Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0306

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0305 and Psyr_0306 are separated by 274 nucleotidesPsyr_0306 and Psyr_0307 are separated by 586 nucleotides Psyr_0305: Psyr_0305 - GlpT transporter:Glycerol-3-phosphate transporter, at 325,019 to 326,368 _0305 Psyr_0306: Psyr_0306 - TonB, C-terminal, at 326,643 to 327,308 _0306 Psyr_0307: Psyr_0307 - hypothetical protein, at 327,895 to 328,398 _0307 Position (kb) 326 327 328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 325.678 kb on - strand, within Psyr_0305at 325.701 kb on + strand, within Psyr_0305at 325.701 kb on + strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 326.088 kb on + strand, within Psyr_0305at 326.089 kb on - strand, within Psyr_0305at 326.188 kb on + strand, within Psyr_0305at 326.189 kb on - strand, within Psyr_0305at 326.189 kb on - strand, within Psyr_0305at 326.189 kb on - strand, within Psyr_0305at 326.190 kb on + strand, within Psyr_0305at 326.208 kb on + strand, within Psyr_0305at 326.209 kb on - strand, within Psyr_0305at 326.209 kb on - strand, within Psyr_0305at 326.244 kb on + strandat 326.244 kb on + strandat 326.245 kb on - strandat 326.245 kb on - strandat 326.245 kb on - strandat 326.245 kb on - strandat 326.302 kb on - strandat 326.384 kb on + strandat 326.385 kb on - strandat 326.385 kb on - strandat 326.459 kb on - strandat 326.523 kb on + strandat 326.539 kb on + strandat 326.539 kb on + strandat 326.587 kb on + strandat 326.587 kb on + strandat 326.588 kb on - strandat 326.636 kb on + strandat 326.636 kb on + strandat 326.637 kb on - strandat 326.637 kb on - strandat 326.637 kb on - strandat 326.721 kb on + strand, within Psyr_0306at 326.721 kb on + strand, within Psyr_0306at 326.721 kb on + strand, within Psyr_0306at 326.721 kb on + strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.892 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.895 kb on - strand, within Psyr_0306at 326.895 kb on - strand, within Psyr_0306at 327.080 kb on + strand, within Psyr_0306at 327.099 kb on + strand, within Psyr_0306at 327.100 kb on - strand, within Psyr_0306at 327.100 kb on - strandat 327.243 kb on + strandat 327.243 kb on + strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.354 kb on + strandat 327.355 kb on - strandat 327.537 kb on + strandat 327.537 kb on + strandat 327.538 kb on - strandat 327.585 kb on + strandat 327.646 kb on + strandat 327.669 kb on + strandat 327.670 kb on - strandat 327.670 kb on - strandat 327.670 kb on - strandat 327.779 kb on + strandat 327.779 kb on + strandat 327.806 kb on + strandat 327.806 kb on + strandat 327.807 kb on - strandat 327.813 kb on + strandat 327.813 kb on + strandat 327.814 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.842 kb on - strandat 327.931 kb on - strandat 327.996 kb on - strand, within Psyr_0307at 328.012 kb on - strand, within Psyr_0307at 328.029 kb on - strand, within Psyr_0307at 328.044 kb on + strand, within Psyr_0307at 328.047 kb on + strand, within Psyr_0307at 328.047 kb on + strand, within Psyr_0307at 328.117 kb on + strand, within Psyr_0307at 328.121 kb on + strand, within Psyr_0307at 328.178 kb on - strand, within Psyr_0307at 328.214 kb on + strand, within Psyr_0307at 328.214 kb on + strandat 328.214 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.258 kb on - strand, within Psyr_0307at 328.258 kb on - strand, within Psyr_0307at 328.294 kb on + strand, within Psyr_0307at 328.295 kb on - strand, within Psyr_0307

