Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0425 and Psyr_0426 overlap by 4 nucleotides Psyr_0426 and Psyr_0427 overlap by 4 nucleotides Psyr_0427 and Psyr_0428 overlap by 4 nucleotides
Psyr_0425: Psyr_0425 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 463,950 to 465,146
_0425
Psyr_0426: Psyr_0426 - lipoprotein, putative, at 465,143 to 465,625
_0426
Psyr_0427: Psyr_0427 - conserved hypothetical protein, at 465,622 to 466,356
_0427
Psyr_0428: Psyr_0428 - Monooxygenase, FAD-binding protein, at 466,353 to 467,600
_0428
Position (kb) 465
466 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 464.239 kb on - strand, within Psyr_0425 at 464.239 kb on - strand, within Psyr_0425 at 464.305 kb on + strand, within Psyr_0425 at 464.495 kb on + strand, within Psyr_0425 at 464.695 kb on + strand, within Psyr_0425 at 464.695 kb on + strand, within Psyr_0425 at 464.696 kb on - strand, within Psyr_0425 at 465.136 kb on + strand at 465.137 kb on - strand at 465.137 kb on - strand at 465.173 kb on - strand at 465.180 kb on + strand at 465.180 kb on + strand at 465.180 kb on + strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.228 kb on + strand, within Psyr_0426 at 465.614 kb on + strand at 465.758 kb on + strand, within Psyr_0427 at 465.758 kb on + strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.818 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 466.066 kb on + strand, within Psyr_0427 at 466.287 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.442 kb on - strand at 466.517 kb on + strand, within Psyr_0428 at 466.517 kb on + strand, within Psyr_0428 at 466.518 kb on - strand, within Psyr_0428 at 466.540 kb on + strand, within Psyr_0428 at 466.541 kb on - strand, within Psyr_0428
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 464,239 - Psyr_0425 0.24 +0.8 464,239 - Psyr_0425 0.24 +0.9 464,305 + Psyr_0425 0.30 -2.1 464,495 + Psyr_0425 0.46 +1.1 464,695 + Psyr_0425 0.62 -1.0 464,695 + Psyr_0425 0.62 -2.0 464,696 - Psyr_0425 0.62 +0.1 465,136 + +2.7 465,137 - +0.7 465,137 - -2.2 465,173 - +3.8 465,180 + -0.9 465,180 + -1.2 465,180 + +0.3 465,181 - +0.2 465,181 - -2.2 465,181 - -0.1 465,181 - -0.3 465,181 - -2.4 465,228 + Psyr_0426 0.18 -2.1 465,614 + -0.4 465,758 + Psyr_0427 0.19 -0.1 465,758 + Psyr_0427 0.19 +3.1 465,759 - Psyr_0427 0.19 -1.8 465,759 - Psyr_0427 0.19 +0.3 465,818 + Psyr_0427 0.27 +0.8 465,887 + Psyr_0427 0.36 +0.1 465,887 + Psyr_0427 0.36 +4.3 465,887 + Psyr_0427 0.36 -1.9 465,887 + Psyr_0427 0.36 -1.3 465,887 + Psyr_0427 0.36 +0.6 465,887 + Psyr_0427 0.36 +2.9 465,887 + Psyr_0427 0.36 -4.0 465,887 + Psyr_0427 0.36 +0.1 465,887 + Psyr_0427 0.36 +1.2 465,887 + Psyr_0427 0.36 -0.2 465,887 + Psyr_0427 0.36 -0.1 465,888 - Psyr_0427 0.36 -0.3 465,918 - Psyr_0427 0.40 -3.1 465,918 - Psyr_0427 0.40 +3.3 466,066 + Psyr_0427 0.60 -3.6 466,287 + -1.6 466,328 + +1.4 466,328 + -0.2 466,328 + +2.4 466,328 + +0.1 466,328 + +2.1 466,328 + -1.7 466,328 + +0.3 466,328 + -0.8 466,329 - +2.1 466,329 - -0.7 466,329 - +3.3 466,329 - +2.4 466,329 - -0.6 466,329 - -1.7 466,329 - +0.2 466,329 - +2.1 466,442 - -0.1 466,517 + Psyr_0428 0.13 +0.1 466,517 + Psyr_0428 0.13 +2.7 466,518 - Psyr_0428 0.13 -0.0 466,540 + Psyr_0428 0.15 +2.9 466,541 - Psyr_0428 0.15 -2.9
Or see this region's nucleotide sequence