 -0.7
500,914 - Psyr_0462 0.54 -0.1
500,954 + Psyr_0462 0.59 -2.5
500,954 + Psyr_0462 0.59 -0.8
500,955 - Psyr_0462 0.59 +2.9
501,000 + Psyr_0462 0.65 -2.5
501,001 - Psyr_0462 0.65 -4.9
501,160 - Psyr_0462 0.85 +2.9
501,165 + Psyr_0462 0.86 -1.3
501,177 + Psyr_0462 0.87 -0.8
501,280 + -3.3
501,281 - -2.7
501,663 + Psyr_0463 0.25 +0.1
501,663 + Psyr_0463 0.25 +3.7
501,663 + Psyr_0463 0.25 +1.0
501,663 + Psyr_0463 0.25 +2.1
501,663 + Psyr_0463 0.25 +1.6
501,664 - Psyr_0463 0.25 +3.8
501,664 - Psyr_0463 0.25 -0.4
501,664 - Psyr_0463 0.25 +4.6
501,664 - Psyr_0463 0.25 -0.7
501,664 - Psyr_0463 0.25 -0.7
501,770 + Psyr_0463 0.32 -0.4
502,145 - Psyr_0463 0.58 +0.1

Or see this region's nucleotide sequence