Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0247

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0246 and Psyr_0247 are separated by 43 nucleotidesPsyr_0247 and Psyr_0248 are separated by 69 nucleotidesPsyr_0248 and Psyr_0249 are separated by 141 nucleotides Psyr_0246: Psyr_0246 - aminomethyltransferase, at 259,665 to 260,747 _0246 Psyr_0247: Psyr_0247 - glycine cleavage system H protein, at 260,791 to 261,177 _0247 Psyr_0248: Psyr_0248 - conserved hypothetical protein, at 261,247 to 261,567 _0248 Psyr_0249: Psyr_0249 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 261,709 to 263,493 _0249 Position (kb) 260 261 262Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.917 kb on + strand, within Psyr_0246at 259.917 kb on + strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.968 kb on + strand, within Psyr_0246at 259.968 kb on + strand, within Psyr_0246at 260.227 kb on - strand, within Psyr_0246at 260.368 kb on - strand, within Psyr_0246at 260.454 kb on - strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.597 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.745 kb on + strandat 260.745 kb on + strandat 260.746 kb on - strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.789 kb on - strandat 260.789 kb on - strandat 260.789 kb on - strandat 260.799 kb on + strandat 260.998 kb on - strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.154 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.249 kb on - strandat 261.249 kb on - strandat 261.449 kb on + strand, within Psyr_0248at 261.449 kb on + strand, within Psyr_0248at 261.449 kb on + strand, within Psyr_0248at 261.450 kb on - strand, within Psyr_0248at 261.450 kb on - strand, within Psyr_0248at 261.575 kb on + strandat 261.575 kb on + strandat 261.576 kb on - strandat 261.576 kb on - strandat 261.576 kb on - strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.657 kb on + strandat 261.756 kb on + strandat 261.757 kb on - strandat 261.757 kb on - strandat 261.757 kb on - strandat 261.757 kb on - strandat 261.900 kb on - strand, within Psyr_0249at 262.106 kb on + strand, within Psyr_0249at 262.107 kb on - strand, within Psyr_0249

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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259,885 + Psyr_0246 0.20 +3.0
259,885 + Psyr_0246 0.20 +1.2
259,885 + Psyr_0246 0.20 -0.0
259,885 + Psyr_0246 0.20 -0.4
259,885 + Psyr_0246 0.20 -1.6
259,885 + Psyr_0246 0.20 +1.2
259,885 + Psyr_0246 0.20 +0.8
259,885 + Psyr_0246 0.20 +1.7
259,886 - Psyr_0246 0.20 -1.1
259,886 - Psyr_0246 0.20 -0.4
259,886 - Psyr_0246 0.20 -1.5
259,886 - Psyr_0246 0.20 -1.6
259,886 - Psyr_0246 0.20 +3.2
259,886 - Psyr_0246 0.20 +1.7
259,886 - Psyr_0246 0.20 +1.7
259,886 - Psyr_0246 0.20 -0.8
259,917 + Psyr_0246 0.23 -0.1
259,917 + Psyr_0246 0.23 -2.0
259,918 - Psyr_0246 0.23 -0.8
259,918 - Psyr_0246 0.23 -1.1
259,918 - Psyr_0246 0.23 -1.0
259,918 - Psyr_0246 0.23 +2.7
259,918 - Psyr_0246 0.23 +2.2
259,918 - Psyr_0246 0.23 +3.9
259,918 - Psyr_0246 0.23 +0.2
259,918 - Psyr_0246 0.23 -0.1
259,968 + Psyr_0246 0.28 +3.2
259,968 + Psyr_0246 0.28 -0.8
260,227 - Psyr_0246 0.52 -2.9
260,368 - Psyr_0246 0.65 -2.1
260,454 - Psyr_0246 0.73 -0.5
260,557 + Psyr_0246 0.82 +0.2
260,557 + Psyr_0246 0.82 +0.7
260,557 + Psyr_0246 0.82 +1.2
260,557 + Psyr_0246 0.82 +1.2
260,557 + Psyr_0246 0.82 -0.3
260,557 + Psyr_0246 0.82 +3.5
260,557 + Psyr_0246 0.82 -1.4
260,558 - Psyr_0246 0.82 +0.2
260,558 - Psyr_0246 0.82 -1.3
260,558 - Psyr_0246 0.82 +3.5
260,558 - Psyr_0246 0.82 +0.2
260,558 - Psyr_0246 0.82 +1.2
260,558 - Psyr_0246 0.82 -2.2
260,558 - Psyr_0246 0.82 +3.3
260,597 + Psyr_0246 0.86 -2.6
260,609 + Psyr_0246 0.87 +3.3
260,609 + Psyr_0246 0.87 +3.3
260,609 + Psyr_0246 0.87 -1.3
260,610 - Psyr_0246 0.87 -0.9
260,610 - Psyr_0246 0.87 -1.6
260,610 - Psyr_0246 0.87 -1.4
260,610 - Psyr_0246 0.87 +3.3
260,745 + +1.7
260,745 + -0.1
260,746 - +0.9
260,750 + +0.2
260,750 + -0.1
260,750 + -3.5
260,750 + +2.5
260,788 + -1.8
260,788 + -1.3
260,788 + +1.7
260,788 + +3.3
260,788 + +3.6
260,789 - -0.8
260,789 - +4.5
260,789 - +0.5
260,799 + +0.3
260,998 - Psyr_0247 0.53 +0.2
261,001 + Psyr_0247 0.54 +0.8
261,001 + Psyr_0247 0.54 +1.2
261,001 + Psyr_0247 0.54 +4.2
261,001 + Psyr_0247 0.54 +0.6
261,001 + Psyr_0247 0.54 +1.4
261,001 + Psyr_0247 0.54 -0.7
261,001 + Psyr_0247 0.54 +2.2
261,001 + Psyr_0247 0.54 -2.2
261,002 - Psyr_0247 0.55 +0.2
261,002 - Psyr_0247 0.55 +1.2
261,002 - Psyr_0247 0.55 +3.6
261,002 - Psyr_0247 0.55 -0.1
261,154 + -1.3
261,248 + +0.2
261,248 + +3.5
261,248 + -4.2
261,248 + +1.7
261,248 + +2.0
261,249 - +2.5
261,249 - -0.4
261,449 + Psyr_0248 0.63 +0.6
261,449 + Psyr_0248 0.63 +1.2
261,449 + Psyr_0248 0.63 -0.1
261,450 - Psyr_0248 0.63 -0.3
261,450 - Psyr_0248 0.63 -0.6
261,575 + +4.4
261,575 + +0.4
261,576 - -1.8
261,576 - +1.2
261,576 - +3.9
261,611 + +2.3
261,611 + -1.6
261,611 + +3.6
261,611 + +0.7
261,612 - +0.3
261,612 - -0.5
261,612 - -0.4
261,612 - +0.2
261,624 + +4.0
261,624 + +0.4
261,624 + -1.5
261,624 + +0.2
261,624 + +5.1
261,624 + -1.1
261,624 + +0.4
261,625 - -0.1
261,625 - +0.2
261,625 - +2.2
261,625 - -0.5
261,625 - +4.6
261,625 - +1.5
261,625 - +2.7
261,657 + -0.2
261,756 + -1.8
261,757 - -0.8
261,757 - +1.6
261,757 - -1.8
261,757 - -1.7
261,900 - Psyr_0249 0.11 -0.8
262,106 + Psyr_0249 0.22 -2.6
262,107 - Psyr_0249 0.22 -0.8

Or see this region's nucleotide sequence