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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325,678 - Psyr_0305 0.49 +3.3
325,701 + Psyr_0305 0.51 -0.5
325,701 + Psyr_0305 0.51 -1.7
325,702 - Psyr_0305 0.51 -1.0
325,702 - Psyr_0305 0.51 +1.0
325,702 - Psyr_0305 0.51 -0.7
325,702 - Psyr_0305 0.51 -1.1
325,797 + Psyr_0305 0.58 -2.3
325,797 + Psyr_0305 0.58 +0.1
325,797 + Psyr_0305 0.58 -1.3
325,797 + Psyr_0305 0.58 -2.9
325,798 - Psyr_0305 0.58 -0.7
325,798 - Psyr_0305 0.58 -0.5
325,798 - Psyr_0305 0.58 +3.1
325,798 - Psyr_0305 0.58 -0.7
326,088 + Psyr_0305 0.79 +2.4
326,089 - Psyr_0305 0.79 +0.3
326,188 + Psyr_0305 0.87 +2.1
326,189 - Psyr_0305 0.87 +0.1
326,189 - Psyr_0305 0.87 -0.6
326,189 - Psyr_0305 0.87 -0.4
326,190 + Psyr_0305 0.87 -2.6
326,208 + Psyr_0305 0.88 +3.4
326,209 - Psyr_0305 0.88 +0.1
326,209 - Psyr_0305 0.88 -0.4
326,244 + -1.1
326,244 + -2.9
326,245 - +2.4
326,245 - +3.4
326,245 - -1.3
326,245 - +4.1
326,302 - -1.5
326,384 + -0.8
326,385 - -1.2
326,385 - +1.9
326,459 - -2.0
326,523 + +3.4
326,539 + -0.6
326,539 + +0.1
326,587 + -2.5
326,587 + -1.3
326,588 - -2.9
326,636 + -0.3
326,636 + -3.1
326,637 - -1.7
326,637 - +2.1
326,637 - -0.4
326,721 + Psyr_0306 0.12 -0.5
326,721 + Psyr_0306 0.12 +0.7
326,721 + Psyr_0306 0.12 -1.1
326,721 + Psyr_0306 0.12 +0.6
326,722 - Psyr_0306 0.12 -1.3
326,722 - Psyr_0306 0.12 +2.1
326,722 - Psyr_0306 0.12 +4.5
326,722 - Psyr_0306 0.12 +3.4
326,722 - Psyr_0306 0.12 -1.1
326,892 + Psyr_0306 0.37 +0.1
326,894 + Psyr_0306 0.38 +3.1
326,894 + Psyr_0306 0.38 +2.1
326,894 + Psyr_0306 0.38 +3.9
326,894 + Psyr_0306 0.38 -0.1
326,894 + Psyr_0306 0.38 +1.4
326,895 - Psyr_0306 0.38 +3.9
326,895 - Psyr_0306 0.38 -0.4
327,080 + Psyr_0306 0.66 -1.7
327,099 + Psyr_0306 0.68 +1.7
327,100 - Psyr_0306 0.69 +0.7
327,100 - +1.7
327,243 + +3.0
327,243 + +3.3
327,244 - -0.1
327,244 - -0.1
327,244 - -0.9
327,244 - -1.1
327,244 - +3.4
327,325 + -2.3
327,325 + -1.1
327,325 + -0.3
327,325 + +2.1
327,325 + -1.8
327,325 + -2.0
327,326 - +0.1
327,326 - -0.2
327,326 - -0.0
327,326 - +2.7
327,326 - +0.1
327,326 - -0.5
327,326 - -0.5
327,354 + +3.4
327,355 - +4.2
327,537 + +1.7
327,537 + -0.1
327,538 - -0.4
327,585 + -0.7
327,646 + +0.5
327,669 + -1.2
327,670 - -0.7
327,670 - +1.3
327,670 - +3.6
327,779 + -2.1
327,779 + -2.8
327,806 + -0.7
327,806 + -1.7
327,807 - -2.7
327,813 + -0.5
327,813 + +0.2
327,814 - -0.6
327,837 - +2.4
327,837 - +0.1
327,842 - -0.5
327,931 - -1.2
327,996 - Psyr_0307 0.20 -0.7
328,012 - Psyr_0307 0.23 -1.0
328,029 - Psyr_0307 0.27 +0.1
328,044 + Psyr_0307 0.30 +1.7
328,047 + Psyr_0307 0.30 +0.1
328,047 + Psyr_0307 0.30 -1.7
328,117 + Psyr_0307 0.44 -0.7
328,121 + Psyr_0307 0.45 +3.7
328,178 - Psyr_0307 0.56 +2.7
328,214 + Psyr_0307 0.63 -3.5
328,214 + -1.3
328,214 + Psyr_0307 0.63 +1.7
328,257 + Psyr_0307 0.72 +0.1
328,257 + Psyr_0307 0.72 -0.5
328,257 + Psyr_0307 0.72 +4.8
328,258 - Psyr_0307 0.72 -4.2
328,258 - Psyr_0307 0.72 -1.5
328,294 + Psyr_0307 0.79 +0.1
328,295 - Psyr_0307 0.79 -0.1

Or see this region's nucleotide sequence