Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0449

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0448 and Psyr_0449 are separated by 69 nucleotidesPsyr_0449 and Psyr_0450 are separated by 1 nucleotidesPsyr_0450 and Psyr_0451 are separated by 1 nucleotides Psyr_0448: Psyr_0448 - Acyl transferase region, at 484,738 to 485,673 _0448 Psyr_0449: Psyr_0449 - Malonate transporter MadL subunit, at 485,743 to 486,159 _0449 Psyr_0450: Psyr_0450 - Malonate/sodium symporter MadM subunit, at 486,161 to 486,925 _0450 Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853 _0451 Position (kb) 485 486 487Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 484.978 kb on + strand, within Psyr_0448at 484.979 kb on - strand, within Psyr_0448at 484.979 kb on - strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.401 kb on + strand, within Psyr_0448at 485.402 kb on - strand, within Psyr_0448at 485.692 kb on - strandat 485.692 kb on - strandat 485.748 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.753 kb on - strandat 485.766 kb on - strandat 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.499 kb on - strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.896 kb on + strandat 486.896 kb on + strandat 486.896 kb on + strandat 486.896 kb on + strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.924 kb on - strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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484,978 + Psyr_0448 0.26 -1.1
484,979 - Psyr_0448 0.26 -1.2
484,979 - Psyr_0448 0.26 +3.9
485,144 + Psyr_0448 0.43 -3.3
485,144 + Psyr_0448 0.43 +2.7
485,144 + Psyr_0448 0.43 -1.4
485,144 + Psyr_0448 0.43 +1.1
485,144 + Psyr_0448 0.43 +0.3
485,145 - Psyr_0448 0.43 -0.8
485,145 - Psyr_0448 0.43 +2.1
485,145 - Psyr_0448 0.43 -2.7
485,145 - Psyr_0448 0.43 +0.7
485,145 - Psyr_0448 0.43 +4.0
485,165 + Psyr_0448 0.46 -0.2
485,165 + Psyr_0448 0.46 -0.3
485,166 - Psyr_0448 0.46 +0.1
485,166 - Psyr_0448 0.46 -1.5
485,166 - Psyr_0448 0.46 -4.6
485,166 - Psyr_0448 0.46 +1.7
485,396 + Psyr_0448 0.70 -0.1
485,396 + Psyr_0448 0.70 -0.2
485,396 + Psyr_0448 0.70 +1.1
485,396 + Psyr_0448 0.70 +1.7
485,396 + Psyr_0448 0.70 -2.0
485,397 - Psyr_0448 0.70 +3.1
485,397 - Psyr_0448 0.70 -0.0
485,401 + Psyr_0448 0.71 +1.1
485,402 - Psyr_0448 0.71 +1.4
485,692 - -1.1
485,692 - -0.2
485,748 + +2.9
485,752 + -1.4
485,752 + +4.3
485,752 + -3.9
485,753 - +1.1
485,766 - -0.5
485,953 + Psyr_0449 0.50 +2.1
485,953 + Psyr_0449 0.50 +0.2
485,953 + Psyr_0449 0.50 +0.1
485,953 + Psyr_0449 0.50 -0.6
485,953 + Psyr_0449 0.50 +0.1
485,953 + Psyr_0449 0.50 +0.3
485,954 - Psyr_0449 0.51 +1.0
485,954 - Psyr_0449 0.51 +0.8
485,954 - Psyr_0449 0.51 -0.5
485,954 - Psyr_0449 0.51 -0.3
486,160 + -0.1
486,160 + +0.6
486,160 + -1.4
486,160 + +5.0
486,161 - +2.2
486,161 - -2.8
486,161 - -1.5
486,499 - Psyr_0450 0.44 +0.8
486,602 + Psyr_0450 0.58 +0.2
486,602 + Psyr_0450 0.58 +3.6
486,602 + Psyr_0450 0.58 +1.8
486,602 + Psyr_0450 0.58 +0.1
486,602 + Psyr_0450 0.58 +1.1
486,602 + Psyr_0450 0.58 -0.9
486,602 + Psyr_0450 0.58 -0.0
486,602 + Psyr_0450 0.58 +3.2
486,602 + Psyr_0450 0.58 +0.1
486,602 + Psyr_0450 0.58 -0.4
486,602 + Psyr_0450 0.58 -0.6
486,602 + Psyr_0450 0.58 +4.0
486,602 + Psyr_0450 0.58 -1.1
486,602 + Psyr_0450 0.58 +0.5
486,603 - Psyr_0450 0.58 -0.6
486,603 - Psyr_0450 0.58 -0.7
486,603 - Psyr_0450 0.58 +2.4
486,603 - Psyr_0450 0.58 +2.4
486,603 - Psyr_0450 0.58 +0.1
486,603 - Psyr_0450 0.58 -1.8
486,603 - Psyr_0450 0.58 +2.9
486,603 - Psyr_0450 0.58 -0.7
486,651 + Psyr_0450 0.64 +3.3
486,651 + Psyr_0450 0.64 -1.3
486,652 - Psyr_0450 0.64 +1.4
486,652 - Psyr_0450 0.64 -2.3
486,652 - Psyr_0450 0.64 +0.3
486,652 - Psyr_0450 0.64 +1.4
486,652 - Psyr_0450 0.64 -1.5
486,652 - Psyr_0450 0.64 -0.6
486,896 + -2.2
486,896 + +0.3
486,896 + -2.9
486,896 + +0.3
486,897 - -2.6
486,897 - -0.5
486,897 - -2.4
486,897 - -1.5
486,924 - -0.9
486,958 + +3.1
486,958 + -0.2
486,958 + -1.6
486,958 + +0.8
486,959 - +0.1
486,959 - -0.8
486,959 - +2.7
486,959 - -0.6
486,959 - -0.4

Or see this region's nucleotide sequence